HHsearch alignment of GI: 254781110 and MMDB domain: 2vdr_B_110-351
>2vdr_B (B:110-351) Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=99.02 E-value=1.5e-10 Score=86.74 Aligned_cols=187 Identities=13% Similarity=0.090 Sum_probs=109.1
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCC----
Q ss_conf 4320122102232422335787666675346766530678899989999851046787655430223204876431----
Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEK---- 265 (420)
Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 265 (420)
+.++.|++|.||||. .+++.+++++..+++.+.... ...|++++.|.+....
T Consensus 2 PiDivfviD~SgSM~---------------------~~i~~~K~~i~~~~~~~~~~~---~~~r~~~v~f~d~~~~~~~~ 57 (242)
T 2vdr_B 2 PVDIYYLMDLSYSMK---------------------DDLWSIQNLGTKLATQMRKLT---SNLRIGFGAFVDKPVSPYMY 57 (242)
T ss_dssp CEEEEEEEECSGGGG---------------------GGHHHHHHHHHHHHHHHHHHC---TTEEEEEEEECCCSSTTTSC
T ss_pred CCCEEEEEECCCCHH---------------------HHHHHHHHHHHHHHHHHHHHC---CCCEEEEEEEEECCCCCCCC
T ss_conf 866799994686879---------------------999999999999999998528---67369776502024565223
Q ss_pred --------------------------CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf --------------------------244577848899999986404678876538899999986131012334554334
Q gi|254781110|r 266 --------------------------NIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFR 319 (420)
Q Consensus 266 --------------------------~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~ 319 (420)
..+++.+...+++.++.+ .+.|||+..+++.+|...+......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~i~~~---~~~gGtd~~e~~~~a~~~~~~~~~~-------- 126 (242)
T 2vdr_B 58 ISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQ---SVSRNRDAPEGGFDAIMQATVCDEK-------- 126 (242)
T ss_dssp CCSTHHHHCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTC---CCCCCSBSSBCHHHHHHHHHHCHHH--------
T ss_pred CCCHHHHCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHE---ECCCCCCCCCCHHHHHHHHHHHHCC--------
T ss_conf 46665505866566665667633010266778899999998622---1537898773399999999861101--------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCHHH-----HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC
Q ss_conf 77677877666248996068677777653489-----9999999789879999954897789999986218982798179
Q gi|254781110|r 320 QGVKIPSLPFQKFIIFLTDGENNNFKSNVNTI-----KICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVN 394 (420)
Q Consensus 320 ~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~~-----~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~ 394 (420)
...+++.+|++||+|||..+......... .........++.+++++++.+.....+-+.+....+.++.+.+
T Consensus 127 ---~~~r~~~~k~iilitD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (242)
T 2vdr_B 127 ---IGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTE 203 (242)
T ss_dssp ---HTCCTTSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEEEEEEG
T ss_pred ---CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECH
T ss_conf ---67787966999998868744356765333314788750326788645445477889999999998629379999457
Q ss_pred HHHHHHHHHHHHHHHHCCEEEE
Q ss_conf 8999999999998742025587
Q gi|254781110|r 395 ADSLIHVFQNISQLMVHRKYSV 416 (420)
Q Consensus 395 ~~~L~~aF~~Ia~~I~~lr~s~ 416 (420)
+..+.|+.+++.+...+..+
T Consensus 204 --~~~~~~~~l~~~~~~~~~~~ 223 (242)
T 2vdr_B 204 --NVVNLYQNYSELIPGTTVGV 223 (242)
T ss_dssp --GGHHHHHHHHTTSTTCEEEE
T ss_pred --HHHHHHHHHHHHCCCCEEEE
T ss_conf --88889999987567654433