Query gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 420 No_of_seqs 153 out of 724 Neff 9.9 Searched_HMMs 33803 Date Wed Jun 1 22:31:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781110.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2ww8_A RRGA, cell WALL surfac 99.9 7.5E-25 2.2E-29 179.9 13.4 186 189-411 3-269 (269) 2 >3hrz_D Complement factor B; s 99.7 4.2E-15 1.2E-19 116.5 17.3 193 187-413 42-253 (259) 3 >1rrk_A Complement factor B; B 99.7 3.5E-15 1E-19 117.0 15.1 190 191-413 2-209 (214) 4 >2odp_A Complement C2; C3/C5 c 99.6 1.5E-14 4.5E-19 112.8 14.2 197 186-412 5-216 (224) 5 >1shu_X Anthrax toxin receptor 99.6 1.1E-13 3.4E-18 107.1 17.7 177 188-409 4-181 (182) 6 >1q0p_A Complement factor B; V 99.6 1.7E-13 5E-18 106.0 15.1 192 187-412 12-222 (223) 7 >3gxb_A VON willebrand factor; 99.6 3.2E-13 9.3E-18 104.2 15.8 174 190-411 2-176 (184) 8 >3ibs_A Conserved hypothetical 99.6 8.8E-13 2.6E-17 101.3 17.5 177 187-407 8-211 (218) 9 >1atz_A VON willebrand factor; 99.5 2.7E-13 8E-18 104.7 14.0 174 189-405 4-179 (189) 10 >1ijb_A VON willebrand factor; 99.5 3E-12 8.8E-17 97.9 19.0 186 187-412 10-198 (202) 11 >1jey_A KU70; double-strand DN 99.5 1.2E-12 3.5E-17 100.5 11.7 188 189-410 34-251 (252) 12 >1n3y_A Integrin alpha-X; alph 99.4 1.9E-12 5.5E-17 99.2 12.2 186 187-412 6-196 (198) 13 >2b2x_A Integrin alpha-1; comp 99.4 7.8E-12 2.3E-16 95.2 15.0 185 187-412 19-214 (223) 14 >1v7p_C Integrin alpha-2; snak 99.4 1.4E-11 4.1E-16 93.5 14.2 182 189-412 5-198 (200) 15 >1jey_B KU80; double-strand DN 99.4 2.6E-11 7.8E-16 91.7 15.2 185 191-409 8-212 (279) 16 >1mf7_A Integrin alpha M; cell 99.4 5.9E-12 1.7E-16 96.0 11.3 184 189-412 4-192 (194) 17 >3k6s_A Integrin alpha-X; hete 99.4 3.5E-13 1E-17 104.0 4.6 182 188-409 4-190 (191) 18 >1pt6_A Integrin alpha-1; X-RA 99.4 4.1E-11 1.2E-15 90.5 14.0 185 187-413 4-200 (213) 19 >1mjn_A Integrin alpha-L; ross 99.3 9.1E-14 2.7E-18 107.7 -1.5 176 190-409 2-179 (179) 20 >1yvr_A RO autoantigen, 60-kDa 99.1 2.7E-09 8.1E-14 78.6 13.7 139 189-374 3-142 (174) 21 >2vdr_B Integrin beta-3; cell 99.0 1.5E-10 4.5E-15 86.7 3.4 187 190-416 2-223 (242) 22 >2nvo_A RO sixty-related prote 99.0 1.4E-08 4.1E-13 74.0 12.4 143 187-374 13-156 (189) 23 >2iue_A Pactolus I-domain; mem 98.8 4.9E-09 1.4E-13 77.0 4.0 186 190-416 3-193 (212) 24 >3fcs_B Integrin beta-3; beta 98.5 1.6E-08 4.8E-13 73.6 0.8 117 190-345 3-150 (244) 25 >3k6s_B Integrin beta-2; heter 98.4 1.6E-07 4.6E-12 67.2 3.3 89 266-370 84-201 (241) 26 >3eh1_A Protein transport prot 92.1 0.71 2.1E-05 23.8 18.5 158 228-410 25-244 (245) 27 >3lft_A Uncharacterized protei 90.7 0.97 2.9E-05 22.9 8.7 87 327-417 14-100 (118) 28 >3efo_B SEC24 related gene fam 85.0 2.2 6.5E-05 20.6 17.8 149 228-395 26-232 (251) 29 >1m2v_B SEC24, protein transpo 81.8 2.9 8.7E-05 19.8 17.8 157 228-408 25-250 (253) 30 >2nut_A Protein transport prot 80.1 3.4 1E-04 19.4 13.4 96 291-403 137-263 (270) 31 >2gb3_A Aspartate aminotransfe 58.4 9.9 0.00029 16.4 3.2 25 349-373 30-54 (173) 32 >3eh2_A Protein transport prot 58.2 10 0.0003 16.3 15.2 148 228-394 26-231 (234) 33 >1kjn_A MTH0777; hypotethical 57.2 7.9 0.00023 17.0 2.5 16 358-373 100-115 (157) 34 >1pcx_A Protein transport prot 50.6 13 0.00039 15.5 19.7 158 228-409 25-251 (255) 35 >1qqg_A IRS-1, insulin recepto 44.9 16 0.00048 15.0 2.8 34 380-413 91-125 (131) 36 >2pnf_A 3-oxoacyl-[acyl-carrie 41.0 18 0.00055 14.6 5.3 56 350-408 168-231 (248) 37 >2w8t_A SPT, serine palmitoylt 40.2 5.6 0.00017 18.0 -0.5 64 349-415 76-139 (145) 38 >2fqx_A Membrane lipoprotein T 30.0 28 0.00082 13.5 8.7 87 330-417 5-92 (147) 39 >3a2b_A Serine palmitoyltransf 29.7 23 0.00067 14.0 1.3 58 349-412 68-128 (131) 40 >2zj3_A Glucosamine--fructose- 29.1 29 0.00085 13.4 5.7 79 289-372 22-102 (159) 41 >3dhf_A Nicotinamide phosphori 27.8 30 0.00088 13.2 1.6 42 326-372 196-237 (243) 42 >2ket_A Cathelicidin-6; antimi 27.6 30 0.0009 13.2 2.5 22 3-24 2-23 (27) 43 >1xi9_A Putative transaminase; 25.4 33 0.00098 12.9 5.5 22 392-413 134-155 (157) 44 >1m2o_A SEC23, protein transpo 22.0 38 0.0011 12.5 12.8 96 290-402 141-267 (275) 45 >1v5e_A Pyruvate oxidase; oxid 20.3 42 0.0012 12.3 6.9 82 330-417 71-172 (186) No 1 >>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} (A:221-279,A:318-447,A:506-585) Probab=99.93 E-value=7.5e-25 Score=179.89 Aligned_cols=186 Identities=16% Similarity=0.153 Sum_probs=141.1 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC Q ss_conf 44320122102232422335787666675346766530678899989999851046787655430223204876431244 Q gi|254781110|r 189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE 268 (420) Q Consensus 189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (420) ...++.+++|.|+||...... ..+|++.++.+...+++.+...+ ..+++++.|++....... T Consensus 3 ~~~~i~~viD~S~SM~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~----~~~v~lv~f~~~~~~~~~ 64 (269) T 2ww8_A 3 VPLDVVILLDNSNSMSNIRNK--------------NARRAERAGEATRSLIDKITSDS----ENRVALVTYASTIDYSYL 64 (269) T ss_dssp CCEEEEEEEECCGGGCTTHHH--------------HCCHHHHHHHHHHHHHHHHHTST----TCEEEEEEESSSBBCCEE T ss_pred CCCCEEEEECCCCCCCCCCCC--------------CCEEEEECCCCEEEEEEEEEECC----CCEEEEEEECCCCCCCEE T ss_conf 245579996146630001346--------------53056522645046425777537----860578840231042025 Q ss_pred CCCCHHHHHHHHH-----------HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 5778488999999-----------86404678876538899999986131012334554334776778776662489960 Q gi|254781110|r 269 PSWGTEKVRQYVT-----------RDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLT 337 (420) Q Consensus 269 lt~~~~~~~~~i~-----------~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~T 337 (420) ...........+. .+....++|+|+++.||.|+++.+.+.+ ....+|++|||| T Consensus 65 ~~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~GgT~~~~AL~~a~~~l~~~~----------------~~~~~kvIiliT 128 (269) T 2ww8_A 65 KLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQA----------------RQNSQKVIFHIT 128 (269) T ss_dssp EEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHS----------------CSSSEEEEEEEE T ss_pred EEEECCCCEEEECCEEEEEECCCCCCCEEECCCCEEEEEECCCCCEEEEECC----------------CCCCCEEEEECC T ss_conf 5541254113303101232102456410101462466530022414776215----------------776520478615 Q ss_pred CCCCCCCCC---------------------------------------------------------------CCHHHHHH Q ss_conf 686777776---------------------------------------------------------------53489999 Q gi|254781110|r 338 DGENNNFKS---------------------------------------------------------------NVNTIKIC 354 (420) Q Consensus 338 DG~~~~~~~---------------------------------------------------------------~~~~~~~c 354 (420) ||.++.... +..+..+| T Consensus 129 DG~~~~~~~~~~~~~~~~~~~~v~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 208 (269) T 2ww8_A 129 DGVPTMSYPINFNHATFAPSYQNQLNAFFSKSPNKDGILLSDFITQATSGEHTIVRGDGQSNSNTAKITNHGDPTRWYYN 208 (269) T ss_dssp SSCCSEECCBCCCCSTTCCCHHHHHHHHHHTSTTSSSCCGGGBCCCCTTCGGGTCEECSSCTCSSCCBCBSHHHHHHHHH T ss_pred CCCCCEEECCCCCCCCCCEEEECCCEEEEEECCCCCEEEECCEEEEECCCCCEEECCCCEECCCCEEEEECCCCEEEEEE T ss_conf 66310000013445410047631310566511211206611101231012210203774275320576204743057887 Q ss_pred HHHHHCCCEEEEEEECCCCC-------HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHC Q ss_conf 99997898799999548977-------8999998621898279817989999999999987420 Q gi|254781110|r 355 DKAKENFIKIVTISINASPN-------GQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVH 411 (420) Q Consensus 355 ~~~k~~gi~i~tIgf~~~~~-------~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia~~I~~ 411 (420) +++|++||+||||||+.+.+ ++++|+.|||+|+|||+|+ ||.++|+.|+++|-+ T Consensus 209 ~~~k~~~i~i~ti~~~~~~~~~~~~~~~~~~l~~cas~~~~y~~~~---~~~~~f~~ia~~~~~ 269 (269) T 2ww8_A 209 GNIAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENYTNVT---DTTKILEQLNRYFHT 269 (269) T ss_dssp HHTGGGCCEEEEEEESCCCTTTSCHHHHHHHHHHTSSSGGGEEEES---SGGGHHHHHHHHHTT T ss_pred EECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEC---CCCCEECCCCCCCEE T ss_conf 5204676303577677156421002343057756611665326405---665111133554127 No 2 >>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* (D:199-457) Probab=99.69 E-value=4.2e-15 Score=116.47 Aligned_cols=193 Identities=17% Similarity=0.190 Sum_probs=141.6 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312 Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420) Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420) .....++.|++|.|+||. ..+++..+.++..+++.+... ....+++++.|++..... T Consensus 42 ~~~~~div~viD~SgSm~--------------------~~~~~~~k~~~~~~~~~~~~~---~~~~~v~lv~f~~~~~~~ 98 (259) T 3hrz_D 42 PSGSMNIYLVLDGSGSIG--------------------ASDFTGAKKCLVNLIEKVASY---GVKPRYGLVTYATYPKIW 98 (259) T ss_dssp TTCEEEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESSSEEEE T ss_pred CCCCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEE T ss_conf 777556799983477047--------------------788999999999999865578---898689999967951699 Q ss_pred CCCCCCHHH----HHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 445778488----9999998640--4678876538899999986131012334554334776778776662489960686 Q gi|254781110|r 267 IEPSWGTEK----VRQYVTRDMD--SLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGE 340 (420) Q Consensus 267 ~~lt~~~~~----~~~~i~~~~~--~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~ 340 (420) .+++..... ....++++.. ..++|+|++..|+..+.+.|..... ......++.+|++||+|||+ T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~~~~al~~a~~~l~~~~~----------~~~~~~~~~~~~iillTDG~ 168 (259) T 3hrz_D 99 VKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD----------VPPEGWNRTRHVIILMTDGL 168 (259) T ss_dssp ECTTSGGGGCHHHHHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC------------CCCTTGGGEEEEEEEEECSC T ss_pred EECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC----------CCCCCCCCCCEEEEEECCCC T ss_conf 85477776789999999972766567777756899999999997542102----------56665679987999983897 Q ss_pred CCCCCCCCHHHHH----------HHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC-C--CEEEECCHHHHHHHHHHHHH Q ss_conf 7777765348999----------999997898799999548977899999862189-8--27981798999999999998 Q gi|254781110|r 341 NNNFKSNVNTIKI----------CDKAKENFIKIVTISINASPNGQRLLKTCVSSP-E--YHYNVVNADSLIHVFQNISQ 407 (420) Q Consensus 341 ~~~~~~~~~~~~~----------c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~-~--~yf~a~~~~~L~~aF~~Ia~ 407 (420) ++........... +..+++.|+++|+||+|.+.+.. .|+..|+.+ | +||.+.+.++|.++|+.|.+ T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~igvg~~~~~~-~L~~iA~~~~g~~~~~~~~~~~~L~~~~~~i~~ 247 (259) T 3hrz_D 169 HNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQV-NINALASKKDNEQHVFKVKDMENLEDVFYQMID 247 (259) T ss_dssp CCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHH-HHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 6678884023332211345678899998789099999788868999-999997488987339995999999998754322 Q ss_pred HHHCCE Q ss_conf 742025 Q gi|254781110|r 408 LMVHRK 413 (420) Q Consensus 408 ~I~~lr 413 (420) .|-+.- T Consensus 248 ~i~~~~ 253 (259) T 3hrz_D 248 ESQSLS 253 (259) T ss_dssp HHSCTT T ss_pred HCCCCC T ss_conf 013553 No 3 >>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} (A:1-214) Probab=99.67 E-value=3.5e-15 Score=116.99 Aligned_cols=190 Identities=17% Similarity=0.202 Sum_probs=140.5 Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457 Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420) Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420) +++.+++|.|+||. ..+++.++.++..+++.+... ....|++++.|++......+++ T Consensus 2 lDvv~viD~SgSM~--------------------~~~~~~~k~~~~~~i~~l~~~---~~~~rv~iv~f~~~~~~~~~~~ 58 (214) T 1rrk_A 2 MNIYLVLDGSDSIG--------------------ASNFTGAKKVLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVS 58 (214) T ss_dssp EEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESSSEEEEECTT T ss_pred EEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCCC---CCCEEEEEEEECCEEEEEEECC T ss_conf 34999993778898--------------------689999999999999847678---9961999999888168998179 Q ss_pred CCHHHHHHHHHHH------HHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC Q ss_conf 7848899999986------4046788765388999999861310123345543347767787766624899606867777 Q gi|254781110|r 271 WGTEKVRQYVTRD------MDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF 344 (420) Q Consensus 271 ~~~~~~~~~i~~~------~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~ 344 (420) .........++.+ ....+.|+|+...++.++...+..... ......++.+|++|++|||..+.+ T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~~~~~~~~~----------~~~~~~~~~~~~iiliTDG~~~~~ 128 (214) T 1rrk_A 59 EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD----------VPPEGWNRTRHVIILMTDGLHNMG 128 (214) T ss_dssp SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC----------------CGGGCEEEEEEEECSCCCSS T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----------CCCCCCCCCCEEEEEEECCCCCCC T ss_conf 8775689999999971755787688876899999999999764112----------476555688769999979756678 Q ss_pred CCCCHHHHH----------HHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCC Q ss_conf 765348999----------999997898799999548977899999862189--82798179899999999999874202 Q gi|254781110|r 345 KSNVNTIKI----------CDKAKENFIKIVTISINASPNGQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHR 412 (420) Q Consensus 345 ~~~~~~~~~----------c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~l 412 (420) ......... +..+|+.+|.+|+||+|.+.+...+-+.|..++ .+||.+.+.++|.++|++|.++|.+. T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igig~~~~~~~l~~ia~~~~g~~~~~~~~~~~~l~~~~~~i~~~l~~~ 208 (214) T 1rrk_A 129 GDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQSL 208 (214) T ss_dssp SCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGGGT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHCCCCC T ss_conf 98489999999878888888878767949998347775799999977525787656166599999999998764324543 Q ss_pred E Q ss_conf 5 Q gi|254781110|r 413 K 413 (420) Q Consensus 413 r 413 (420) - T Consensus 209 ~ 209 (214) T 1rrk_A 209 S 209 (214) T ss_dssp T T ss_pred C T ss_conf 2 No 4 >>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* (A:1-224) Probab=99.63 E-value=1.5e-14 Score=112.81 Aligned_cols=197 Identities=15% Similarity=0.185 Sum_probs=144.8 Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCC Q ss_conf 44344320122102232422335787666675346766530678899989999851046787655430223204876431 Q gi|254781110|r 186 GERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEK 265 (420) Q Consensus 186 ~~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (420) ......++.+++|.|+||. ..+++.++.++..++..+... ....+++++.|++.... T Consensus 5 ~~~~~~div~viD~SgSM~--------------------~~~~~~~k~a~~~~~~~~~~~---~~~~~v~lv~f~~~~~~ 61 (224) T 2odp_A 5 QRSGHLNLYLLLDASQSVS--------------------ENDFLIFKESASLMVDRIFSF---EINVSVAIITFASEPKV 61 (224) T ss_dssp CSSSEEEEEEEEECSTTSC--------------------HHHHHHHHHHHHHHHHHHHTT---CCCEEEEEEEESSSEEE T ss_pred CCCCCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEE T ss_conf 7789876999995879898--------------------799999999999999853458---99619999998784369 Q ss_pred CCCCCCCHHHHHHH----HHHH--HHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 24457784889999----9986--40467887653889999998613101233455433477677877666248996068 Q gi|254781110|r 266 NIEPSWGTEKVRQY----VTRD--MDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDG 339 (420) Q Consensus 266 ~~~lt~~~~~~~~~----i~~~--~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG 339 (420) ..+++......... +... ....+.|+|++..|+.++.+.|.......... ....+..+|++|++||| T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~~~l~~~~~~~~~~-------~~~~~~~~~~iilitDg 134 (224) T 2odp_A 62 LMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGME-------TMAWQEIRHAIILLTDG 134 (224) T ss_dssp EECTTSGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTT-------SHHHHTEEEEEEEESCS T ss_pred EEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCCCEEEEEEECC T ss_conf 98279887557999999997175566778897779999999999998765420234-------56667886299999778 Q ss_pred CCCCCCCCCHHHH------HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHH Q ss_conf 6777776534899------9999997898799999548977899999862189---827981798999999999998742 Q gi|254781110|r 340 ENNNFKSNVNTIK------ICDKAKENFIKIVTISINASPNGQRLLKTCVSSP---EYHYNVVNADSLIHVFQNISQLMV 410 (420) Q Consensus 340 ~~~~~~~~~~~~~------~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~---~~yf~a~~~~~L~~aF~~Ia~~I~ 410 (420) .++.......... .+..+|+.||.||+||++.+......|+..|+.+ .+||.+.+.++|.++|+.|.+.|. T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~i~ig~~~~~~~~l~~ia~~~~g~~~~~~~~~~~~l~~~~~~i~~~i~ 214 (224) T 2odp_A 135 KSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSK 214 (224) T ss_dssp CCCSSSCTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEECTT T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCC T ss_conf 54468852789999876589999986697799995058655999999986388987249995898999999987502211 Q ss_pred CC Q ss_conf 02 Q gi|254781110|r 411 HR 412 (420) Q Consensus 411 ~l 412 (420) +- T Consensus 215 ~~ 216 (224) T 2odp_A 215 LT 216 (224) T ss_dssp CC T ss_pred CC T ss_conf 14 No 5 >>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} (X:) Probab=99.62 E-value=1.1e-13 Score=107.11 Aligned_cols=177 Identities=15% Similarity=0.094 Sum_probs=139.2 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCC Q ss_conf 34432012210223242233578766667534676653067889998999985104678765543022320487643124 Q gi|254781110|r 188 RPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNI 267 (420) Q Consensus 188 ~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (420) ....++.+++|.|+||. ....+..+.+...+.+.+ ....+++++.|++...... T Consensus 4 ~~~~div~viD~SgSM~--------------------~~~~~~~~~~~~~~~~~~------~~~~~~~iv~f~~~~~~~~ 57 (182) T 1shu_X 4 RRAFDLYFVLDKSGSVA--------------------NNWIEIYNFVQQLAERFV------SPEMRLSFIVFSSQATIIL 57 (182) T ss_dssp BSCEEEEEEEECSGGGG--------------------GGHHHHHHHHHHHHHHCC------CTTEEEEEEEESSSEEEEE T ss_pred CCCEEEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHC------CCCCEEEEEEECCCEEECC T ss_conf 99747999993787854--------------------379999999999999735------8997799999515402627 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 45778488999999864046788765388999999861310123345543347767787766624899606867777765 Q gi|254781110|r 268 EPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420) Q Consensus 268 ~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420) +++............+....++|+|+...++..+...+.... .....|++|++|||+++.... T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~~~~~~~~----------------~~~~~~~~ilitdg~~~~~~~- 120 (182) T 1shu_X 58 PLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAG----------------GLKTSSIIIALTDGKLDGLVP- 120 (182) T ss_dssp EEECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHT----------------GGGSCEEEEEEECCCCCTTHH- T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC----------------CCCCCCEEEEECCCCCCCCCC- T ss_conf 877879999999877653046786257899999998764211----------------368861799914787788863- Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCC-CCCEEEECCHHHHHHHHHHHHHHH Q ss_conf 34899999999789879999954897789999986218-982798179899999999999874 Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSS-PEYHYNVVNADSLIHVFQNISQLM 409 (420) Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~-~~~yf~a~~~~~L~~aF~~Ia~~I 409 (420) ......+..+++.||+||+||+|... ...|+.+++. +++||.+++.++|.++|+.|.+.| T Consensus 121 ~~~~~~~~~~~~~~i~i~~ig~g~~~--~~~l~~ia~~~~g~~~~~~~~~~l~~~~~~i~~~i 181 (182) T 1shu_X 121 SYAEKEAKISRSLGASVYCVGVLDFE--QAQLERIADSKEQVFPVKGGFQALKGIINSILAQS 181 (182) T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSCC--HHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHHTB T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH T ss_conf 89999999999779889999978559--99999986899974993499999999999998633 No 6 >>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} (A:) Probab=99.57 E-value=1.7e-13 Score=105.98 Aligned_cols=192 Identities=16% Similarity=0.186 Sum_probs=140.5 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312 Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420) Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420) .....++.|++|.|+||. ..+++.++.++..+++.+... ....|++++.|++..... T Consensus 12 ~~~~~div~viD~SgSM~--------------------~~~~~~~k~a~~~~~~~~~~~---~~~~rv~iv~f~~~~~~~ 68 (223) T 1q0p_A 12 PSGSMNIYLVLDGSDSIG--------------------ASNFTGAKKSLVNLIEKVASY---GVKPRYGLVTYATYPKIW 68 (223) T ss_dssp ---CEEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHHHHTT---TCCCEEEEEEESSSEEEE T ss_pred CCCCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEECCCEEEE T ss_conf 999877999994888898--------------------289999999999999975447---988589999977945999 Q ss_pred CCCCCCHHHH----HHHHHHHH--HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 4457784889----99999864--04678876538899999986131012334554334776778776662489960686 Q gi|254781110|r 267 IEPSWGTEKV----RQYVTRDM--DSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGE 340 (420) Q Consensus 267 ~~lt~~~~~~----~~~i~~~~--~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~ 340 (420) .+++...... ...+..+. ...+.++|+...++.++...+...... .....+..+|++|++|||. T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~al~~a~~~~~~~~~~----------~~~~~~~~~~~iil~tdG~ 138 (223) T 1q0p_A 69 VKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV----------PPEGWNRTRHVIILMTDGL 138 (223) T ss_dssp ECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSS----------CCTTGGGCEEEEEEEECSC T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC----------CCCCCCCCCEEEEEECCCC T ss_conf 982565301178888876421202357889867999999999998740124----------6666677752899972787 Q ss_pred CCCCCCCCHHHHHHHH----------HHHCCCEEEEEEECCCCCHHHHHHHHHCCC-C--CEEEECCHHHHHHHHHHHHH Q ss_conf 7777765348999999----------997898799999548977899999862189-8--27981798999999999998 Q gi|254781110|r 341 NNNFKSNVNTIKICDK----------AKENFIKIVTISINASPNGQRLLKTCVSSP-E--YHYNVVNADSLIHVFQNISQ 407 (420) Q Consensus 341 ~~~~~~~~~~~~~c~~----------~k~~gi~i~tIgf~~~~~~~~~l~~cas~~-~--~yf~a~~~~~L~~aF~~Ia~ 407 (420) .+..........-+.. ++..++.+|+||+|...+.. .|+..|+.+ | +||.+.+.++|.++|+.|.+ T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ig~g~~~~~~-~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~i~~ 217 (223) T 1q0p_A 139 HNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQV-NINALASKKDNEQHVFKVKDMENLEDVFYQMID 217 (223) T ss_dssp CCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHH-HHHHHSCCCTTCCCEEETTC------------- T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH-HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 6678980789999988666789999998669806987468757999-999998088997279993999999999999987 Q ss_pred HHHCC Q ss_conf 74202 Q gi|254781110|r 408 LMVHR 412 (420) Q Consensus 408 ~I~~l 412 (420) .|... T Consensus 218 ~i~~v 222 (223) T 1q0p_A 218 ESQSL 222 (223) T ss_dssp ----C T ss_pred HHCCC T ss_conf 50578 No 7 >>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} (A:) Probab=99.56 E-value=3.2e-13 Score=104.23 Aligned_cols=174 Identities=10% Similarity=0.034 Sum_probs=134.9 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420) +.++.|++|.|+||. ..++...+..+..+++.+... +...|++++.|++......++ T Consensus 2 p~DivfllD~S~SM~--------------------~~~~~~~k~~~~~~i~~~~~~---~~~~rv~lv~f~~~~~~~~~l 58 (184) T 3gxb_A 2 VLDVAFVLEGSDKIG--------------------EADFNRSKEFMEEVIQRMDVG---QDSIHVTVLQYSYMVTVEYPF 58 (184) T ss_dssp CEEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHTSCBC---TTSEEEEEEEESSSEEEEECT T ss_pred CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEEEEEEEEECCC T ss_conf 058999997989989--------------------799999999999999965658---886089999983124565176 Q ss_pred CCCHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC Q ss_conf 77848899999986404-67887653889999998613101233455433477677877666248996068677777653 Q gi|254781110|r 270 SWGTEKVRQYVTRDMDS-LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV 348 (420) Q Consensus 270 t~~~~~~~~~i~~~~~~-~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~ 348 (420) +...+............ .++|+|+...++..+.+.+..... ...+..+|++|++|||..+.... T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~~~~~~~~~-------------~~~~~~~~~ivl~TDG~~~~~~~-- 123 (184) T 3gxb_A 59 SEAQSKGDILQRVREIRYQGGNRTNTGLALRYLSDHSFLVSQ-------------GDREQAPNLVYMVTGNPASDEIK-- 123 (184) T ss_dssp TSCCCHHHHHHHHHTCCCCCCSCCCHHHHHHHHHHTGGGSCC-------------GGGGGSCEEEEEEECSCCSSCCC-- T ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC-------------CCCCCCCEEEEEECCCCCCHHHH-- T ss_conf 433677999998712100363033589999999998615134-------------89889856999966999705789-- Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHC Q ss_conf 489999999978987999995489778999998621898279817989999999999987420 Q gi|254781110|r 349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVH 411 (420) Q Consensus 349 ~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia~~I~~ 411 (420) .+.+|++||+||+|.+.+. ..|+..++ ++++|.+.+.++|.++|+.|.+.|.. T Consensus 124 --------~~~~~~~i~~igig~~~~~-~~l~~ia~-~~~~~~~~~~~~l~~~~~~i~~~l~~ 176 (184) T 3gxb_A 124 --------RLPGDIQVVPIGVGPNANV-QELERIGW-PNAPILIQDFETLPREAPDLVLQRCC 176 (184) T ss_dssp --------CCCTTEEEEEEEESTTSCH-HHHHHHHT-TSCCEEESCTTTHHHHHHHHHHHHHC T ss_pred --------HHHCCCEEEEEEECCCCCH-HHHHHHCC-CCCEEEECCHHHHHHHHHHHHHHHCC T ss_conf --------8742785999994561589-99998739-99679938999999999999975569 No 8 >>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for structural genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} (A:) Probab=99.56 E-value=8.8e-13 Score=101.34 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=139.9 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312 Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420) Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420) .....++.+++|.|+||..... ...|++.++.++..+...+. ..|++++.|++..... T Consensus 8 ~~~~~div~vlD~S~Sm~~~~~---------------~~~rl~~~k~~v~~l~~~~~-------~~rv~iv~f~~~~~~~ 65 (218) T 3ibs_A 8 KRKGVEVIIALDISNSXLAQDV---------------QPSRLEKAKRLISRLVDELD-------NDKVGXIVFAGDAFTQ 65 (218) T ss_dssp --CCCEEEEEEECSGGGGCCSS---------------SSCHHHHHHHHHHHHHHTCS-------SCEEEEEEESSSEEEE T ss_pred CCCCCEEEEEEECCCCCCCCCC---------------CCCHHHHHHHHHHHHHHHCC-------CCEEEEEEECCCCCCC T ss_conf 4179479999978747688877---------------83799999999999996489-------9658999989812112 Q ss_pred CCCCCCHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC Q ss_conf 4457784889999998640-467887653889999998613101233455433477677877666248996068677777 Q gi|254781110|r 267 IEPSWGTEKVRQYVTRDMD-SLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK 345 (420) Q Consensus 267 ~~lt~~~~~~~~~i~~~~~-~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~ 345 (420) .+++.+.......+..+.. ..++|+|++..||.++.+.|... +...+.+|++|||..+... T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~g~T~~~~aL~~a~~~l~~~------------------~~~~~~~i~itDG~~~~~~ 127 (218) T 3ibs_A 66 LPITSDYISAKXFLESISPSLISKQGTAIGEAINLATRSFTPQ------------------EGVGRAIIVITDGENHEGG 127 (218) T ss_dssp EEEESCHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSC------------------SSCCEEEEEEECCTTCCSC T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHH------------------HCCCCCEEEECCCCCCCCC T ss_conf 0354256677777876233666689945789999775330110------------------0456534994389877775 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEECCCC-------------------------CHHHHHHHHHCCCCCEEEECCHHHHHH Q ss_conf 6534899999999789879999954897-------------------------789999986218982798179899999 Q gi|254781110|r 346 SNVNTIKICDKAKENFIKIVTISINASP-------------------------NGQRLLKTCVSSPEYHYNVVNADSLIH 400 (420) Q Consensus 346 ~~~~~~~~c~~~k~~gi~i~tIgf~~~~-------------------------~~~~~l~~cas~~~~yf~a~~~~~L~~ 400 (420) .......+++.++.+|+++++.+. +...+-+.|....++||.+++.++|.+ T Consensus 128 ----~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~g~~~~~~~~~~l~~ 203 (218) T 3ibs_A 128 ----AVEAAKAAAEKGIQVSVLGVGXPEGAPIPVEGTNDYRRDREGNVIVTRLNEGXCQEIAKDGKGIYVRVDNSNSAQK 203 (218) T ss_dssp ----HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHH T ss_pred ----CHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHH T ss_conf ----0466677664065376530477655443201222201024675454547999999999854908999518799999 Q ss_pred HHHH-HHH Q ss_conf 9999-998 Q gi|254781110|r 401 VFQN-ISQ 407 (420) Q Consensus 401 aF~~-Ia~ 407 (420) .|.+ |.+ T Consensus 204 ~~~~~i~~ 211 (218) T 3ibs_A 204 AISQEISK 211 (218) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999976 No 9 >>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} (A:) Probab=99.54 E-value=2.7e-13 Score=104.68 Aligned_cols=174 Identities=14% Similarity=0.116 Sum_probs=131.5 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC Q ss_conf 44320122102232422335787666675346766530678899989999851046787655430223204876431244 Q gi|254781110|r 189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE 268 (420) Q Consensus 189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (420) ...++.+++|.|+||. ..+++.++.++..++..+... ....+++++.|++......+ T Consensus 4 ~~~di~~~iD~S~SM~--------------------~~~~~~~k~~~~~~i~~~~~~---~~~~~~~iv~f~~~~~~~~~ 60 (189) T 1atz_A 4 QPLDVILLLDGSSSFP--------------------ASYFDEMKSFAKAFISKANIG---PRLTQVSVLQYGSITTIDVP 60 (189) T ss_dssp CCEEEEEEEECSSSSC--------------------HHHHHHHHHHHHHHHHHSCBS---TTSEEEEEEEESSSEEEEEC T ss_pred CCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCEEEEEE T ss_conf 8358999995889989--------------------899999999999999973548---87758999961231469972 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC Q ss_conf 57784889999998640467887653889999998613101233455433477677877666248996068677777653 Q gi|254781110|r 269 PSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV 348 (420) Q Consensus 269 lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~ 348 (420) ++...................|+|....++.++...+..... ...+...+++|++|||.++.. T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~ii~iTDG~~~~~---- 123 (189) T 1atz_A 61 WNVVPEKAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEMH-------------GARPGASKAVVILVTDVSVDS---- 123 (189) T ss_dssp TTCCCCHHHHHHHHHTCCCCCCCCCHHHHHHHHHHHHHSCCT-------------TCCTTSEEEEEEEECSCCSSC---- T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-------------CCCCCCCEEEEEECCCCCCCH---- T ss_conf 685217899999998877632000013666678888645640-------------798898538999727987523---- Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC-CCC-CEEEECCHHHHHHHHHHH Q ss_conf 489999999978987999995489778999998621-898-279817989999999999 Q gi|254781110|r 349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVS-SPE-YHYNVVNADSLIHVFQNI 405 (420) Q Consensus 349 ~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas-~~~-~yf~a~~~~~L~~aF~~I 405 (420) ....++.+|++||+||+||+|.+.+... |+..|. ++| +||..+..+ +.+.+..+ T Consensus 124 -~~~~~~~~~~~~v~i~~igig~~~~~~~-l~~ia~~~~g~~~~~~~~~~-~~~~l~~~ 179 (189) T 1atz_A 124 -VDAAADAARSNRVTVFPIGIGDRYDAAQ-LRILAGPAGDSNVVKLQRIE-DLPTMVTL 179 (189) T ss_dssp -CHHHHHHHHHTTEEEEEEEESSSSCHHH-HHHHTGGGGGGGCEEESSTT-HHHHHHHS T ss_pred -HHHHHHHHHHCCCEEEEEEECCCCCHHH-HHHHHCCCCCCCEEEECCHH-HHHHHHHH T ss_conf -7799999985683699998578489999-99985688867479836886-78889999 No 10 >>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} (A:) Probab=99.54 E-value=3e-12 Score=97.88 Aligned_cols=186 Identities=10% Similarity=0.114 Sum_probs=140.0 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312 Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420) Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420) .....++.+++|.|+||. ..+++..+.++..++..+... ....+++++.|++..... T Consensus 10 ~~~~~div~vlD~SgSM~--------------------~~~~~~~k~~~~~l~~~~~~~---~~~~~v~iv~f~~~~~~~ 66 (202) T 1ijb_A 10 CSRLLDLVFLLDGSSRLS--------------------EAEFEVLKAFVVDMMERLRVS---QKWVRVAVVEYHDGSHAY 66 (202) T ss_dssp BCSCEEEEEEEECBTTSC--------------------HHHHHHHHHHHHHHHHTBCBS---TTSEEEEEEEESSSEEEE T ss_pred CCCCEEEEEEEECCCCCC--------------------CHHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEECCCCCCC T ss_conf 888620899996988888--------------------577999999999999998517---999789999978963021 Q ss_pred CCCCCCHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC Q ss_conf 445778488999999864-0467887653889999998613101233455433477677877666248996068677777 Q gi|254781110|r 267 IEPSWGTEKVRQYVTRDM-DSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK 345 (420) Q Consensus 267 ~~lt~~~~~~~~~i~~~~-~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~ 345 (420) .+++.............. ....+++|+...++..+...+.... ......++++++|||+.+... T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~al~~a~~~~~~~~---------------~~~~~~~~~i~itdg~~~~~~ 131 (202) T 1ijb_A 67 IGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKI---------------DRPEASRIALLLMASQEPQRM 131 (202) T ss_dssp ECTTCCCCHHHHHHHHHTCCCCCBSCCCHHHHHHHHHHHTSSSC---------------SCTTSEEEEEEEECCCCCGGG T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC---------------CCCCCCCEEEEEEECCCCCCC T ss_conf 03453345789999997430223323444067899999986401---------------345567538999815888877 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH--CCCCCEEEECCHHHHHHHHHHHHHHHHCC Q ss_conf 65348999999997898799999548977899999862--18982798179899999999999874202 Q gi|254781110|r 346 SNVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCV--SSPEYHYNVVNADSLIHVFQNISQLMVHR 412 (420) Q Consensus 346 ~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~ca--s~~~~yf~a~~~~~L~~aF~~Ia~~I~~l 412 (420) .. ........++..++.||+||++.+.+... |+..| .++.++|.+++.++|.++++.|.+.|... T Consensus 132 ~~-~~~~~~~~~~~~~~~i~~igig~~~~~~~-l~~ia~~~~g~~~~~~~~~~~l~~~~~~i~~~l~~~ 198 (202) T 1ijb_A 132 SR-NFVRYVQGLKKKKVIVIPVGIGPHANLKQ-IRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDL 198 (202) T ss_dssp CT-THHHHHHHHHHTTEEEEEEEESTTSCHHH-HHHHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHHH T ss_pred CC-HHHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHCC T ss_conf 50-16789987531795899999587349999-999985689986798589999999999999997255 No 11 >>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} (A:1-252) Probab=99.46 E-value=1.2e-12 Score=100.52 Aligned_cols=188 Identities=10% Similarity=0.016 Sum_probs=131.1 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC Q ss_conf 44320122102232422335787666675346766530678899989999851046787655430223204876431244 Q gi|254781110|r 189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE 268 (420) Q Consensus 189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (420) ...++.|++|+|+||...... ...+|++.++.++..++..+... ....+++++.|++......+ T Consensus 34 ~~~div~viD~S~SM~~~~~~-------------~~~s~~~~~k~~~~~~i~~l~~~---~~~~~v~iv~f~~~~~~~~~ 97 (252) T 1jey_A 34 GRDSLIFLVDASKAMFESQSE-------------DELTPFDMSIQCIQSVYISKIIS---SDRDLLAVVFYGTEKDKNSV 97 (252) T ss_dssp CEEEEEEEEECSGGGGCCCSS-------------SSCCHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESCSSCBSTT T ss_pred CCEEEEEEEECCHHHCCCCCC-------------CCCCHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCCCCCCC T ss_conf 845999999898788787888-------------89784999999999999961667---99981899997368988888 Q ss_pred ----------CCCCHHHHHHHH----HH------HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf ----------577848899999----98------6404678876538899999986131012334554334776778776 Q gi|254781110|r 269 ----------PSWGTEKVRQYV----TR------DMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLP 328 (420) Q Consensus 269 ----------lt~~~~~~~~~i----~~------~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 328 (420) ++.........+ +. .....+.|+|+...||..+...|.... .+. T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~~~l~~~~----------------~~~ 161 (252) T 1jey_A 98 NFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQ----------------FKM 161 (252) T ss_dssp CCTTEEEEEEEECCCHHHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCS----------------SCE T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC----------------CCC T ss_conf 9870799504888799999999976402331022103676654439999999999998613----------------023 Q ss_pred CCCEEEEEECCCCCCCCCCC---HHHHHHHHHHHCCCEEEEEEECCCCCH------HHHHHHHHC-CCCCEEEECCHHHH Q ss_conf 66248996068677777653---489999999978987999995489778------999998621-89827981798999 Q gi|254781110|r 329 FQKFIIFLTDGENNNFKSNV---NTIKICDKAKENFIKIVTISINASPNG------QRLLKTCVS-SPEYHYNVVNADSL 398 (420) Q Consensus 329 ~~k~iil~TDG~~~~~~~~~---~~~~~c~~~k~~gi~i~tIgf~~~~~~------~~~l~~cas-~~~~yf~a~~~~~L 398 (420) .+|+||++|||+++...... .....++.+++.||++|+|+++.+.+. ..+++.++. ++++||.+.+ .| T Consensus 162 ~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l 239 (252) T 1jey_A 162 SHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESS--KL 239 (252) T ss_dssp EEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCCTTTTGGGTCC--------CCCCCBC--SH T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHH--HH T ss_conf 6747999889998788753779999999999997090478834688898761031687741113322234665156--69 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999998742 Q gi|254781110|r 399 IHVFQNISQLMV 410 (420) Q Consensus 399 ~~aF~~Ia~~I~ 410 (420) .++++.|.+.++ T Consensus 240 ~~~~~~i~~~~~ 251 (252) T 1jey_A 240 EDLLRKVRAKET 251 (252) T ss_dssp HHHHHHHHHHHS T ss_pred HHHHHHHHHCCC T ss_conf 999987642200 No 12 >>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} (A:) Probab=99.45 E-value=1.9e-12 Score=99.21 Aligned_cols=186 Identities=15% Similarity=0.119 Sum_probs=137.8 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312 Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420) Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420) .+...++.+++|.|+||. ..+++.++.++..+++.+.. ...+++++.|++..... T Consensus 6 ~~~~~di~~viD~SgSM~--------------------~~~~~~~k~~~~~~~~~l~~-----~~~~~~iv~f~~~~~~~ 60 (198) T 1n3y_A 6 SRQEQDIVFLIDGSGSIS--------------------SRNFATMMNFVRAVISQFQR-----PSTQFSLMQFSNKFQTH 60 (198) T ss_dssp --CCEEEEEEEECCTTSC--------------------HHHHHHHHHHHHHHHTTSCT-----TTEEEEEEEESSSEEEE T ss_pred CCCCCCEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCC-----CCCEEEEEEEECCCCCC T ss_conf 788875899997989989--------------------89999999999999996398-----88589999984352203 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC Q ss_conf 44577848899999986404678876538899999986131012334554334776778776662489960686777776 Q gi|254781110|r 267 IEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKS 346 (420) Q Consensus 267 ~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~ 346 (420) .+++...................++|....++..+......... ......+|++|++|||+++.... T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~iiliTDG~~~~~~~ 127 (198) T 1n3y_A 61 FTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASY-------------GARRDAAKILIVITDGKKEGDSL 127 (198) T ss_dssp ECHHHHHHCSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGG-------------TCCTTSEEEEEEEESSCCBSCSS T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHC-------------CCCCCCCCEEEEEECCCCCCCHH T ss_conf 67765110789999998766235997088999999998614310-------------79877630599994589888622 Q ss_pred CCHHHHHHHHHHHCCCEEEEEEECCCC---CHHHHHHHHHC-CC-CCEEEECCHHHHHHHHHHHHHHHHCC Q ss_conf 534899999999789879999954897---78999998621-89-82798179899999999999874202 Q gi|254781110|r 347 NVNTIKICDKAKENFIKIVTISINASP---NGQRLLKTCVS-SP-EYHYNVVNADSLIHVFQNISQLMVHR 412 (420) Q Consensus 347 ~~~~~~~c~~~k~~gi~i~tIgf~~~~---~~~~~l~~cas-~~-~~yf~a~~~~~L~~aF~~Ia~~I~~l 412 (420) ......+.+++.||.+|+|+++... .....|+..|+ ++ .++|.+.+.++|.++|+.|.+.|.++ T Consensus 128 --~~~~~~~~~~~~~i~i~~i~i~~~~~~~~~~~~l~~ia~~~~g~~~~~~~~~~~l~~~~~~i~~~l~~v 196 (198) T 1n3y_A 128 --DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAI 196 (198) T ss_dssp --CHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHTC T ss_pred --HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC T ss_conf --199999999978988999997776567445999999856998650898289999999999999875057 No 13 >>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} (A:) Probab=99.44 E-value=7.8e-12 Score=95.16 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=133.3 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312 Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420) Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420) .....++.|++|.|+||. .++..+.+...++..+... .+..+++++.|++..... T Consensus 19 ~~~~~di~~viD~SgSM~----------------------~~~~~~~~~~~~~~~l~~~---~~~~~v~ii~f~~~~~~~ 73 (223) T 2b2x_A 19 CSTQLDIVIVLDGSNSIY----------------------PWESVIAFLNDLLKRMDIG---PKQTQVGIVQYGENVTHE 73 (223) T ss_dssp ---CEEEEEEEECSTTCC----------------------CHHHHHHHHHHHHTTSCCS---TTSCCEEEEEESSSEEEE T ss_pred CCCCEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHHCCC---CCCEEEEEEEEECCEEEE T ss_conf 998657999995889872----------------------7999999999998663458---886079999974005785 Q ss_pred CCCCCCHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC Q ss_conf 445778488999999864-0467887653889999998613101233455433477677877666248996068677777 Q gi|254781110|r 267 IEPSWGTEKVRQYVTRDM-DSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK 345 (420) Q Consensus 267 ~~lt~~~~~~~~~i~~~~-~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~ 345 (420) .+++.............. .....|+|+...++..+...+..... ......+|+++++|||.++... T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ivliTDG~~~~~~ 140 (223) T 2b2x_A 74 FNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEAR-------------GARRGVKKVMVIVTDGESHDNY 140 (223) T ss_dssp ECTTTCCSHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGG-------------TCCTTSEEEEEEEESSCCTTGG T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------CCCCCCCEEEEEEECCCCCCCH T ss_conf 275455679999999975454433201015778777776224323-------------7887873379998468877623 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCC Q ss_conf 65348999999997898799999548977--------899999862189--82798179899999999999874202 Q gi|254781110|r 346 SNVNTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHR 412 (420) Q Consensus 346 ~~~~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~l 412 (420) .....+..++..+|+||+||+|.+.+ ....|+.+|+.+ .++|.+++.++|.++|+.|.+.|... T Consensus 141 ---~~~~~~~~~~~~~i~i~~igig~~~~~~~~~~~~~~~~l~~ia~~~~g~~~~~~~~~~~L~~~~~~i~~~~~~~ 214 (223) T 2b2x_A 141 ---RLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFAL 214 (223) T ss_dssp ---GHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC-- T ss_pred ---HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCC T ss_conf ---38999999975398799999706655443343247999999856998661898389999999999999986215 No 14 >>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} (C:) Probab=99.41 E-value=1.4e-11 Score=93.52 Aligned_cols=182 Identities=17% Similarity=0.146 Sum_probs=121.2 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC Q ss_conf 44320122102232422335787666675346766530678899989999851046787655430223204876431244 Q gi|254781110|r 189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE 268 (420) Q Consensus 189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (420) ...++.+++|.|+||. ...++..++.++..+++.+ ....+++++.|++......+ T Consensus 5 ~~~div~viD~SgSM~-------------------~~~~~~~~~~~~~~~~~~~------~~~~~v~iv~f~~~~~~~~~ 59 (200) T 1v7p_C 5 SLIDVVVVCDESNSIY-------------------PWDAVKNFLEKFVQGLDIG------PTKTQVGLIQYANNPRVVFN 59 (200) T ss_dssp -CEEEEEEEECCTTCC-------------------CHHHHHHHHHHHHHTSCBS------TTSEEEEEEEESSSEEEEEC T ss_pred CCEEEEEEEECCCCCC-------------------CHHHHHHHHHHHHHHCCCC------CCCEEEEEEEEEEEEEEECC T ss_conf 6167999996989871-------------------6999999999999971658------88518999998514557517 Q ss_pred CCCCHHH--HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC Q ss_conf 5778488--99999986404678876538899999986131012334554334776778776662489960686777776 Q gi|254781110|r 269 PSWGTEK--VRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKS 346 (420) Q Consensus 269 lt~~~~~--~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~ 346 (420) ++..... .......+.. ...++.........+...+.... ....+..++++|++|||.++... T Consensus 60 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~iil~TDG~~~~~~- 124 (200) T 1v7p_C 60 LNTYKTKEEMIVATSQTSQ-YGGDLTNTFGAIQYARKYAYSAA-------------SGGRRSATKVMVVVTDGESHDGS- 124 (200) T ss_dssp TTTCSSHHHHHHHHHHCCC-CCCSCCCHHHHHHHHHHHTTSGG-------------GTCCTTSEEEEEEEESSCCSCGG- T ss_pred CCHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCC-------------CCCCCCCCEEEEEEECCCCCCCC- T ss_conf 6502578999998753321-02576445899998887524633-------------48987751489997068878740- Q ss_pred CCHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCC Q ss_conf 5348999999997898799999548977--------899999862189--82798179899999999999874202 Q gi|254781110|r 347 NVNTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHR 412 (420) Q Consensus 347 ~~~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~l 412 (420) ......+.+++.||+||+||+|.+.+ ....|+..|..+ .++|.+++.++|.++|+.|.+.|..+ T Consensus 125 --~~~~~~~~~~~~~v~i~~igvg~~~~~~~~~~~~~~~~l~~ia~~~~g~~~~~~~~~~~l~~~~~~i~~~i~~~ 198 (200) T 1v7p_C 125 --MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFSI 198 (200) T ss_dssp --GHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHTC T ss_pred --HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf --12699999986896899999656444465442005999999965986113998199999999999999773356 No 15 >>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} (B:1-236,B:463-505) Probab=99.40 E-value=2.6e-11 Score=91.73 Aligned_cols=185 Identities=10% Similarity=0.000 Sum_probs=123.0 Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 32012210223242233578766667534676653067889998999985104678765543022320487643124457 Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPS 270 (420) Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 270 (420) .++.+++|+|+||...... ..+|++.++.++..++..+... ....+++++.|++........+ T Consensus 8 ~~ivlviD~SgSM~~~~~~--------------~~tr~~~ak~a~~~li~~~~~~---~~~d~vgiv~F~~~~~~~~~~~ 70 (279) T 1jey_B 8 AAVVLCMDVGFTMSNSIPG--------------IESPFEQAKKVITMFVQRQVFA---ENKDEIALVLFGTDGTDNPLSG 70 (279) T ss_dssp EEEEEEEECCGGGGCCBTT--------------BCCHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESCSSCBSTTCT T ss_pred CEEEEEEECCHHHCCCCCC--------------CCCHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEECCCCCCCCCCC T ss_conf 6399999898677677889--------------9997999999999999987238---9998799999834788875555 Q ss_pred --------------CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf --------------784889999998640467887653889999998613101233455433477677877666248996 Q gi|254781110|r 271 --------------WGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFL 336 (420) Q Consensus 271 --------------~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~ 336 (420) ....+....+.... ...+|+|+...||..+...|..... ..+..+++||++ T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~T~~~~aL~~A~~~l~~~~~--------------~~~~~~~~Iili 135 (279) T 1jey_B 71 GDQYQNITVHRHLMLPDFDLLEDIESKI-QPGSQQADFLDALIVSMDVIQHETI--------------GKKFEKRHIEIF 135 (279) T ss_dssp TTCSTTEEEEEEEECCCHHHHHHHHTTC-CCCSSCCCHHHHHHHHHHHHHHHSS--------------SSCCSEEEEEEE T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHH--------------CCCCCCEEEEEE T ss_conf 5675654985558998999999998644-6887787879999999999998750--------------465454389998 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHH-----HHHHHC-CCCCEEEECCHHHHHHHHHHHHHHH Q ss_conf 068677777653489999999978987999995489778999-----998621-8982798179899999999999874 Q gi|254781110|r 337 TDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPNGQRL-----LKTCVS-SPEYHYNVVNADSLIHVFQNISQLM 409 (420) Q Consensus 337 TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~-----l~~cas-~~~~yf~a~~~~~L~~aF~~Ia~~I 409 (420) |||.++.... ....+++.+|+.||+||+||++........ +..++. +++.+|.+...+++...++.|.+-+ T Consensus 136 TDG~~~~~~~--~~~~~~~~l~~~~i~i~~Igig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 212 (279) T 1jey_B 136 TDLSSRFSKS--QLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVM 212 (279) T ss_dssp CCCCSCCCCT--THHHHHHHHHHTTEEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHH T ss_pred ECCCCCCCHH--HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 0799886878--9999999998659659996146665354664233302331124554312343211233200112100 No 16 >>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} (A:) Probab=99.39 E-value=5.9e-12 Score=95.96 Aligned_cols=184 Identities=14% Similarity=0.139 Sum_probs=137.2 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC Q ss_conf 44320122102232422335787666675346766530678899989999851046787655430223204876431244 Q gi|254781110|r 189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE 268 (420) Q Consensus 189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (420) ...++.|++|.|+||. ..+++.++.++..+++.+.. ...+++++.|++......+ T Consensus 4 ~~~di~fviD~SgSM~--------------------~~~~~~~k~~~~~~~~~l~~-----~~~~v~~v~f~~~~~~~~~ 58 (194) T 1mf7_A 4 EDSDIAFLIDGSGSII--------------------PHDFRRMKEFVSTVMEQLKK-----SKTLFSLMQYSEEFRIHFT 58 (194) T ss_dssp CCEEEEEEEECCTTSC--------------------HHHHHHHHHHHHHHHHHHCC-----TTEEEEEEEESSSEEEEEC T ss_pred CCEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCCC-----CCCEEEEEEEEEEEEEEEE T ss_conf 8816999993889988--------------------68999999999999997076-----8836999999621057630 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC Q ss_conf 57784889999998640467887653889999998613101233455433477677877666248996068677777653 Q gi|254781110|r 269 PSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV 348 (420) Q Consensus 269 lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~ 348 (420) ++.................+.|+|+...++..+.+.+...... ..+..++++|++|||+++...... T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~g~t~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~iiliTDG~~~~~~~~~ 125 (194) T 1mf7_A 59 FKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNG-------------ARKNAFKILVVITDGEKFGDPLGY 125 (194) T ss_dssp HHHHHHSCCHHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGT-------------CCTTSEEEEEEEESSCCBSCSSCG T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC-------------CCCCCEEEEEEEECCCCCCCCHHH T ss_conf 4554548999999850101359964207999999988645426-------------767850389998369988980329 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCC--C-HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCC Q ss_conf 4899999999789879999954897--7-899999862189--82798179899999999999874202 Q gi|254781110|r 349 NTIKICDKAKENFIKIVTISINASP--N-GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHR 412 (420) Q Consensus 349 ~~~~~c~~~k~~gi~i~tIgf~~~~--~-~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~l 412 (420) ....+.+++.+++++++.++... + ...+|+..|..+ .++|.+.+.++|.++|+.|.+.|.+. T Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~~ia~~~~g~~~~~~~~~~~l~~~~~~i~~~i~~~ 192 (194) T 1mf7_A 126 --EDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFCI 192 (194) T ss_dssp --GGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHTT T ss_pred --HHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCC T ss_conf --9999999978999999997887666357999999866998661899389999999999998764027 No 17 >>3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion molecule, calcium, cell adhesion, disulfide bond, glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* (A:125-315) Probab=99.38 E-value=3.5e-13 Score=103.97 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=133.5 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCC Q ss_conf 34432012210223242233578766667534676653067889998999985104678765543022320487643124 Q gi|254781110|r 188 RPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNI 267 (420) Q Consensus 188 ~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (420) ....++.|++|.|+||. ..+++.++.++..+++.+.. ...+++++.|++...... T Consensus 4 ~~~~div~viD~SgSM~--------------------~~~~~~~k~~~~~~~~~l~~-----~~~~v~ii~f~~~~~~~~ 58 (191) T 3k6s_A 4 RQEQDIVFLIDGSGSIS--------------------SRNFATMMNFVRAVISQFQR-----PSTQFSLMQFSNKFQTHF 58 (191) T ss_dssp CCCEEEEEEEECCTTSC--------------------SHHHHHHHHHHHHHHHSSCS-----SSEEEEEEEESSSEEEEE T ss_pred CCCCCEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHCCCC-----CCEEEEEEECCCCCEEEE T ss_conf 76631699982578546--------------------52168888999988750378-----861899995366611798 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 45778488999999864046788765388999999861310123345543347767787766624899606867777765 Q gi|254781110|r 268 EPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420) Q Consensus 268 ~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420) +++.................+.+.|+...++..+...+.... ....+..+|++|++|||+++.... T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ivlitDG~~~~~~~- 124 (191) T 3k6s_A 59 TFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHAS-------------YGARRDAAKILIVITDGKKEGDSL- 124 (191) T ss_dssp CSHHHHSCSCGGGGTTTCCCCCSCBCHHHHHHHHHTTTTSTT-------------TTCCSSSEEEEEEEESSCCBSCSS- T ss_pred ECHHCCCCCCHHHHHHEEEECCCCEEEEECHHHHHHHHCCCC-------------CCCCCCCCEEEEEEECCCCCCCCC- T ss_conf 611310333034343205622575012211334566423634-------------478889846999995686345753- Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHC--CCCCEEEECCHHHHHHHHHHHHHHH Q ss_conf 348999999997898799999548977---8999998621--8982798179899999999999874 Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPN---GQRLLKTCVS--SPEYHYNVVNADSLIHVFQNISQLM 409 (420) Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~---~~~~l~~cas--~~~~yf~a~~~~~L~~aF~~Ia~~I 409 (420) .....-..+++.+++||+|+|+.... ....|+..++ ++.++|.+.+.++|.++|+.|.+.| T Consensus 125 -~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~l~~ia~~~~g~~~~~~~~~~~l~~~~~~i~~~i 190 (191) T 3k6s_A 125 -DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKI 190 (191) T ss_dssp -CHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHH T ss_pred -CHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCHHHHHCCCCCCC T ss_conf -101111013304845899983354456431211000024798542488613320010100223552 No 18 >>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} (A:) Probab=99.35 E-value=4.1e-11 Score=90.46 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=124.3 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312 Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420) Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420) .....++.|++|.|+||. .++..+.+...+...+.. .....+++++.|++..... T Consensus 4 ~~~~~divfvlD~SgSM~----------------------~~~~~~~~~~~~~~~l~~---~~~~~~v~iv~f~~~~~~~ 58 (213) T 1pt6_A 4 CSTQLDIVIVLDGSNSIY----------------------PWDSVTAFLNDLLKRMDI---GPKQTQVGIVQYGENVTHE 58 (213) T ss_dssp ---CEEEEEEEECCTTCC----------------------CHHHHHHHHHHHHTTSCB---STTSBEEEEEEESSSEEEE T ss_pred CCCCEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHHCC---CCCCCEEEEEEEEEEEEEE T ss_conf 998448999997888876----------------------899999999999997145---8887389999996447899 Q ss_pred CCCCCCH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC Q ss_conf 4457784--88999999864046788765388999999861310123345543347767787766624899606867777 Q gi|254781110|r 267 IEPSWGT--EKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF 344 (420) Q Consensus 267 ~~lt~~~--~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~ 344 (420) .+++... ......+..+. ..+++....|...+........ ......+..+|++|++|||.++.. T Consensus 59 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~iiliTDG~~~~~ 124 (213) T 1pt6_A 59 FNLNKYSSTEEVLVAAKKIV---QRGGRQTMTALGTDTARKEAFT-----------EARGARRGVKKVMVIVTDGESHDN 124 (213) T ss_dssp ECTTTCSSHHHHHHHHHTCC---CCCCSSCCHHHHHHHHHHTTTS-----------GGGTCCTTCEEEEEEEESSCCSCS T ss_pred EECCCCCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHCC-----------CCCCCCCCCCEEEEEEECCCCCCC T ss_conf 82666676899999998787---6168545026777788887514-----------223777899547999956888884 Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCC--CCCEEEECCHHHHHHHHHHHHHHHHCCE Q ss_conf 765348999999997898799999548977--------89999986218--9827981798999999999998742025 Q gi|254781110|r 345 KSNVNTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSS--PEYHYNVVNADSLIHVFQNISQLMVHRK 413 (420) Q Consensus 345 ~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~--~~~yf~a~~~~~L~~aF~~Ia~~I~~lr 413 (420) . ........+|+.|++||+||+|.+.+ ....++..++. +++||.+.+.++|.++|+.|.+.|.+.. T Consensus 125 ~---~~~~~~~~~~~~~v~i~~igig~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~ 200 (213) T 1pt6_A 125 H---RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFALE 200 (213) T ss_dssp H---HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC-- T ss_pred H---HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCC T ss_conf 2---089999999988998999997166554443431359999998669985508992899999999999999983566 No 19 >>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia coli} (A:) Probab=99.31 E-value=9.1e-14 Score=107.73 Aligned_cols=176 Identities=12% Similarity=0.078 Sum_probs=134.3 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420) ..++.|++|.|+||. ..+++.++.++..+++.+... ..+.+.+.|++......++ T Consensus 2 p~divfliD~SgSM~--------------------~~~~~~~k~~~~~~i~~~~~~-----~~~~~~v~~~~~~~~~~~~ 56 (179) T 1mjn_A 2 NVDLVFLFDGSMSLQ--------------------PDEFQKILDFMKDVMKKCSNT-----SYQFAAVQFSTSYKTEFDF 56 (179) T ss_dssp CEEEEEEEECBTTCC--------------------HHHHHHHHHHHHHHHHHTTTS-----SEEEEEEEESSSEEEEECH T ss_pred CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHCCC-----CCCEEEEEEEEEEEEEECC T ss_conf 769999996879988--------------------799999999999999973635-----5632899997411575111 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH Q ss_conf 77848899999986404678876538899999986131012334554334776778776662489960686777776534 Q gi|254781110|r 270 SWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVN 349 (420) Q Consensus 270 t~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~ 349 (420) +...+..............+|+|+...++..+...+..... ...+..+++++++|||.++..... T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ii~~TDG~~~~~~~~-- 121 (179) T 1mjn_A 57 SDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREEL-------------GARPDATKVLIIITDGEATDSGNI-- 121 (179) T ss_dssp HHHHHHCCHHHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGG-------------TCCTTSEEEEEEEESSCCSSCSCC-- T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC-------------CCCCCCCEEEEEECCCCCCCCHHH-- T ss_conf 11026789999987323357985155889999998752201-------------899998248999807998863679-- Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHH Q ss_conf 8999999997898799999548977899999862189--82798179899999999999874 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLM 409 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I 409 (420) ..+.+|+++|+||+||+|.+.+. ..|+..|..+ .++|.+++.++|.++|+.|.+.| T Consensus 122 ---~~~~~~~~~v~v~~igiG~~~~~-~~L~~ia~~~~g~~~~~~~~~~~l~~~~~~i~~~i 179 (179) T 1mjn_A 122 ---DAAKDIIRYIIGIGKHFQTKESQ-ETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI 179 (179) T ss_dssp ---GGGTTSEEEEEEESGGGCSHHHH-HTTGGGSCSCHHHHEEEESSGGGSCCHHHHHHHHC T ss_pred ---HHHHCCCCCEEEEEEECCCCCCH-HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC T ss_conf ---99838735359998505740279-99999857998652998699899999999997039 No 20 >>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} (A:365-538) Probab=99.13 E-value=2.7e-09 Score=78.59 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=101.7 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC Q ss_conf 44320122102232422335787666675346766530678899989999851046787655430223204876431244 Q gi|254781110|r 189 PIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIE 268 (420) Q Consensus 189 ~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (420) ...++.+++|.|+||.....+. +...+..+...+.... ....+++++.|++......+ T Consensus 3 ~~~~vv~liD~SgSM~~~~~~~----------------~~~~~~~~~~~~~~~~------~~~~~v~li~F~~~~~~~~~ 60 (174) T 1yvr_A 3 TGKRFLLAIDVSASMNQRVLGS----------------ILNASVVAAAMCMLVA------RTEKDSHMVAFSDEMLPCPI 60 (174) T ss_dssp CCCCEEEEEECSGGGGSBSTTS----------------SCBHHHHHHHHHHHHH------HHCSSEEEEEESSSEECCSC T ss_pred CCCEEEEEEECCCCCCCCCCCC----------------CCCHHHHHHHHHHHHH------HHCCCCEEEEECCCEEECCC T ss_conf 7861799997755542850077----------------7369999999999987------42599779997696587899 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC- Q ss_conf 5778488999999864046788765388999999861310123345543347767787766624899606867777765- Q gi|254781110|r 269 PSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN- 347 (420) Q Consensus 269 lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~- 347 (420) ++.+.-... +..+ ...+.|+|++..+|.++.+.+.. ++.+|++|||+.+..... T Consensus 61 ~~~~~~~~~--~~~l-~~~~~g~T~~~~al~~a~~~~~~----------------------~~~ii~iTDG~~~~~~~~~ 115 (174) T 1yvr_A 61 TVNMLLHEV--VEKM-SDITMGSTDCALPMLWAQKTNTA----------------------ADIFIVFTDCETNVEDVHP 115 (174) T ss_dssp CTTSCHHHH--HHHH-TTCCCSCCCTTHHHHHHHHTTCC----------------------CSEEEEEECCCCCSSSCCH T ss_pred CCCCHHHHH--HHHH-HCCCCCCCHHHHHHHHHHHCCCC----------------------CCEEEEECCCCCCCCCCCH T ss_conf 865409999--9998-53678983599999999962656----------------------8889997179867898899 Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 348999999997898799999548977 Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPN 374 (420) Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~ 374 (420) ......++.++..+|.+|+||++.+.. T Consensus 116 ~~~~~~~~~~~~~~v~~~~vg~g~~~~ 142 (174) T 1yvr_A 116 ATALKQYREKMGIPAKLIVCAMTSNGF 142 (174) T ss_dssp HHHHHHHHHHHTCCCEEEEEECSSSSE T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 999999999848997499997668887 No 21 >>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* (B:110-351) Probab=99.02 E-value=1.5e-10 Score=86.74 Aligned_cols=187 Identities=13% Similarity=0.090 Sum_probs=109.1 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCC---- Q ss_conf 4320122102232422335787666675346766530678899989999851046787655430223204876431---- Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEK---- 265 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 265 (420) +.++.|++|.||||. .+++.+++++..+++.+.... ...|++++.|.+.... T Consensus 2 PiDivfviD~SgSM~---------------------~~i~~~K~~i~~~~~~~~~~~---~~~r~~~v~f~d~~~~~~~~ 57 (242) T 2vdr_B 2 PVDIYYLMDLSYSMK---------------------DDLWSIQNLGTKLATQMRKLT---SNLRIGFGAFVDKPVSPYMY 57 (242) T ss_dssp CEEEEEEEECSGGGG---------------------GGHHHHHHHHHHHHHHHHHHC---TTEEEEEEEECCCSSTTTSC T ss_pred CCCEEEEEECCCCHH---------------------HHHHHHHHHHHHHHHHHHHHC---CCCEEEEEEEEECCCCCCCC T ss_conf 866799994686879---------------------999999999999999998528---67369776502024565223 Q ss_pred --------------------------CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf --------------------------244577848899999986404678876538899999986131012334554334 Q gi|254781110|r 266 --------------------------NIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFR 319 (420) Q Consensus 266 --------------------------~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~ 319 (420) ..+++.+...+++.++.+ .+.|||+..+++.+|...+...... T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~i~~~---~~~gGtd~~e~~~~a~~~~~~~~~~-------- 126 (242) T 2vdr_B 58 ISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQ---SVSRNRDAPEGGFDAIMQATVCDEK-------- 126 (242) T ss_dssp CCSTHHHHCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTC---CCCCCSBSSBCHHHHHHHHHHCHHH-------- T ss_pred CCCHHHHCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHE---ECCCCCCCCCCHHHHHHHHHHHHCC-------- T ss_conf 46665505866566665667633010266778899999998622---1537898773399999999861101-------- Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCHHH-----HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC Q ss_conf 77677877666248996068677777653489-----9999999789879999954897789999986218982798179 Q gi|254781110|r 320 QGVKIPSLPFQKFIIFLTDGENNNFKSNVNTI-----KICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVN 394 (420) Q Consensus 320 ~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~~-----~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~ 394 (420) ...+++.+|++||+|||..+......... .........++.+++++++.+.....+-+.+....+.++.+.+ T Consensus 127 ---~~~r~~~~k~iilitD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (242) T 2vdr_B 127 ---IGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTE 203 (242) T ss_dssp ---HTCCTTSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEEEEEEG T ss_pred ---CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECH T ss_conf ---67787966999998868744356765333314788750326788645445477889999999998629379999457 Q ss_pred HHHHHHHHHHHHHHHHCCEEEE Q ss_conf 8999999999998742025587 Q gi|254781110|r 395 ADSLIHVFQNISQLMVHRKYSV 416 (420) Q Consensus 395 ~~~L~~aF~~Ia~~I~~lr~s~ 416 (420) +..+.|+.+++.+...+..+ T Consensus 204 --~~~~~~~~l~~~~~~~~~~~ 223 (242) T 2vdr_B 204 --NVVNLYQNYSELIPGTTVGV 223 (242) T ss_dssp --GGHHHHHHHHTTSTTCEEEE T ss_pred --HHHHHHHHHHHHCCCCEEEE T ss_conf --88889999987567654433 No 22 >>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans} (A:53-64,A:359-535) Probab=98.99 E-value=1.4e-08 Score=74.04 Aligned_cols=143 Identities=14% Similarity=0.051 Sum_probs=101.2 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312 Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420) Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420) .+...++.+++|.|+||...... ..|....+.....+..... ....+++++.|++..... T Consensus 13 ~~~~~~iv~vlD~SgSM~~~~~~---------------~~k~~~~~~~a~~~~~~~~-----~~~~~v~li~F~~~~~~~ 72 (189) T 2nvo_A 13 QPANTRHLLALDVSGSMTCGDVA---------------GVPGLTPNMAAAAMSLIAL-----RTEPDALTMGFAEQFRPL 72 (189) T ss_dssp CCCCSEEEEEECCSGGGGSCCGG---------------GCTTCCHHHHHHHHHHHHH-----HHSSEEEEEEEBSSEEEC T ss_pred CCCCCCEEEEEECHHHCCCCCCC---------------CCCHHHHHHHHHHHHHHHH-----CCCCCCEEEEECCCCEEC T ss_conf 88787179999773420464005---------------8731879999999999980-----758981799878951775 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC Q ss_conf 44577848899999986404678876538899999986131012334554334776778776662489960686777776 Q gi|254781110|r 267 IEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKS 346 (420) Q Consensus 267 ~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~ 346 (420) .+++.+.... ........+.|+|+...++..+.+.+.. ++.++++|||+.+.... T Consensus 73 ~~~~~~~~~~---~~~~~~~~~~g~T~~~~al~~a~~~~~~----------------------~~~vilitDg~~~~~~~ 127 (189) T 2nvo_A 73 GITPRDTLES---AMQKAQSVSFGGTDCAQPILWAAQERLD----------------------VDTFVVYTDNETWAGQV 127 (189) T ss_dssp CCCTTCCHHH---HHHHTCCSSBCCCCTTHHHHHHHHTTCC----------------------CSEEEEEESSCCCCCSS T ss_pred CCCCCCHHHH---HHHHHHCCCCCCCHHHHHHHHHHHCCCC----------------------CCEEEEECCCCCCCCCC T ss_conf 8888732999---9999854578985699999999846455----------------------89899980799778999 Q ss_pred CC-HHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 53-48999999997898799999548977 Q gi|254781110|r 347 NV-NTIKICDKAKENFIKIVTISINASPN 374 (420) Q Consensus 347 ~~-~~~~~c~~~k~~gi~i~tIgf~~~~~ 374 (420) +. ......+.++..++++++|+++.+.. T Consensus 128 ~~~~~~~~~~~~~~~~i~i~~i~~~~~~~ 156 (189) T 2nvo_A 128 HPTVALDQYAQKMGRAPKLIVVGLTATEF 156 (189) T ss_dssp CHHHHHHHHHHHHSCCCEEEEEETTCSCC T ss_pred CHHHHHHHHHHHCCCCCEEEEEEECCCCC T ss_conf 99999999998528997599998038888 No 23 >>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} (A:) Probab=98.78 E-value=4.9e-09 Score=76.96 Aligned_cols=186 Identities=8% Similarity=0.086 Sum_probs=123.4 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC-CC Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312-44 Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN-IE 268 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 268 (420) +.++.|++|.||||. .+++.++.++..+++.+...+ ...++++..|++..... .+ T Consensus 3 pvDivfviD~SgSM~---------------------~~~~~~k~~~~~~i~~l~~~~---~~~~i~~~~~~~~~~~~~~~ 58 (212) T 2iue_A 3 SVDLYFLMGLSGSAQ---------------------GHLSNVQTLGSDLLKALNEIS---RSGRIGFGSIVNMTFQHILK 58 (212) T ss_dssp CEEEEEEEECCGGGT---------------------TTHHHHHHHHHHHHHHHHHHC---SCEEEEEEEESSSCEEEEEE T ss_pred CEEEEEEEECCCCHH---------------------HHHHHHHHHHHHHHHHHHHCC---CCCCCCEEEECCCCCCCCCC T ss_conf 568999997871317---------------------799999999999999987437---44320134404654323677 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC Q ss_conf 57784889999998640467887653889999998613101233455433477677877666248996068677777653 Q gi|254781110|r 269 PSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNV 348 (420) Q Consensus 269 lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~ 348 (420) .+.+...+...++.+. +.|+|+...++..+...+...... ......+|++|++|||..+...... T Consensus 59 ~~~~~~~~~~~i~~l~---~~ggt~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~iilltdg~~~~~~~~~ 123 (212) T 2iue_A 59 LTADSSQFQRELRKQL---VSGKLATPKGQLDAVVQVAICLGE------------IGWRNGTRFLVLVTDNDFHLAKDKT 123 (212) T ss_dssp EESCHHHHHHHHHTCC---CCCCSSSSBCHHHHHHHHHHCHHH------------HTCCSSEEEEEEECSSCBCCTTGGG T ss_pred CCCCHHHHHHHHHCCC---CCCCCCCCCCHHHHHHHHHHHHHH------------CCCCCCCEEEEEECCCCCCCCCCHH T ss_conf 6667999999874221---257898883199999999985675------------2898774699998788634455113 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCC----HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCEEEE Q ss_conf 48999999997898799999548977----899999862189827981798999999999998742025587 Q gi|254781110|r 349 NTIKICDKAKENFIKIVTISINASPN----GQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHRKYSV 416 (420) Q Consensus 349 ~~~~~c~~~k~~gi~i~tIgf~~~~~----~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia~~I~~lr~s~ 416 (420) .. .+...+..++.++.++++.... ....+......++.++.........+.++.|++.+...-+++ T Consensus 124 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 193 (212) T 2iue_A 124 LG--TRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVPSRMVKTYEKLTTFIPKLTIGE 193 (212) T ss_dssp GG--TCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEEHHHHHHHHHHHHHSTTCEEEE T ss_pred HH--HHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCEEEE T ss_conf 43--33034687168754644566665677589999999870982899956566899999999769857741 No 24 >>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* (B:109-352) Probab=98.53 E-value=1.6e-08 Score=73.56 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=74.8 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC----- Q ss_conf 432012210223242233578766667534676653067889998999985104678765543022320487643----- Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE----- 264 (420) Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 264 (420) +.++.|++|.++||. ..++.+++++..+++.+.... ...|++++.|.+... T Consensus 3 pvDivfviD~TgSM~---------------------~~i~~~k~~i~~i~~~~~~~~---~~~r~~iv~f~d~~~~~~~~ 58 (244) T 3fcs_B 3 PVDIYYLMDLSYSMK---------------------DDLWSIQNLGTKLATQMRKLT---SNLRIGFGAFVDKPVSPYMY 58 (244) T ss_dssp CEEEEEEEECSGGGH---------------------HHHHHTTTTTHHHHHHHHHHC---SCEEEEEEEECCCSSTTTSC T ss_pred CCCEEEEEECCCCHH---------------------HHHHHHHHHHHHHHHHHHHHC---CCCEEEEEEEEECCCCCCCC T ss_conf 843799984565078---------------------899999999999999998607---46268666644134577455 Q ss_pred -------------------------CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCCCCC Q ss_conf -------------------------1244577848899999986404678876538899999986131-01233455433 Q gi|254781110|r 265 -------------------------KNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTS-DKKRSFFTNFF 318 (420) Q Consensus 265 -------------------------~~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~-~~~~~~~~~~~ 318 (420) ...++|.+...+...++.+. +.|||...+++..|.+.... .+... T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~---~~GG~D~~E~~~~al~~a~~~~~~~~------ 129 (244) T 3fcs_B 59 ISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQS---VSRNRDAPEGGFDAIMQATVCDEKIG------ 129 (244) T ss_dssp CCSTTTTTCTTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCC---CCCCSSSSBCHHHHHHHHHHCHHHHT------ T ss_pred CCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHEE---CCCCCCCCCCHHHHHHHHHHCCCCCC------ T ss_conf 777676258886778776788231542126777899999876266---33787886510545555431302256------ Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCC Q ss_conf 477677877666248996068677777 Q gi|254781110|r 319 RQGVKIPSLPFQKFIIFLTDGENNNFK 345 (420) Q Consensus 319 ~~~~~~~~~~~~k~iil~TDG~~~~~~ 345 (420) .+++.+|++|++|||..+... T Consensus 130 ------~~~~~~k~iilitDa~~h~~~ 150 (244) T 3fcs_B 130 ------WRNDASHLLVFTTDAKTHIAL 150 (244) T ss_dssp ------CCSSSEEEEEEEESSCBCCTT T ss_pred ------CCCCCEEEEEEECCCCCCCCC T ss_conf ------567853999998467632156 No 25 >>3k6s_B Integrin beta-2; hetero dimer, cell receptor, adhesion molecule, calcium, cell adhesion, disulfide bond, glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* (B:102-342) Probab=98.41 E-value=1.6e-07 Score=67.17 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=58.1 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC Q ss_conf 2445778488999999864046788765388999999861310-123345543347767787766624899606867777 Q gi|254781110|r 266 NIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSD-KKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF 344 (420) Q Consensus 266 ~~~lt~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~ 344 (420) ..++|.+..++.+.++.+. +.|||+..+++..|....... |.. ..++..|++|++|||..+.. T Consensus 84 ~~~~t~~~~~~~~~i~~~~---a~GGgD~~E~~~~al~~a~~~~~~~-------------~~~~~~k~iilitDa~~h~~ 147 (241) T 3k6s_B 84 VLKLTNNSNQFQTEVGKQL---ISGNLDAPEGGLDAMMQVAACPEEI-------------GWRNVTRLLVFATDDGFHFA 147 (241) T ss_dssp EEEEESCSHHHHHHHHTSC---CCCCSSSSCCHHHHHHHHTTCHHHH-------------CCCSSCCEEEEECSSCCCCT T ss_pred ECCCCCCHHHHHHHHHHEE---CCCCCCCCCCCHHHHHHHHEECCCC-------------CCCCCEEEEEEECCCCCCCC T ss_conf 2467667899999986346---2158778762142433210002323-------------43254389999866873205 Q ss_pred CCC----------------------------CHHHHHHHHHHHCCCEEEEEEEC Q ss_conf 765----------------------------34899999999789879999954 Q gi|254781110|r 345 KSN----------------------------VNTIKICDKAKENFIKIVTISIN 370 (420) Q Consensus 345 ~~~----------------------------~~~~~~c~~~k~~gi~i~tIgf~ 370 (420) ... .......+.+..+++..+.+.-+ T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (241) T 3k6s_B 148 GDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTS 201 (241) T ss_dssp TGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECG T ss_pred CCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC T ss_conf 665202364278885375588445677577888899999998629469999644 No 26 >>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B (A:155-399) Probab=92.08 E-value=0.71 Score=23.81 Aligned_cols=158 Identities=9% Similarity=0.086 Sum_probs=98.3 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCC-----------------------------CCCCCCCHHHHHH Q ss_conf 78899989999851046787655430223204876431-----------------------------2445778488999 Q gi|254781110|r 228 MAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEK-----------------------------NIEPSWGTEKVRQ 278 (420) Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~lt~~~~~~~~ 278 (420) +..+.+++...++.+.. ..+.++++++|++.... ..++......+.. T Consensus 25 l~~~~~~i~~~l~~l~~----~~~~~igiitf~~~V~~y~~~~~~~~~~~~v~~d~~~~~~p~~~~~l~~~~~~~~~i~~ 100 (245) T 3eh1_A 25 LTILCQSLLENLDKLPG----DSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKD 100 (245) T ss_dssp HHHHHHHHHHHTTTSSC----CTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHH T ss_pred HHHHHHHHHHHHHHCCC----CCCEEEEEEEECCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHHH T ss_conf 99999999999862568----88608999997987999845898775337862486433567876578507998999999 Q ss_pred HHHHHHHCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC---------- Q ss_conf 9998640467---887653889999998613101233455433477677877666248996068677777---------- Q gi|254781110|r 279 YVTRDMDSLI---LKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK---------- 345 (420) Q Consensus 279 ~i~~~~~~~~---~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~---------- 345 (420) .++.+..... ..++..+.++..+...|.+.. -.++++++|-.|.+. T Consensus 101 ~L~~l~~~~~~~~~~~~c~g~Al~~a~~ll~~~g---------------------GkIi~f~~g~p~~G~G~l~~~~~~~ 159 (245) T 3eh1_A 101 LLNALPNMFTNTRETHSALGPALQAAFKLMSPTG---------------------GRVSVFQTQLPSLGAGLLQSREDPN 159 (245) T ss_dssp HHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTTC---------------------EEEEEEECSCCCSSTTCCCCCCCSC T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC---------------------CEEEEEECCCCCCCCCEEECCCCCC T ss_conf 9985344335877763109999999999888439---------------------8799994689977897233366755 Q ss_pred -------------CCCHHHHHHHHHHHCCCEEEEEEECCCCCH-HHHHHHHHCCCCCEEEECC------HHHHHHHHHHH Q ss_conf -------------653489999999978987999995489778-9999986218982798179------89999999999 Q gi|254781110|r 346 -------------SNVNTIKICDKAKENFIKIVTISINASPNG-QRLLKTCVSSPEYHYNVVN------ADSLIHVFQNI 405 (420) Q Consensus 346 -------------~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~-~~~l~~cas~~~~yf~a~~------~~~L~~aF~~I 405 (420) ...--+.++..+..+||.|....++...-. ..+-.-|--++|..|..++ ..++...++++ T Consensus 160 ~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~~~~~~dl~tl~~l~~~TgG~i~~y~~f~~~~~~~~~~~l~~dl 239 (245) T 3eh1_A 160 QRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDL 239 (245) T ss_dssp GGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH T ss_conf 56863466543247799999999999759669999954876784989989985784599806755212657899999999 Q ss_pred HHHHH Q ss_conf 98742 Q gi|254781110|r 406 SQLMV 410 (420) Q Consensus 406 a~~I~ 410 (420) .+.++ T Consensus 240 ~~~l~ 244 (245) T 3eh1_A 240 KRYLT 244 (245) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99865 No 27 >>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} (A:118-235) Probab=90.75 E-value=0.97 Score=22.94 Aligned_cols=87 Identities=8% Similarity=0.081 Sum_probs=68.9 Q ss_pred CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH Q ss_conf 76662489960686777776534899999999789879999954897789999986218982798179899999999999 Q gi|254781110|r 327 LPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNIS 406 (420) Q Consensus 327 ~~~~k~iil~TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia 406 (420) ++.+|+-++.+-++.++.. ..+.+-+.++..|+++....+....+-...++..+...+-.|-..+. -+.++++.|. T Consensus 14 P~~k~vgvly~~~e~~s~~---~~~~l~~~a~~~Gi~l~~~~v~~~~di~~~~~~~~~~~dai~~~~d~-~v~s~~~~i~ 89 (118) T 3lft_A 14 PNVKTIGALYSSSEDNSKT---QVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVXTSKVDAIWVPIDN-TIASGFPTVV 89 (118) T ss_dssp TTCCEEEEEEETTCHHHHH---HHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHTTTCSEEEECSCH-HHHHTHHHHH T ss_pred CCCCEEEEECCCCCHHHHH---HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCH-HHHHHHHHHH T ss_conf 7886468966975312999---99999986664175687504666799999998367886199973870-6888999999 Q ss_pred HHHHCCEEEEE Q ss_conf 87420255877 Q gi|254781110|r 407 QLMVHRKYSVI 417 (420) Q Consensus 407 ~~I~~lr~s~~ 417 (420) +.....|+=++ T Consensus 90 ~~a~~~~iPv~ 100 (118) T 3lft_A 90 SSNQSSKKPIY 100 (118) T ss_dssp HHTTTTCCCEE T ss_pred HHHCCCCCCEE T ss_conf 85202478678 No 28 >>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B (B:171-421) Probab=85.00 E-value=2.2 Score=20.62 Aligned_cols=149 Identities=9% Similarity=0.009 Sum_probs=90.9 Q ss_pred HHHHHHHHHHHHHHCCCC-CCCCCCCCEEEECCCCCCCCC-----------------------------CCCCCCHHHHH Q ss_conf 788999899998510467-876554302232048764312-----------------------------44577848899 Q gi|254781110|r 228 MAALKNALLLFLDSIDLL-SHVKEDVYMGLIGYTTRVEKN-----------------------------IEPSWGTEKVR 277 (420) Q Consensus 228 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------------~~lt~~~~~~~ 277 (420) ...+.+++...++.+... ...+.+.++|+++|++..... .++......+. T Consensus 26 l~~~~~~i~~~l~~l~~~~~~~~~~~~igiItf~~~v~~y~~~~~~~~~~~~~~~d~~~~~~p~~~~~l~~~~e~~~~i~ 105 (251) T 3efo_B 26 VKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIH 105 (251) T ss_dssp HHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTSCCCCCSSSSSBCTTTTHHHHH T ss_pred HHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEEEEHHHHHHHHH T ss_conf 99999999999985512230468760699999588489951688766540340268532466674456534799899999 Q ss_pred HHHHHHHHC---CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC--------- Q ss_conf 999986404---67887653889999998613101233455433477677877666248996068677777--------- Q gi|254781110|r 278 QYVTRDMDS---LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK--------- 345 (420) Q Consensus 278 ~~i~~~~~~---~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~--------- 345 (420) ..++.+... ....+++.+.++..+...|..... .-.++++++|.++.+. T Consensus 106 ~ll~~l~~~~~~~~~~~~~~G~Al~~a~~ll~~~~~-------------------gG~Ii~f~sg~P~~G~g~~~~~~~~ 166 (251) T 3efo_B 106 NLLDQIPDMFADSNENETVFAPVIQAGMEALKAADC-------------------PGKLFIFHSSLPTAEAPGKLKNRDD 166 (251) T ss_dssp HHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTC-------------------CEEEEEEECSCCCSSSTTCCCCCCC T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC-------------------CCEEEEEECCCCCCCCCCCCCCCCC T ss_conf 999843564167888764379999999999724589-------------------9608999747998789854456553 Q ss_pred ---------------CCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHH-HHCCCCCEEEECCH Q ss_conf ---------------653489999999978987999995489778999998-62189827981798 Q gi|254781110|r 346 ---------------SNVNTIKICDKAKENFIKIVTISINASPNGQRLLKT-CVSSPEYHYNVVNA 395 (420) Q Consensus 346 ---------------~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~-cas~~~~yf~a~~~ 395 (420) ....-..++..+.+.||.+....++.+.-.-..|.. |.-++|+.|.-++- T Consensus 167 ~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~~~~~~~l~~l~~l~~~TgG~i~~y~~f 232 (251) T 3efo_B 167 KKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNF 232 (251) T ss_dssp CCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTC T ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCC T ss_conf 334676044542151068999999999975956999973487667799999998659679995898 No 29 >>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} (B:298-550) Probab=81.79 E-value=2.9 Score=19.79 Aligned_cols=157 Identities=11% Similarity=0.083 Sum_probs=89.2 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC----------------------------CC--------CCC Q ss_conf 788999899998510467876554302232048764312----------------------------44--------577 Q gi|254781110|r 228 MAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN----------------------------IE--------PSW 271 (420) Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~--------lt~ 271 (420) +..+.+++. ..+...+....+.++++++|++..... .| +.. T Consensus 25 l~~~~~~i~---~~l~~l~~~~~~~~vglItf~~~v~~y~~~~~~~~~~~~~~~~~~~~~~dl~~~~~p~~~~~l~~~~~ 101 (253) T 1m2v_B 25 LATTINTLL---QNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKA 101 (253) T ss_dssp HHHHHHHHH---HTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTT T ss_pred HHHHHHHHH---HHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEHHH T ss_conf 999999999---99861425787756999997871899955667776433245653034433444246786664431699 Q ss_pred CHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC-- Q ss_conf 8488999999864046---78876538899999986131012334554334776778776662489960686777776-- Q gi|254781110|r 272 GTEKVRQYVTRDMDSL---ILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKS-- 346 (420) Q Consensus 272 ~~~~~~~~i~~~~~~~---~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~-- 346 (420) ....+...++++.... ...++..+.++..+...|.+.. -.+++.++|..|.+.. T Consensus 102 ~~~~i~~ll~~l~~~~~~~~~~~~~~G~Al~~a~~ll~~~g---------------------G~Ii~f~~g~p~~G~G~l 160 (253) T 1m2v_B 102 CRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG---------------------GKIIVVSGTLPNLGIGKL 160 (253) T ss_dssp THHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTTC---------------------EEEEEEESSCCCSSTTCC T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC---------------------CEEEEEECCCCCCCCCCC T ss_conf 89999999986166416888872139999999999876279---------------------749999567986788622 Q ss_pred ----------------------CCHHHHHHHHHHHCCCEEEEEEECCCCCH-HHHHHHHHCCCCCEEEECC--HH---HH Q ss_conf ----------------------53489999999978987999995489778-9999986218982798179--89---99 Q gi|254781110|r 347 ----------------------NVNTIKICDKAKENFIKIVTISINASPNG-QRLLKTCVSSPEYHYNVVN--AD---SL 398 (420) Q Consensus 347 ----------------------~~~~~~~c~~~k~~gi~i~tIgf~~~~~~-~~~l~~cas~~~~yf~a~~--~~---~L 398 (420) ..--..++..+...||-|....++.+.-. ..+-.-|..++|..|..++ .+ +. T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~fY~~l~~~~~~~~isvdif~~~~~~~~l~~l~~l~~~TgG~i~~y~~f~~~~~~d~ 240 (253) T 1m2v_B 161 QRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDI 240 (253) T ss_dssp CCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHH T ss_pred CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCHHHH T ss_conf 23665433457413454146137999999999998691799998048777708777776516846998078753314578 Q ss_pred HHHHHHHHHH Q ss_conf 9999999987 Q gi|254781110|r 399 IHVFQNISQL 408 (420) Q Consensus 399 ~~aF~~Ia~~ 408 (420) .+-++++.+. T Consensus 241 ~~l~~dl~~~ 250 (253) T 1m2v_B 241 VKFSTEFAKH 250 (253) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999986 No 30 >>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A (A:129-398) Probab=80.06 E-value=3.4 Score=19.42 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=56.5 Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC----------------------- Q ss_conf 765388999999861310123345543347767787766624899606867777765----------------------- Q gi|254781110|r 291 PTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN----------------------- 347 (420) Q Consensus 291 ~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~----------------------- 347 (420) ....+.++.-+...|..... +..-.|++++.|-.|.+... T Consensus 137 ~~~~G~Al~~A~~ll~~~~~-----------------~~gG~I~~f~sg~pt~G~G~l~~~~~~~~~~~~~d~~~~~~~~ 199 (270) T 2nut_A 137 LRSSGVALSIAVGLLECTFP-----------------NTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKY 199 (270) T ss_dssp CCCHHHHHHHHHHHHHHHSC-----------------SSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTT T ss_pred CCCCHHHHHHHHHHHHHHCC-----------------CCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH T ss_conf 66625899999999987525-----------------7886799994789977985002344454446645520012331 Q ss_pred -----CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH-HHHCCCCCEEEECC--HHHHHHHHH Q ss_conf -----348999999997898799999548977899999-86218982798179--899999999 Q gi|254781110|r 348 -----VNTIKICDKAKENFIKIVTISINASPNGQRLLK-TCVSSPEYHYNVVN--ADSLIHVFQ 403 (420) Q Consensus 348 -----~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~-~cas~~~~yf~a~~--~~~L~~aF~ 403 (420) ..-..++..+.+.||.|....+..+.-.-..|. -|..++|..|..++ .+.+.+-|. T Consensus 200 ~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TgG~i~~y~~f~~~~~~~~l~ 263 (270) T 2nut_A 200 VKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQ 263 (270) T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHH T ss_conf 3606799999999998779479999726644684543205650884799937986143199999 No 31 >>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: LLP; 2.50A {Thermotoga maritima} (A:1-54,A:291-409) Probab=58.38 E-value=9.9 Score=16.35 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 4899999999789879999954897 Q gi|254781110|r 349 NTIKICDKAKENFIKIVTISINASP 373 (420) Q Consensus 349 ~~~~~c~~~k~~gi~i~tIgf~~~~ 373 (420) .+.-.++.+|++|++||-.-+|-|+ T Consensus 30 ~~~~~~~~a~~~g~~~~~l~ig~pd 54 (173) T 2gb3_A 30 KLVPFAEXAKKRGVRIHHLNIGQPD 54 (173) T ss_dssp GGHHHHHHHHHTTCEEEECSSCCCC T ss_pred HHHHHHHHHHHCCCCEEECCCCCCC T ss_conf 9999999999769988989898899 No 32 >>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} (A:167-400) Probab=58.21 E-value=10 Score=16.33 Aligned_cols=148 Identities=7% Similarity=0.005 Sum_probs=86.4 Q ss_pred HHHHHHHHHHHHHHCCCC-CCCCCCCCEEEECCCCCCCCC-----------------------------CCCCCCHHHHH Q ss_conf 788999899998510467-876554302232048764312-----------------------------44577848899 Q gi|254781110|r 228 MAALKNALLLFLDSIDLL-SHVKEDVYMGLIGYTTRVEKN-----------------------------IEPSWGTEKVR 277 (420) Q Consensus 228 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------------~~lt~~~~~~~ 277 (420) +..+.+++...++.+... .....+.++++++|++..... .++......+. T Consensus 26 l~~~~~~i~~~l~~~~~~~~~~~~~~~vgiItf~~~v~~y~~~~~~~~~~~~v~~d~~~~~~p~~~~~~~~~~e~~~~i~ 105 (234) T 3eh2_A 26 VRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGFLVNVNESRAVIT 105 (234) T ss_dssp HHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTTCCCCCCTTSSBCTTTTHHHHH T ss_pred HHHHHHHHHHHHHHCHHHCCCCCCCEEEEEEEECCEEEEEECCCCCHHHEEEECCCCCCCCCCCCCCEEECHHHHHHHHH T ss_conf 99999999999984610014567622799999799899833588730124773057311355664566543288899999 Q ss_pred HHHHHHHHCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-CC-------- Q ss_conf 99998640467---8876538899999986131012334554334776778776662489960686777-77-------- Q gi|254781110|r 278 QYVTRDMDSLI---LKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNN-FK-------- 345 (420) Q Consensus 278 ~~i~~~~~~~~---~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~-~~-------- 345 (420) ..++.+..... ...++.+.++.-+...|..... .-.|+++++|.++. +. T Consensus 106 ~lL~~l~~~~~~~~~~~~~~G~Al~~a~~ll~~~~~-------------------ggkIi~f~~~~P~t~G~G~l~~~~~ 166 (234) T 3eh2_A 106 SLLDQIPEMFADTRETETVFVPVIQAGMEALKAAEC-------------------AGKLFLFHTSLPIAEAPGKLKNRDD 166 (234) T ss_dssp HHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTC-------------------CEEEEEEECSCCCSSSTTCCCCCCC T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-------------------CCCEEEEECCCCCCCCCCCCCCCCC T ss_conf 998567655568867875369999999999712688-------------------9748999736887778864214555 Q ss_pred ---------------CCCHHHHHHHHHHHCCCEEEEEEECCCCC-HHHHHHHHHCCCCCEEEECC Q ss_conf ---------------65348999999997898799999548977-89999986218982798179 Q gi|254781110|r 346 ---------------SNVNTIKICDKAKENFIKIVTISINASPN-GQRLLKTCVSSPEYHYNVVN 394 (420) Q Consensus 346 ---------------~~~~~~~~c~~~k~~gi~i~tIgf~~~~~-~~~~l~~cas~~~~yf~a~~ 394 (420) ....-..++..+...||.|....++.+.- -..+-.-|.-++|+.|.-++ T Consensus 167 ~~~~~s~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~~~~~~~l~~l~~l~~~TGG~i~~y~~ 231 (234) T 3eh2_A 167 RKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYAS 231 (234) T ss_dssp GGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTT T ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECC T ss_conf 44468603444314237899999999998594599998448656739999999745957999578 No 33 >>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} (A:) Probab=57.17 E-value=7.9 Score=17.02 Aligned_cols=16 Identities=6% Similarity=-0.037 Sum_probs=8.1 Q ss_pred HHCCCEEEEEEECCCC Q ss_conf 9789879999954897 Q gi|254781110|r 358 KENFIKIVTISINASP 373 (420) Q Consensus 358 k~~gi~i~tIgf~~~~ 373 (420) --.+...+.|-||-+. T Consensus 100 ~i~~~~~~aiVFG~~~ 115 (157) T 1kjn_A 100 GILNTETLAIIFDRDA 115 (157) T ss_dssp HHHCSEEEEEEECSCH T ss_pred HHHCCCEEEEEECCCC T ss_conf 8727864899933764 No 34 >>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} (A:182-436) Probab=50.63 E-value=13 Score=15.55 Aligned_cols=158 Identities=12% Similarity=0.082 Sum_probs=88.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC------------------------------------CCCCC Q ss_conf 788999899998510467876554302232048764312------------------------------------44577 Q gi|254781110|r 228 MAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN------------------------------------IEPSW 271 (420) Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~lt~ 271 (420) +..+.+++...++. .+....+.++++++|++..... .++.. T Consensus 25 l~~~~~~i~~~l~~---l~~~~~~~~igiItf~~~V~~y~~~~~~~~~~~~~~~~~~~~~~di~~~~~p~~~~~l~~~~~ 101 (255) T 1pcx_A 25 LATTINTLLQNLDS---IPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKA 101 (255) T ss_dssp HHHHHHHHHHHTTT---SCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTT T ss_pred HHHHHHHHHHHHHH---CCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEHHH T ss_conf 99999999998751---436787605999995882899965677776433334443244444233146787665120689 Q ss_pred CHHHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC-- Q ss_conf 848899999986404---678876538899999986131012334554334776778776662489960686777776-- Q gi|254781110|r 272 GTEKVRQYVTRDMDS---LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKS-- 346 (420) Q Consensus 272 ~~~~~~~~i~~~~~~---~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~-- 346 (420) ....+...++.+... ....++..+.++..+...|.... -.+++.++|..|.+.. T Consensus 102 ~~~~i~~lL~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~~g---------------------GkI~~f~~g~pt~G~G~l 160 (255) T 1pcx_A 102 CRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG---------------------GKIIVVSGTLPNLGIGKL 160 (255) T ss_dssp THHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTC---------------------EEEEEEESSCCCSSTTCC T ss_pred HHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHCCC---------------------CEEEEEECCCCCCCCCCC T ss_conf 79999999985545316988873229999999999874579---------------------869999577986788632 Q ss_pred ----------------------CCHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHHHCCCCCEEEECC--H---HHH Q ss_conf ----------------------534899999999789879999954897-789999986218982798179--8---999 Q gi|254781110|r 347 ----------------------NVNTIKICDKAKENFIKIVTISINASP-NGQRLLKTCVSSPEYHYNVVN--A---DSL 398 (420) Q Consensus 347 ----------------------~~~~~~~c~~~k~~gi~i~tIgf~~~~-~~~~~l~~cas~~~~yf~a~~--~---~~L 398 (420) ...-+.++..+..+||-|....++... +-..+-.-|..++|+.|..++ . .+- T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~~~~~~dl~~l~~l~~~TgG~i~~y~~f~~~~~~d~ 240 (255) T 1pcx_A 161 QRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDI 240 (255) T ss_dssp CC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHH T ss_pred CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH T ss_conf 10455444577345565325378999999999998793599986047777728888888745846998068664434578 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999874 Q gi|254781110|r 399 IHVFQNISQLM 409 (420) Q Consensus 399 ~~aF~~Ia~~I 409 (420) .+-+++|.+.+ T Consensus 241 ~~l~~dl~~~l 251 (255) T 1pcx_A 241 VKFSTEFAKHI 251 (255) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999865 No 35 >>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} (A:134-264) Probab=44.93 E-value=16 Score=14.98 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=25.6 Q ss_pred HHHHCCCCC-EEEECCHHHHHHHHHHHHHHHHCCE Q ss_conf 986218982-7981798999999999998742025 Q gi|254781110|r 380 KTCVSSPEY-HYNVVNADSLIHVFQNISQLMVHRK 413 (420) Q Consensus 380 ~~cas~~~~-yf~a~~~~~L~~aF~~Ia~~I~~lr 413 (420) +.|.+++|. +|.....+++...++.|.+.+..++ T Consensus 91 Rrc~tGeG~f~f~t~~~~~i~~~~~~~~~~~~~~~ 125 (131) T 1qqg_A 91 RSAVTGPGEFWMQVDDSVVAQNMHETILEAMRAMS 125 (131) T ss_dssp TTSTTCSEEEEEECSCHHHHHHHHHHHHHHHHGGG T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH T ss_conf 53799983399982894799999999999999757 No 36 >>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold; HET: 1PE MES; 1.80A {Aquifex aeolicus VF5} PDB: 2p68_A* (A:) Probab=41.04 E-value=18 Score=14.60 Aligned_cols=56 Identities=4% Similarity=0.010 Sum_probs=29.3 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCH------HHHHHHHHC--CCCCEEEECCHHHHHHHHHHHHHH Q ss_conf 89999999978987999995489778------999998621--898279817989999999999987 Q gi|254781110|r 350 TIKICDKAKENFIKIVTISINASPNG------QRLLKTCVS--SPEYHYNVVNADSLIHVFQNISQL 408 (420) Q Consensus 350 ~~~~c~~~k~~gi~i~tIgf~~~~~~------~~~l~~cas--~~~~yf~a~~~~~L~~aF~~Ia~~ 408 (420) ...+....+..||++.+|.-+.-.+. ....+.... ..+. .-.++|+-++.--++.+ T Consensus 168 ~~~la~e~~~~gI~vn~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~r---~~~~eeva~~~~~L~s~ 231 (248) T 2pnf_A 168 TKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGR---FGSPEEVANVVLFLCSE 231 (248) T ss_dssp HHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSS---CBCHHHHHHHHHHHHSG T ss_pred HHHHHHHHCHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCC T ss_conf 99999985743828999962889772000059999999984699889---87999999999999583 No 37 >>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A (A:45-75,A:314-427) Probab=40.17 E-value=5.6 Score=17.96 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=45.2 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCEEE Q ss_conf 4899999999789879999954897789999986218982798179899999999999874202558 Q gi|254781110|r 349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHRKYS 415 (420) Q Consensus 349 ~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia~~I~~lr~s 415 (420) ....+|+.++.+||.+.++.+.........++.|.+ ..+ .-+.-+.+.+++++|.+++...... T Consensus 76 ~~~~l~~~L~~~GI~v~~~~~PavP~~~~~iRis~t-~~~--T~edId~li~aL~~i~~~l~~~~~~ 139 (145) T 2w8t_A 76 QAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSIC-AEH--TPAQIQTVLGMFQAAGRAVGVIGLE 139 (145) T ss_dssp HHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECC-TTC--CHHHHHHHHHHHHHHHHHHTCC--- T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEC-CCC--CHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 999999999838941877899988999706999847-558--9999999999999999984967422 No 38 >>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* (A:1-109,A:247-284) Probab=30.02 E-value=28 Score=13.47 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=53.2 Q ss_pred CCEEEEEECCC-CCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHH Q ss_conf 62489960686-77777653489999999978987999995489778999998621898279817989999999999987 Q gi|254781110|r 330 QKFIIFLTDGE-NNNFKSNVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQL 408 (420) Q Consensus 330 ~k~iil~TDG~-~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia~~ 408 (420) .|+.++...|. +..+......+.+-...|+.||++-.+--..+.+-...+++++..+-..--+.+ .++.+++.++|.+ T Consensus 5 ~kVa~v~~~g~~~D~sfn~s~~~G~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~a~~g~dlIi~~g-~~~~~~~~~vA~~ 83 (147) T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTDAEYVPSLSAFADENMGLVVACG-SFLVEAVIETSAR 83 (147) T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHTTCSEEEEES-TTTHHHHHHHHHH T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECC-CCCCCHHHHHHHH T ss_conf 589999878899987789999999999999859859999459989999999999977999899917-5434689999988 Q ss_pred HHCCEEEEE Q ss_conf 420255877 Q gi|254781110|r 409 MVHRKYSVI 417 (420) Q Consensus 409 I~~lr~s~~ 417 (420) =...++-++ T Consensus 84 yPd~~F~~i 92 (147) T 2fqx_A 84 FPKQKFLVI 92 (147) T ss_dssp CTTSCEEEE T ss_pred CCCCEEEEE T ss_conf 899879995 No 39 >>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, pyridoxal phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} (A:29-54,A:294-398) Probab=29.67 E-value=23 Score=14.01 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=39.6 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHH---HHHHHHHHHHHCC Q ss_conf 489999999978987999995489778999998621898279817989999---9999999874202 Q gi|254781110|r 349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLI---HVFQNISQLMVHR 412 (420) Q Consensus 349 ~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~---~aF~~Ia~~I~~l 412 (420) ....+++.+.++||-+..+.+..-+.++..++.|.+ ..| +.++|. +++..|.+++.-. T Consensus 68 ~~~~l~~~L~e~Gi~V~~~~~P~vP~g~~~lRisit-a~~-----t~eeId~lieal~ei~~~~gl~ 128 (131) T 3a2b_A 68 KTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLM-ATH-----TYDQIDEAIEKMVKVFKQAEVE 128 (131) T ss_dssp HHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECC-TTC-----CHHHHHHHHHHHHHHHHHCC-- T ss_pred HHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEC-CCC-----CHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999999978927988889988999806999988-779-----9999999999999999983974 No 40 >>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* (A:217-375) Probab=29.06 E-value=29 Score=13.36 Aligned_cols=79 Identities=6% Similarity=-0.102 Sum_probs=42.2 Q ss_pred CCCCCHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCCCCCCCCHHHHHHHHHHHCCCEEEE Q ss_conf 8876538899999986131-012334554334776778776662489960-68677777653489999999978987999 Q gi|254781110|r 289 LKPTDSTPAMKQAYQILTS-DKKRSFFTNFFRQGVKIPSLPFQKFIIFLT-DGENNNFKSNVNTIKICDKAKENFIKIVT 366 (420) Q Consensus 289 ~g~T~~~~gl~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~k~iil~T-DG~~~~~~~~~~~~~~c~~~k~~gi~i~t 366 (420) +.|.+...+..-+++...- +.+..........+.....-+...++|+++ .|+. ......+.+.+|++|+++.+ T Consensus 22 G~G~s~~~A~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~~g~t-----~e~~~~~~~~~k~~g~~vi~ 96 (159) T 2zj3_A 22 GRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHT-----YAKCQNALQQVVARQGRPVV 96 (159) T ss_dssp ECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEEECSSTT-----HHHHHHHHHHHHHTTCCCEE T ss_pred CCCCCHHHHHHHHHHHHHHHCEEEEEECHHHHHCCCHHHCCCCCCEEEEECCCHH-----HHHHHHHHHHHHHCCCCEEE T ss_conf 6874378999999999886351347722576407526650799718999757314-----78899999999977996899 Q ss_pred EEECCC Q ss_conf 995489 Q gi|254781110|r 367 ISINAS 372 (420) Q Consensus 367 Igf~~~ 372 (420) |.=..+ T Consensus 97 it~~~~ 102 (159) T 2zj3_A 97 ICDKED 102 (159) T ss_dssp EEETTC T ss_pred EECCCC T ss_conf 987872 No 41 >>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* (A:147-389) Probab=27.79 E-value=30 Score=13.25 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=29.5 Q ss_pred CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 77666248996068677777653489999999978987999995489 Q gi|254781110|r 326 SLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINAS 372 (420) Q Consensus 326 ~~~~~k~iil~TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~ 372 (420) ....+++.|+.+||.+-. ....+++.+|++|..+--|.||.+ T Consensus 196 ~~~~~~~~Ii~Sdgld~~-----ki~~i~~~~~~~g~~~d~~~fGvG 237 (243) T 3dhf_A 196 KLLPPYLRVIQGDGVDIN-----TLQEIVEGMKQKMWSIENIAFGSG 237 (243) T ss_dssp EECCTTEEEEECSSCSHH-----HHHHHHHHHHHTTBCGGGEEEEES T ss_pred CCCCCCCEEEECCCCCHH-----HHHHHHHHHHHCCCCCCCCEEECC T ss_conf 246653159955898999-----999999999866987775222014 No 42 >>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus} (A:) Probab=27.65 E-value=30 Score=13.20 Aligned_cols=22 Identities=27% Similarity=0.307 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHCCCCCHHH Q ss_conf 7899999999886303885699 Q gi|254781110|r 3 LLSRFRFYFKKGIASEKANFSI 24 (420) Q Consensus 3 ~~~~~~~~~~~~~~~~~G~vai 24 (420) -+.|||+-++++++.-+-.+-+ T Consensus 2 rfkrfrkkfkklfkklspvipl 23 (27) T 2ket_A 2 RFKRFRKKFKKLFKKLSPVIPL 23 (27) T ss_dssp CHHHHHHHHHHHHHHHSCSCHH T ss_pred CHHHHHHHHHHHHHHCCCCCCH T ss_conf 3789999999999863753201 No 43 >>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: PLP; 2.33A {Pyrococcus furiosus dsm 3638} (A:1-50,A:300-406) Probab=25.42 E-value=33 Score=12.94 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=17.4 Q ss_pred ECCHHHHHHHHHHHHHHHHCCE Q ss_conf 1798999999999998742025 Q gi|254781110|r 392 VVNADSLIHVFQNISQLMVHRK 413 (420) Q Consensus 392 a~~~~~L~~aF~~Ia~~I~~lr 413 (420) +.+.++|.++++.|++-+.+++ T Consensus 134 ~~~~e~l~~a~~rL~~~l~~~~ 155 (157) T 1xi9_A 134 LPPIEILEEAMDRFEKFMKERL 155 (157) T ss_dssp CSCHHHHHHHHHHHHHHHHHC- T ss_pred CCCHHHHHHHHHHHHHHHHHHH T ss_conf 3899999999999999999985 No 44 >>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} (A:118-392) Probab=22.04 E-value=38 Score=12.52 Aligned_cols=96 Identities=13% Similarity=0.017 Sum_probs=54.4 Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC---------------------- Q ss_conf 8765388999999861310123345543347767787766624899606867777765---------------------- Q gi|254781110|r 290 KPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN---------------------- 347 (420) Q Consensus 290 g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~---------------------- 347 (420) ..+..+.++.-|...+..... +..-.+++++.|-.|.+... T Consensus 141 ~~~~~G~Al~~A~~ll~~~~~-----------------~~gGkI~~f~sg~pt~G~G~i~~~~~~~~~~~~~d~~~~~~~ 203 (275) T 1m2o_A 141 PLRATGSALNIASLLLQGCYK-----------------NIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQ 203 (275) T ss_dssp CCCCHHHHHHHHHHHHHHHCT-----------------TSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCT T ss_pred CCCCHHHHHHHHHHHHHHHCC-----------------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 776448899999999987406-----------------788789999479998788533243434445664554310133 Q ss_pred ------CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH-CCCCCEEEECC--HHHHHHHH Q ss_conf ------348999999997898799999548977899999862-18982798179--89999999 Q gi|254781110|r 348 ------VNTIKICDKAKENFIKIVTISINASPNGQRLLKTCV-SSPEYHYNVVN--ADSLIHVF 402 (420) Q Consensus 348 ------~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~ca-s~~~~yf~a~~--~~~L~~aF 402 (420) ..-..++..+.+.||.|-...++.+.-.-..|+.++ .++|..|..++ .+.+.+-| T Consensus 204 ~~~~a~~fY~~la~~~~~~~isvDiF~~s~~~v~l~tl~~l~~~TgG~i~~y~~f~~~~~~~~l 267 (275) T 1m2o_A 204 HYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSY 267 (275) T ss_dssp THHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHH T ss_conf 1461579999999999877968999970587768198888887378129976888602306899 No 45 >>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} (A:362-547) Probab=20.28 E-value=42 Score=12.29 Aligned_cols=82 Identities=9% Similarity=0.067 Sum_probs=48.7 Q ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC--------------------CCHHHHHHHHHCCCCCE Q ss_conf 6248996068677777653489999999978987999995489--------------------77899999862189827 Q gi|254781110|r 330 QKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINAS--------------------PNGQRLLKTCVSSPEYH 389 (420) Q Consensus 330 ~k~iil~TDG~~~~~~~~~~~~~~c~~~k~~gi~i~tIgf~~~--------------------~~~~~~l~~cas~~~~y 389 (420) ++++.+.-||...... ..+. .+...+..+-+|=+..+ ....++.+.+.+-+-.| T Consensus 71 ~~vi~i~GDGs~~~~~-----~~l~-~~~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~ 144 (186) T 1v5e_A 71 RQVWNIIGDGAFSMTY-----PDVV-TNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKG 144 (186) T ss_dssp SCEEEEEEHHHHHHHG-----GGHH-HHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHHHHHHHTTSEE T ss_pred CEEEEEECCCCHHHCC-----HHHH-HHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEE T ss_conf 8046553661043052-----7699-999837982899998781265658788608986768799999999999789879 Q ss_pred EEECCHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 9817989999999999987420255877 Q gi|254781110|r 390 YNVVNADSLIHVFQNISQLMVHRKYSVI 417 (420) Q Consensus 390 f~a~~~~~L~~aF~~Ia~~I~~lr~s~~ 417 (420) +.+.+.+||.++++..-+...+-+.+|+ T Consensus 145 ~~v~~~~el~~a~~~a~~~~~~~gp~lI 172 (186) T 1v5e_A 145 FTVSRIEDMDRVMAEAVAANKAGHTVVI 172 (186) T ss_dssp EEECBHHHHHHHHHHHHHHHHTTCCEEE T ss_pred EEECCHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 9989999999999999953999984999 Done!