HHsearch results for GI: 254781110 and protein with PDBid: 1mf7_A

>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=99.49  E-value=1.8e-13  Score=104.76  Aligned_cols=180  Identities=16%  Similarity=0.171  Sum_probs=129.3

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|++|.                    ...+...+..+..++..+.     ....|++++.|++......+|
T Consensus         5 ~~DivfvlD~S~s~~--------------------~~~f~~~k~~i~~~i~~l~-----~~~~rvgvv~f~~~~~~~~~l   59 (194)
T 1mf7_A            5 DSDIAFLIDGSGSII--------------------PHDFRRMKEFVSTVMEQLK-----KSKTLFSLMQYSEEFRIHFTF   59 (194)
T ss_dssp             CEEEEEEEECCTTSC--------------------HHHHHHHHHHHHHHHHHHC-----CTTEEEEEEEESSSEEEEECH
T ss_pred             CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHCC-----CCCCEEEEEEEEEEEEEEECC
T ss_conf             717999995989988--------------------7999999999999999719-----888089999965403775114


Q ss_pred             CCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             778--488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  270 SWG--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       270 t~~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      +..  ...+.+.++.+.  ..+|+|+...++.++.+.+.....             ...+..+|++|++|||..+.... 
T Consensus        60 ~~~~~~~~~~~~i~~l~--~~~g~t~~~~al~~a~~~~~~~~~-------------~~~~~~~kvvvl~tDG~~~~~~~-  123 (194)
T 1mf7_A           60 KEFQNNPNPRSLVKPIT--QLLGRTHTATGIRKVVRELFNITN-------------GARKNAFKILVVITDGEKFGDPL-  123 (194)
T ss_dssp             HHHHHSCCHHHHHTTCC--CCCSCBCHHHHHHHHHHTTTSGGG-------------TCCTTSEEEEEEEESSCCBSCSS-
T ss_pred             CCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHC-------------CCCCCCCEEEEEEECCCCCCCHH-
T ss_conf             66366899998764134--236986699999999998741432-------------67677664999994788789804-


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf             348999999997898799999548977---899999862189--8279817989999999999987420
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPN---GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVH  411 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~---~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~  411 (420)
                       .+......+|..||+||+||++....   ....|+.+|+.|  .++|.+++.++|.+.++.|.+.|-.
T Consensus       124 -~~~~~~~~l~~~gv~v~~Vgi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~~  191 (194)
T 1mf7_A          124 -GYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC  191 (194)
T ss_dssp             -CGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             -49999999997799999999788766634699999986699866089949999999999999876414