HHsearch results for GI: 254781110 and protein with PDBid: 2b2x_A
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.55 E-value=1.2e-13 Score=105.95 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=133.8
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420)
Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420)
..|+.|++|.|++|. .++..+..+..+++.+. ..++..|++++.|++......+|
T Consensus 22 ~~DivfvlD~S~sv~----------------------~~~~~k~fv~~li~~~~---i~~~~~rv~lv~fs~~~~~~~~l 76 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIY----------------------PWESVIAFLNDLLKRMD---IGPKQTQVGIVQYGENVTHEFNL 76 (223)
T ss_dssp CEEEEEEEECSTTCC----------------------CHHHHHHHHHHHHTTSC---CSTTSCCEEEEEESSSEEEEECT
T ss_pred CEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHCC---CCCCCCEEEEEEEECCEEEECCC
T ss_conf 656999997988743----------------------69999999999999715---58886089899860426786054
Q ss_pred CCCH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 7784--88999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r 270 SWGT--EKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420)
Q Consensus 270 t~~~--~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420)
+... ..+...++.+.. ..+++|+...+|.++.+.+.....+ .+++.+|++|++|||..+. +
T Consensus 77 ~~~~~~~~~~~~i~~i~~-~~~~~t~~~~aL~~~~~~~~~~~~g-------------~R~~~~kvlillTDG~~~d---~ 139 (223)
T 2b2x_A 77 NKYSSTEEVLVAANKIVQ-RGGRQTMTALGIDTARKEAFTEARG-------------ARRGVKKVMVIVTDGESHD---N 139 (223)
T ss_dssp TTCCSHHHHHHHHTTCCC-CCCSSCCHHHHHHHHHHTTSSGGGT-------------CCTTSEEEEEEEESSCCTT---G
T ss_pred CCCCCHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCCC-------------CCCCCCEEEEEEECCCCCC---C
T ss_conf 555768999999874312-4773322177788888875033358-------------8878725799982698788---3
Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCCHH--------HHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCCEE
Q ss_conf 34899999999789879999954897789--------9999862189--8279817989999999999987420255
Q gi|254781110|r 348 VNTIKICDKAKENFIKIVTISINASPNGQ--------RLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHRKY 414 (420)
Q Consensus 348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~~~--------~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~lr~ 414 (420)
.........+|+.||+||+||+|.+.+.. ..|+..||.| .|+|.+++.++|.++++.|.+.|-.+..
T Consensus 140 ~~~~~~a~~lk~~gi~v~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~~~f~~~d~~~L~~i~~~l~~~ic~~e~ 216 (223)
T 2b2x_A 140 YRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFALEA 216 (223)
T ss_dssp GGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC----
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 12999999998759989999984666644324423699999986699855189818999999999999988643103