HHSEARCH alignment of GI: 254781110 and SCOP domain: d1mjna_

Alignment
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.32  E-value=4.3e-12  Score=94.29  Aligned_cols=171  Identities=13%  Similarity=0.114  Sum_probs=121.5

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|+||.                    ...+...+..+..+++.+.     .+..|++++.|++......+|
T Consensus         2 ~~DivfllD~S~Si~--------------------~~~f~~~k~f~~~~i~~i~-----~~~~rvgvv~fs~~~~~~~~l   56 (179)
T d1mjna_           2 NVDLVFLFDGSMSLQ--------------------PDEFQKILDFMKDVMKKCS-----NTSYQFAAVQFSTSYKTEFDF   56 (179)
T ss_dssp             CEEEEEEEECBTTCC--------------------HHHHHHHHHHHHHHHHHTT-----TSSEEEEEEEESSSEEEEECH
T ss_pred             CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHC-----CCCEEEEEEEEEEEEEEEECH
T ss_conf             768999997989989--------------------8999999999999999828-----775289999974234688511


Q ss_pred             CCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             778--488999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r  270 SWG--TEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN  347 (420)
Q Consensus       270 t~~--~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~  347 (420)
                      +..  ...+...+..+.  ..+|+|+...+|.++.+.+.....+             .+++.+|++|++|||..+.... 
T Consensus        57 ~~~~~~~~~~~~i~~i~--~~~g~t~~~~AL~~~~~~~f~~~~g-------------~R~~~~kvvvllTDG~s~d~~~-  120 (179)
T d1mjna_          57 SDYVKRKDPDALLKHVK--HMLLLTNTFGAINYVATEVFREELG-------------ARPDATKVLIIITDGEATDSGN-  120 (179)
T ss_dssp             HHHHHHCCHHHHHTTCC--CCCBCCCHHHHHHHHHHHTSSGGGT-------------CCTTSEEEEEEEESSCCSSCSC-
T ss_pred             HHCCCHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHCHHCC-------------CCCCCCEEEEEEECCCCCCCCH-
T ss_conf             43063688999986331--0158634999999999987161018-------------8999974999997899865406-


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHH
Q ss_conf             348999999997898799999548977---899999862189--82798179899999999999874
Q gi|254781110|r  348 VNTIKICDKAKENFIKIVTISINASPN---GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLM  409 (420)
Q Consensus       348 ~~~~~~c~~~k~~gi~i~tIgf~~~~~---~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I  409 (420)
                              ..+..|+.+|+||++....   ....|+..|+.|  .|+|.+++-++|.+.+++|.+.|
T Consensus       121 --------~~~~~~i~~~~igvg~~~~~~~~~~~L~~ias~p~~~~~~~~~~~~~L~~i~~~l~~~I  179 (179)
T d1mjna_         121 --------IDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI  179 (179)
T ss_dssp             --------CGGGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHHHHHC
T ss_pred             --------HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf             --------99974174406985244564004999999857996223997499999999999998439


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1)
species: Human (Homo sapiens) [TaxId: 9606]