HHSEARCH alignment of GI: 254781110 and SCOP domain: d1shux_

Alignment
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.71  E-value=9.4e-16  Score=118.11  Aligned_cols=175  Identities=15%  Similarity=0.129  Sum_probs=137.2

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467876554302232048764312445
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
                      ..|+.|++|.|+||..                     .+...++.+..++..+.     ....|++++.|++......++
T Consensus         5 ~~Div~llD~S~Sm~~---------------------~~~~~k~~~~~~~~~~~-----~~~~rvglv~fs~~~~~~~~l   58 (181)
T d1shux_           5 AFDLYFVLDKSGSVAN---------------------NWIEIYNFVQQLAERFV-----SPEMRLSFIVFSSQATIILPL   58 (181)
T ss_dssp             CEEEEEEEECSGGGGG---------------------GHHHHHHHHHHHHHHCC-----CTTEEEEEEEESSSEEEEEEE
T ss_pred             CEEEEEEEECCCCCCC---------------------CHHHHHHHHHHHHHHHC-----CCCCEEEEEEEECCEEEEEEE
T ss_conf             6589999947888533---------------------79999999999999726-----899789999960423799972


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf             77848899999986404678876538899999986131012334554334776778776662489960686777776534
Q gi|254781110|r  270 SWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVN  349 (420)
Q Consensus       270 t~~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~  349 (420)
                      +.+.......+..+....+.|+|+.+.||.++.+.+....                ..+.+|++|++|||..+... ...
T Consensus        59 ~~~~~~~~~~l~~l~~~~~~g~t~~~~al~~~~~~~~~~~----------------~~~~~~~ivliTDG~~~~~~-~~~  121 (181)
T d1shux_          59 TGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAG----------------GLKTSSIIIALTDGKLDGLV-PSY  121 (181)
T ss_dssp             ECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHT----------------GGGSCEEEEEEECCCCCTTH-HHH
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC----------------CCCCCEEEEEECCCCCCCCC-CHH
T ss_conf             4888999997653222367785068999999998763003----------------57875289992478778886-389


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC-HHHHHHHHHHHHHHH
Q ss_conf             899999999789879999954897789999986218982798179-899999999999874
Q gi|254781110|r  350 TIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVN-ADSLIHVFQNISQLM  409 (420)
Q Consensus       350 ~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~-~~~L~~aF~~Ia~~I  409 (420)
                      ....++.+|+.||.||+||+|. .+ ...|+..|++|+++|.+.+ .++|.+.++.|.+.|
T Consensus       122 ~~~~~~~~k~~gv~v~~vgig~-~~-~~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~~i  180 (181)
T d1shux_         122 AEKEAKISRSLGASVYCVGVLD-FE-QAQLERIADSKEQVFPVKGGFQALKGIINSILAQS  180 (181)
T ss_dssp             HHHHHHHHHHTTCEEEEEECSS-CC-HHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHHTB
T ss_pred             HHHHHHHHHHCCCEEEEEEECC-CC-HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf             9999999997898899999685-48-99999984899965994599999999999998633


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Capillary morphogenesis protein 2 domain
species: Human (Homo sapiens) [TaxId: 9606]