RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781110|ref|YP_003065523.1| von Willebrand factor type A
[Candidatus Liberibacter asiaticus str. psy62]
(420 letters)
>gnl|CDD|29222 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is
made up of approximately 200 amino acid residues folded
into a classic a/b para-rossmann type of fold. The vWA
domain, since its discovery, has drawn great interest
because of its widespread occurrence and its involvement
in a wide variety of important cellular functions. These
include basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains..
Length = 161
Score = 42.6 bits (99), Expect = 2e-04
Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 46/201 (22%)
Query: 193 IELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDV 252
I ++D+SGSM K+ K AL + S+
Sbjct: 3 IVFLLDVSGSM--------------------GGEKLDKAKEALKALVSSLSASP---PGD 39
Query: 253 YMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKP---TDSTPAMKQAYQILTSDK 309
+GL+ + + + T+ + + +D+L T+ A++ A ++L S K
Sbjct: 40 RVGLVTFGSNAR--VVLPLTTDTDKADLLEAIDALKKGLGGGTNIGAALRLALELLKSAK 97
Query: 310 KRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISI 369
+ + ++ II LTDGE N+ + + ++ I + TI I
Sbjct: 98 RPNA----------------RRVIILLTDGEPNDGPELLAEAA--RELRKLGITVYTIGI 139
Query: 370 NASPNGQRLLKTCVSSPEYHY 390
N L + +
Sbjct: 140 GDDANEDELKEIADKTTGGAV 160
>gnl|CDD|31433 COG1240, ChlD, Mg-chelatase subunit ChlD [Coenzyme metabolism].
Length = 261
Score = 39.5 bits (92), Expect = 0.002
Identities = 54/244 (22%), Positives = 88/244 (36%), Gaps = 65/244 (26%)
Query: 174 VSFIPALLRIEMGE-RPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALK 232
V+ P LR ++ E R LI VVD SGSM R +MAA K
Sbjct: 61 VAIEPEDLREKIREGRAGNLIVFVVDASGSM-------------------AARRRMAAAK 101
Query: 233 NALLLFLDSIDLLSHVKEDVY-----MGLIGYT-TRVEKNIEPSWGTEKVRQYVTRDMDS 286
A L L D Y + +I + + E + P+ E + + R
Sbjct: 102 GAALSLL----------RDAYQRRDKVAVIAFRGEKAELLLPPTSSVELAERALER---- 147
Query: 287 LILKPTDSTP---AMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNN 343
L TP A++QAY++L R+ + P + ++ +TDG N
Sbjct: 148 --LPTGGKTPLADALRQAYEVLA------------REKRRGPDR--RPVMVVITDGRANV 191
Query: 344 FKSN---VNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVS---SPEYHYNVVNADS 397
T++ K + I+++ I S L + YH + ++ DS
Sbjct: 192 PIPLGPKAETLEAASKLRLRGIQLLVIDTEGSEVRLGLAEEIARASGGEYYHLDDLSDDS 251
Query: 398 LIHV 401
++
Sbjct: 252 IVSA 255
>gnl|CDD|143873 pfam00092, VWA, von Willebrand factor type A domain.
Length = 177
Score = 37.0 bits (86), Expect = 0.010
Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 45/215 (20%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
++D SGS+ + K + ++++D+ + +
Sbjct: 4 FLLDGSGSI------GEANFEKV--------------KEFIKKLVENLDIG---PDGTRV 40
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTP---AMKQAYQILTSDKKR 311
GL+ Y++ V E S K + + + I T A+K A + L
Sbjct: 41 GLVQYSSDV--TTEFSLNDYKSKDDLLSAVLRNIYYLGGGTNTGKALKYALENL------ 92
Query: 312 SFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISI-N 370
F + R K +I LTDG++N+ ++ I + + + +
Sbjct: 93 -FRSAGSRPNAP-------KVVILLTDGKSNDGGLVPAAAAAL--RRKVGIIVFGVGVGD 142
Query: 371 ASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNI 405
RL+ + S + + V + D+L + + +
Sbjct: 143 VDEEELRLIASEPCSEGHVFYVTDFDALSDIQEEL 177
>gnl|CDD|29240 cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A
(vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses. In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Members of this subgroup are bacterial in
origin. They are typified by the presence of a MIDAS
motif..
Length = 180
Score = 34.1 bits (78), Expect = 0.074
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 325 PSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINAS 372
S ++ I+ LTDGENN ++ + AK ++I TI + S
Sbjct: 98 NSEAKERVIVLLTDGENN--AGEIDPATAAELAKNKGVRIYTIGVGKS 143
>gnl|CDD|29229 cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A
(vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Not much is known about the function of the
members of this subgroup. All members of this subgroup
however have a conserved MIDAS motif. .
Length = 206
Score = 32.7 bits (74), Expect = 0.20
Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 57/201 (28%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
+V+D SGSM T++ K AL +++ + + +
Sbjct: 25 IVLDNSGSMREV----DGG----------GETRLDNAKAALDETANALPDGTRLGLWTFS 70
Query: 255 GLIGYTTRVEKN------IEPSWGTEKVRQYVTRDMDSLILKPTDSTP---AMKQAYQIL 305
G V P G ++ + + PT TP A+ +A +
Sbjct: 71 GDGDNPLDVRVLVPKGCLTAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYV 130
Query: 306 TSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKE------ 359
D R ++ +TDGE+ C+ A+E
Sbjct: 131 --DPGRV------------------NVVVLITDGEDT------CGPDPCEVARELAKRRT 164
Query: 360 --NFIKIVTISINASPNGQRL 378
IK+ I + L
Sbjct: 165 PAPPIKVNVIDFGGDADRAEL 185
>gnl|CDD|29224 cd01451, vWA_Magnesium_chelatase, Magnesium chelatase: Mg-chelatase
catalyses the insertion of Mg into protoporphyrin IX
(Proto). In chlorophyll biosynthesis, insertion of Mg2+
into protoporphyrin IX is catalysed by magnesium
chelatase in an ATP-dependent reaction. Magnesium
chelatase is a three sub-unit (BchI, BchD and BchH)
enzyme with a novel arrangement of domains: the
C-terminal helical domain is located behind the
nucleotide binding site. The BchD domain contains a AAA
domain at its N-terminus and a VWA domain at its
C-terminus. The VWA domain has been speculated to be
involved in mediating protein-protein interactions..
Length = 178
Score = 31.7 bits (72), Expect = 0.37
Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 49/155 (31%)
Query: 192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKED 251
L+ VVD SGSM R +MAA K A+L L ++ + D
Sbjct: 2 LVIFVVDASGSM-------------------AARHRMAAAKGAVLSLLRD----AYQRRD 38
Query: 252 VYMGLIG-YTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTP---AMKQAYQILTS 307
+ LI T E + P+ E ++ + R L TP + AY++
Sbjct: 39 -KVALIAFRGTEAEVLLPPTRSVELAKRRLAR------LPTGGGTPLAAGLLAAYELAAE 91
Query: 308 DKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENN 342
+ + I+ +TDG N
Sbjct: 92 QARD---------------PGQRPLIVVITDGRAN 111
>gnl|CDD|34193 COG4548, NorD, Nitric oxide reductase activation protein [Inorganic
ion transport and metabolism].
Length = 637
Score = 30.7 bits (69), Expect = 0.80
Identities = 33/156 (21%), Positives = 52/156 (33%), Gaps = 45/156 (28%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
L+VD+S S M D+ R + ALL+ L ED+
Sbjct: 451 LLVDVSASTDAKM--------------DETRRVIDLFHEALLVLAHGHQALGD-SEDIL- 494
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDS---LILKPTDST---PAMKQAYQILTSD 308
+T+R + T K + + L+P T A++ A L
Sbjct: 495 ---DFTSRRRPWVR--INTVKDFDESMGETVGPRIMALEPGYYTRDGAAIRHASAKLMER 549
Query: 309 KKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF 344
+R QK +I L+DG+ N+F
Sbjct: 550 PQR------------------QKLLIVLSDGKPNDF 567
>gnl|CDD|29234 cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin
inhibitor (ITI): ITI is a glycoprotein composed of three
polypeptides- two heavy chains and one light chain
(bikunin). Bikunin confers the protease-inhibitor
function while the heavy chains are involved in
rendering stability to the extracellular matrix by
binding to hyaluronic acid. The heavy chains carry the
VWA domain with a conserved MIDAS motif. Although the
exact role of the VWA domains remains unknown, it has
been speculated to be involved in mediating
protein-protein interactions with the components of the
extracellular matrix..
Length = 171
Score = 30.1 bits (68), Expect = 1.1
Identities = 40/182 (21%), Positives = 59/182 (32%), Gaps = 49/182 (26%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
V+D SGSM TK+ K ALL L + Y
Sbjct: 7 FVIDTSGSM--------------------SGTKIEQTKEALLTALKDL------PPGDYF 40
Query: 255 GLIGYTTRVE--KNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRS 312
+IG++ VE S E V + L T+ A++ A ++L S
Sbjct: 41 NIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSV 100
Query: 313 FFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINAS 372
II LTDGE N + ++ +A I++ T I +
Sbjct: 101 ------------------PQIILLTDGEVTNESQILKNVR---EALSGRIRLFTFGIGSD 139
Query: 373 PN 374
N
Sbjct: 140 VN 141
>gnl|CDD|33614 COG3821, COG3821, Predicted membrane protein [Function unknown].
Length = 234
Score = 28.8 bits (64), Expect = 2.7
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 26 FALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAAILAGASKMVSNLSRLGDRFESISNH 85
F L V +L + + W S N +IL GA M ++ + + E +
Sbjct: 111 FELKVGGLTVLFAYSFFKFGW-----SYRLFNYCSILIGAIPMWADNAVDAEAAERAAER 165
Query: 86 AKRALIDDAKRF 97
A R I AK F
Sbjct: 166 AIRMNILAAKHF 177
>gnl|CDD|29238 cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A
(vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Not much is known about the function of the VWA
domain in these proteins. The members do have a
conserved MIDAS motif. The biochemical function however
is not known..
Length = 170
Score = 29.0 bits (65), Expect = 2.8
Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 52/213 (24%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
V+D SGSM K+ +K+AL L +D + D +
Sbjct: 5 FVIDRSGSM--------------------DGPKLPLVKSALKLLVDQLR------PDDRL 38
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTP---AMKQAYQILTSDKKR 311
++ Y E + + +K + +D L ST ++ YQ
Sbjct: 39 AIVTYDGAAETVLPATPVRDKAA--ILAAIDR--LTAGGSTAGGAGIQLGYQEAQK---- 90
Query: 312 SFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIK--ICDKAKENFIKIVTISI 369
+F GV I+ TDG+ N +++ + + + K + I + T+
Sbjct: 91 ----HFVPGGV--------NRILLATDGDFNVGETDPDELARLVAQKRESG-ITLSTLGF 137
Query: 370 NASPNGQRLLKTCVSSPEYHYNVVNADSLIHVF 402
+ N + + + N VF
Sbjct: 138 GDNYNEDLMEAIADAGNGNTAYIDNLAEARKVF 170
>gnl|CDD|38865 KOG3661, KOG3661, KOG3661, Uncharacterized conserved protein
[Function unknown].
Length = 1019
Score = 28.5 bits (63), Expect = 3.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 12 KKGIASEKANFSIIFALSVMSFLLLIGFLIYVLDWH 47
+ I+S ++I + VM+F LL +YVLDWH
Sbjct: 650 QACISSRFLQGTVIALVVVMAFCLLAMSALYVLDWH 685
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 28.3 bits (63), Expect = 4.1
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 22 FSIIFALSVMSFLLLIGFLIYVLDWHYKKNSME--SANNAAILAGASKMVSNLSRLGDRF 79
FSI AL + LLL+ +I L + + + AA+ + + V + L
Sbjct: 156 FSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAEL--LI 213
Query: 80 ESISNHAKRALIDDAKRFIKNHIKES 105
+ + AL ++K K++
Sbjct: 214 FGAEDAYRTALEATEASWLKAQRKQA 239
>gnl|CDD|114542 pfam05820, DUF845, Baculovirus protein of unknown function
(DUF845). This family consists of several highly
related Baculovirus proteins of unknown function.
Length = 119
Score = 28.4 bits (64), Expect = 4.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 330 QKFIIFLTDGENNNFKSNVNTIKIC 354
+ I +L D + N+ +N+N IKIC
Sbjct: 9 ELLIHYLFDNKTNDTSNNINVIKIC 33
>gnl|CDD|147288 pfam05028, PARG_cat, Poly (ADP-ribose) glycohydrolase (PARG).
Poly(ADP-ribose) glycohydrolase (PARG), is a
ubiquitously expressed exo- and endoglycohydrolase which
mediates oxidative and excitotoxic neuronal death.
Length = 339
Score = 27.3 bits (61), Expect = 7.8
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 288 ILKPTDSTPAM---KQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF 344
+LK D+ +Q +L + SFF F R+ + S P F N
Sbjct: 38 LLKQQDAGSVTLSQEQIAALLAN----SFFCLFPRRNREESSFPDINFDRLFQSLYNGRS 93
Query: 345 KSNVNTIK 352
+S +K
Sbjct: 94 ESQEEKLK 101
>gnl|CDD|34100 COG4393, COG4393, Predicted membrane protein [Function unknown].
Length = 405
Score = 27.2 bits (60), Expect = 9.6
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 19 KANFSIIFALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAAILAGASKMVSNLSRL 75
K F + ++ +L I FL+++ K++ + NNA + + + +N RL
Sbjct: 193 KFENKSTFYIYILFTILAIIFLLFLFKDSRKRHIVTQKNNAILKRKKAALKNNKHRL 249
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.135 0.383
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,830,627
Number of extensions: 253976
Number of successful extensions: 757
Number of sequences better than 10.0: 1
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 40
Length of query: 420
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,189,273
Effective search space: 1357324452
Effective search space used: 1357324452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)