RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781110|ref|YP_003065523.1| von Willebrand factor type A
[Candidatus Liberibacter asiaticus str. psy62]
(420 letters)
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 220
Score = 41.9 bits (97), Expect = 1e-04
Identities = 22/231 (9%), Positives = 64/231 (27%), Gaps = 30/231 (12%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
+VD S +M S ED + T + S + S + +
Sbjct: 7 FLVDASKAMF---ESQSED----------ELTPFDMSIQCIQSVYISKIISS---DRDLL 50
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
++ Y T +KN +++ ++ ++ +Q +
Sbjct: 51 AVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSL 110
Query: 315 TNFFRQGVKI----PSLPFQKFIIFLTDGENNNFKSNVNT---IKICDKAKENFIKIVTI 367
+ + K I+ T+ +N + + ++ I + +
Sbjct: 111 SEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLM 170
Query: 368 SI------NASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHR 412
+ + S + ++ + + + L + + + +
Sbjct: 171 HLKKPGGFDISLFYRDIISI-AEDEDLRVHFEESSKLEDLLRKVRAKETRK 220
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 41.1 bits (95), Expect = 2e-04
Identities = 22/178 (12%), Positives = 49/178 (27%), Gaps = 20/178 (11%)
Query: 193 IELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDV 252
+ L +D+ +M ++ + K + +F+ + +D
Sbjct: 5 VVLCMDVGFTMSNSIPGIE--------------SPFEQAKKVITMFVQ--RQVFAENKD- 47
Query: 253 YMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRS 312
+ L+ + T N + V R + + + Q
Sbjct: 48 EIALVLFGTDGTDNPLSGGDQYQN-ITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDAL 106
Query: 313 FFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISIN 370
+ Q I ++ I TD + KS ++ I K+ I +
Sbjct: 107 IVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIII--HSLKKCDISLQFFLPF 162
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 209
Score = 38.1 bits (87), Expect = 0.001
Identities = 33/232 (14%), Positives = 77/232 (33%), Gaps = 53/232 (22%)
Query: 193 IELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDV 252
I LV+D S S+ + K +L+ ++ +
Sbjct: 4 IYLVLDGSDSI--------------------GASNFTGAKKSLVNLIEKVASYG---VKP 40
Query: 253 YMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKP------TDSTPAMKQAYQILT 306
GL+ Y T + ++ S +VT+ ++ + + T++ A++ Y +++
Sbjct: 41 RYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMS 100
Query: 307 SDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENN----------NFKSNVNTIKICDK 356
+ II +TDG +N + + K
Sbjct: 101 WPD----------DVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKN 150
Query: 357 AKENFIKIVTISINASPNGQRLLKTCVSSP---EYHYNVVNADSLIHVFQNI 405
+E+++ + + N Q + S ++ + V + ++L VF +
Sbjct: 151 PREDYLDVYVFGVGPLVN-QVNINALASKKDNEQHVFKVKDMENLEDVFYQM 201
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 33.4 bits (75), Expect = 0.033
Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 46/216 (21%)
Query: 193 IELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDV 252
+ V+D SGS+ + ++ F+ ++
Sbjct: 8 LYFVLDKSGSV-----------------ANNWIEIYNFVQQLAERFVSP---------EM 41
Query: 253 YMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRS 312
+ I ++++ + + K+ + + + T +K A + +
Sbjct: 42 RLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLK 101
Query: 313 FFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINAS 372
II LTDG+ + K ++ + + +
Sbjct: 102 ----------------TSSIIIALTDGKLDG-LVPSYAEKEAKISRSLGASVYCVGVLDF 144
Query: 373 PNGQRLLKTCVSSPEYHYNVV-NADSLIHVFQNISQ 407
Q L+ S E + V +L + +I
Sbjct: 145 --EQAQLERIADSKEQVFPVKGGFQALKGIINSILA 178
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 189
Score = 31.1 bits (69), Expect = 0.17
Identities = 28/216 (12%), Positives = 55/216 (25%), Gaps = 41/216 (18%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
++D SGS+ A + N + + +
Sbjct: 7 FLIDGSGSI--------------------SSRNFATMMNFVRAVISQ---FQRPSTQFSL 43
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
+ E + + T A++ L
Sbjct: 44 MQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTA--TAIQNVVHRLFHASYG--- 98
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT-IKICDKAKENFIKIVTISINASP 373
R+ K +I +TDG+ + I + D A I +
Sbjct: 99 ---ARRDA-------AKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNR 148
Query: 374 NGQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQ 407
N + L S P E+ + V + D+L + + +
Sbjct: 149 NSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKE 184
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 202
Score = 29.5 bits (65), Expect = 0.48
Identities = 18/215 (8%), Positives = 62/215 (28%), Gaps = 41/215 (19%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
++D S + + LK ++ ++ + +S V +
Sbjct: 18 FLLDGSSRL--------------------SEAEFEVLKAFVVDMMERLR-VSQKWVRVAV 56
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
+ ++ ++R+ ++ + + ++ +K + S R
Sbjct: 57 VEYHDGSHAYIGLKDRKRPSELRRIASQ-VKYAGSQVASTSEVLKYTLFQIFSKIDRPEA 115
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374
+ + + L + + + N ++ K+ + ++ + I N
Sbjct: 116 S---------------RIALLLMASQEPQ-RMSRNFVRYVQGLKKKKVIVIPVGIGPHAN 159
Query: 375 GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQ 407
+ ++ + + + D L I
Sbjct: 160 -LKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVS 193
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1
alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 29.2 bits (64), Expect = 0.61
Identities = 27/216 (12%), Positives = 63/216 (29%), Gaps = 41/216 (18%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
++D SGS+ +K + ++ + K
Sbjct: 10 FLIDGSGSI--------------------IPHDFRRMKEFVSTVMEQLK-----KSKTLF 44
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
L+ Y+ + + +L T + +++ + L + +
Sbjct: 45 SLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARK 104
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENN-NFKSNVNTIKICDKAKENFIKIVTISINASP 373
F ++ +TDGE + + I D+ I S
Sbjct: 105 NAFK-------------ILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSE 151
Query: 374 NGQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQ 407
++ L T S P ++ + V N ++L + + +
Sbjct: 152 KSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLRE 187
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large
subunit allosteric, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 28.4 bits (63), Expect = 1.2
Identities = 9/62 (14%), Positives = 23/62 (37%)
Query: 70 SNLSRLGDRFESISNHAKRALIDDAKRFIKNHIKESLSGYSAVFYNTEIQNIVNSSRISM 129
S + + G S+ K ++D A + +K + + +A+ N +++
Sbjct: 2 STMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHE 61
Query: 130 TH 131
Sbjct: 62 GR 63
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 27.9 bits (62), Expect = 1.5
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 57 NNAAILAGASKMVSNLSRLGDRFESISNH--------AKRALIDDAKRFIKNHIKESLSG 108
++ I M+ NL + IS + L + I + I + L
Sbjct: 354 PHSRIKNSVETMMVNLQGVDIPLGMISQYLPKQFERIQSGELSAIPHQLIMDKIYDVLRA 413
Query: 109 YSA 111
Y
Sbjct: 414 YRY 416
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 27.5 bits (60), Expect = 2.2
Identities = 23/224 (10%), Positives = 60/224 (26%), Gaps = 45/224 (20%)
Query: 188 RPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSH 247
+P+ +I L++D S S + +K+ F+ ++
Sbjct: 1 QPLDVI-LLLDGSSSF--------------------PASYFDEMKSFAKAFISKANIGPR 39
Query: 248 VKEDVYMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTS 307
+ ++ Y I+ W + ++ +D M++
Sbjct: 40 ---LTQVSVLQY--GSITTIDVPWNVVPEKAHLLSLVDV-----------MQREGGPSQI 83
Query: 308 DKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTI 367
F + + K ++ L + + D A+ N + + I
Sbjct: 84 GDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS-----VDAAADAARSNRVTVFPI 138
Query: 368 SINASPNGQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLM 409
I + L+ + + L + + +
Sbjct: 139 GIGDRYD-AAQLRILAGPAGDSNVVKLQRIEDLPTMVTLGNSFL 181
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
Length = 524
Score = 26.5 bits (57), Expect = 4.6
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 2/111 (1%)
Query: 76 GDRFESISNHAKRALIDDAKRFIKNHIKESLSGYSAVFYNTEIQNIVNSSRISMTHMANN 135
G R++ + + + + ++ + + ++ AVF+N I +I+ +
Sbjct: 50 GYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVS-TTITEPKQITALVSNMD 108
Query: 136 RLDSSNNTIFYNMDVMTS-YDYRLQFIEHLLNQRYNQKIVSFIPALLRIEM 185
LD N + D Y+ LQ + Q I +
Sbjct: 109 SLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 159
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein,
RoRNP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 174
Score = 26.0 bits (56), Expect = 5.6
Identities = 21/178 (11%), Positives = 48/178 (26%), Gaps = 48/178 (26%)
Query: 195 LVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYM 254
L +D+S SM+ + A++ A + + +
Sbjct: 10 LAIDVSASMN---------------QRVLGSILNASVVAAAMCM-------LVARTEKDS 47
Query: 255 GLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFF 314
++ ++ + + + V M + + TD M A + T+
Sbjct: 48 HMVAFSDEM---LPCPITVNMLLHEVVEKMSDITMGSTDCALPMLWAQKTNTA------- 97
Query: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENN-NFKSNVNTIKICDKAKENFIKIVTISINA 371
I TD E N +K + K++ ++ +
Sbjct: 98 ---------------ADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTS 140
>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 369
Score = 26.2 bits (57), Expect = 5.7
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 92 DDAKRFIKNHIKESLSGYSAVFYNTEIQNIVN 123
+DAK++ + I+ V +N ++V
Sbjct: 337 EDAKKYFLDQIEVCRDKGWTVQFN-WFLHLVL 367
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function
associated antigen-1, LFA-1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 26.0 bits (56), Expect = 6.1
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 331 KFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSP--EY 388
K +I +TDGE ++ I I + Q L S P E+
Sbjct: 105 KVLIIITDGEAT------DSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEF 158
Query: 389 HYNVVNADSLIHVFQNISQ 407
+ + L + + +
Sbjct: 159 VKILDTFEKLKDLCTELQK 177
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume
(Griffonia simplicifolia) [TaxId: 3850]}
Length = 243
Score = 25.8 bits (56), Expect = 6.4
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 241 SIDLLSHVKEDVYMGLIGYTTRVEKNIEPSW 271
+DL + + V +G E SW
Sbjct: 202 VVDLAKVLPQKVRIGFSAGVGYDEVTYILSW 232
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.383
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,477,440
Number of extensions: 66811
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 26
Length of query: 420
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,199,356
Effective search space: 398186192
Effective search space used: 398186192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)