BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781110|ref|YP_003065523.1| von Willebrand factor type A
[Candidatus Liberibacter asiaticus str. psy62]
(420 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 420
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/420 (100%), Positives = 420/420 (100%)
Query: 1 MHLLSRFRFYFKKGIASEKANFSIIFALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAA 60
MHLLSRFRFYFKKGIASEKANFSIIFALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAA
Sbjct: 1 MHLLSRFRFYFKKGIASEKANFSIIFALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAA 60
Query: 61 ILAGASKMVSNLSRLGDRFESISNHAKRALIDDAKRFIKNHIKESLSGYSAVFYNTEIQN 120
ILAGASKMVSNLSRLGDRFESISNHAKRALIDDAKRFIKNHIKESLSGYSAVFYNTEIQN
Sbjct: 61 ILAGASKMVSNLSRLGDRFESISNHAKRALIDDAKRFIKNHIKESLSGYSAVFYNTEIQN 120
Query: 121 IVNSSRISMTHMANNRLDSSNNTIFYNMDVMTSYDYRLQFIEHLLNQRYNQKIVSFIPAL 180
IVNSSRISMTHMANNRLDSSNNTIFYNMDVMTSYDYRLQFIEHLLNQRYNQKIVSFIPAL
Sbjct: 121 IVNSSRISMTHMANNRLDSSNNTIFYNMDVMTSYDYRLQFIEHLLNQRYNQKIVSFIPAL 180
Query: 181 LRIEMGERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLD 240
LRIEMGERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLD
Sbjct: 181 LRIEMGERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLD 240
Query: 241 SIDLLSHVKEDVYMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQ 300
SIDLLSHVKEDVYMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQ
Sbjct: 241 SIDLLSHVKEDVYMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDSLILKPTDSTPAMKQ 300
Query: 301 AYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKEN 360
AYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKEN
Sbjct: 301 AYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKEN 360
Query: 361 FIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHRKYSVILKG 420
FIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHRKYSVILKG
Sbjct: 361 FIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHRKYSVILKG 420
>gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 398
Score = 69.7 bits (169), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 11/118 (9%)
Query: 292 TDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNN---FKSNV 348
T++ PAM AY+ L ++K+ S T I S +KF+IF+TDGEN+ +++ +
Sbjct: 275 TNTYPAMHHAYRELYNEKESSHNT--------IGSTRLKKFVIFITDGENSGASAYQNTL 326
Query: 349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNIS 406
NT++IC+ + +KI +++++A P GQ LL+ C S + V ++ L+ F I+
Sbjct: 327 NTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKIT 384
Score = 31.2 bits (69), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 39 FLIYVLDWH---YKKNSMESANNAAILAGASKMVSNLSRLGDRFESISNHAKRALIDDAK 95
F+ Y +D Y +N M+SA +AA+L+G + +VS DR +I + + D
Sbjct: 12 FITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVS------DR--TIKDPTTKK--DQTS 61
Query: 96 RFIKNHIKESLSGYSAVFYNTEIQNIVNSSRISMTHMANNRL 137
K IK+ L S + N +I ++I++T NN L
Sbjct: 62 TIFKKQIKKHLKQGSYIRENA--GDIAQKAQINITKDKNNPL 101
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 64.7 bits (156), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 227 KMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDS 286
K+ ++ LD I + V V GL+ +++++ + +WG + +++ + R
Sbjct: 191 KLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINR---- 246
Query: 287 LIL-KPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK 345
LI T STP ++ AY + K++ + + ++K+IIFLTDGEN++
Sbjct: 247 LIFGSTTKSTPGLEYAYNKIFDAKEK-------LEHIAKGHDDYKKYIIFLTDGENSSPN 299
Query: 346 -SNVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQN 404
N ++ C++AK + I + A Q LK C +SP+ Y+V N+ L F
Sbjct: 300 IDNKESLFYCNEAKRRGAIVYAIGVQAEAADQ-FLKNC-ASPDRFYSVQNSRKLHDAFLR 357
Query: 405 ISQLMVHRK 413
I + MV ++
Sbjct: 358 IGKEMVKQR 366
>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 374
Score = 62.4 bits (150), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 169/400 (42%), Gaps = 51/400 (12%)
Query: 19 KANFSIIFALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAAILAGASKMVSNLSRLGDR 78
K +I+ A+ + L++G +I V + K + S + +++ A+++++
Sbjct: 16 KGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMN-------- 67
Query: 79 FESISNHAKRALIDDAKRFIKNHIKESLSG--YSAVFYNTEIQNIVNSSRISMTHMANNR 136
E N+ K+ D IKN S F N +I +IV S+ + + + N
Sbjct: 68 -EGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVN-DIDDIVRSTSLDIVVVPQNE 125
Query: 137 LDSSNNTIFYNMDVMTSYDYRLQFIEHLLNQRYNQKIVSFIPALLRIEMGERPIFLIELV 196
Y++ ++ Y L+F + ++ IV I + +++ + +V
Sbjct: 126 --------GYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIV 177
Query: 197 VDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGL 256
+D+S SM D TK+ ++ L+ + L+ V V GL
Sbjct: 178 LDVSRSMESFF--------------DSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGL 223
Query: 257 IGYTTRVEKNIEPSWGTEKVR---QYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSF 313
+ ++ ++E+ WG ++ +Y+++ S T+STP +K AY + F
Sbjct: 224 VTFSNKIEEFFLLEWGVSHLQRKIKYLSKFGVS-----TNSTPGLKYAYN-------QIF 271
Query: 314 FTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASP 373
RQ ++K I+F+TDGEN + K + ++ C++AK+ + I I
Sbjct: 272 DMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRV-I 330
Query: 374 NGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQLMVHRK 413
L+ C +SP Y V N S+ F +I + +V ++
Sbjct: 331 RSHEFLRAC-ASPNSFYLVENPHSMYDAFSHIGKDIVTKR 369
>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 458
Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 231 LKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSWGTEKVRQYVTRD--MDSLI 288
+++AL + SI + +V + V MG + RV + SWG K+ + + + +D
Sbjct: 274 VRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENE 333
Query: 289 LKPTDSTPAMKQAYQILTS---DKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK 345
+ T AM+ AY + S D+ N L +K+I+ LTDGEN +
Sbjct: 334 MGSTAINDAMQTAYDTIISSNEDEVHRMKNN----------LEAKKYIVLLTDGENT--Q 381
Query: 346 SNVNTIKICDKAKENFIKIVTISINASPNGQR----LLKTCVSSPEYHYNVVNADSLIHV 401
N I IC+KAK I+I+TI+ + + Q L C +SP + + L +
Sbjct: 382 DNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNC-ASPNSFFEANSTHELNKI 440
Query: 402 FQN 404
F++
Sbjct: 441 FRD 443
Score = 47.0 bits (110), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 5 SRFRFYFKKGIASEKANFSIIFALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAAILAG 64
++F FY KK I S +F II AL + L + G L+ V+ W Y +++++ A AI+
Sbjct: 5 TKFIFYSKKLIKSCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITA 64
Query: 65 ASKMVSNLSRLGDRFESISNHAKRALIDDAKRFIKNHIKESLSGYSAVFYNTEIQNIVNS 124
+ ++ +L + R ++ K+ + + R +N++K++ F + E+++IV
Sbjct: 65 SVPLIQSLEEVSSRAKNSFTFPKQKIEEYLIRNFENNLKKN-------FTDREVRDIVRD 117
Query: 125 SRISM 129
+ + M
Sbjct: 118 TAVEM 122
>gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC
[Candidatus Liberibacter asiaticus str. psy62]
Length = 581
Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 42 YVLDWHYKKNSMESANNAAILAGASKMVSNLSRLGDR-FESISNHAK 87
Y+ D H + + SAN IL G S +N G + F +I ++ K
Sbjct: 277 YLSDGHARYQAKFSANEITILPGKSITTTNFLFAGAKEFPTIHHYEK 323
>gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 628
Score = 23.1 bits (48), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 84 NHAKRALIDDAKRFIKNHIKESLSGYSAVFYNTEIQNIVNSSRISMTHMANNRLD-SSNN 142
N A + I KRF+ I E S F E QN+ ++ + NN L N
Sbjct: 517 NTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQ----ALAELRNNGLKFEIMN 572
Query: 143 TIFY 146
T FY
Sbjct: 573 TSFY 576
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,760
Number of Sequences: 1233
Number of extensions: 10929
Number of successful extensions: 36
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 11
length of query: 420
length of database: 328,796
effective HSP length: 76
effective length of query: 344
effective length of database: 235,088
effective search space: 80870272
effective search space used: 80870272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)