HHsearch alignment for GI: 254781111 and conserved domain: PRK10888
>PRK10888 octaprenyl diphosphate synthase; Provisional.
Probab=100.00 E-value=0 Score=375.49 Aligned_cols=213 Identities=24% Similarity=0.399 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 8999999999999999999997675302457157999998750-586007999999999961788222240246888899
Q gi|254781111|r 5 LPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIH 83 (237)
Q Consensus 5 l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH 83 (237)
T Consensus 6 i~~~v~~dl~~v~~~l~~~-------~~~-~~~~i~~~~~~~~~~GGKRlRP~l~ll~~~~~g~~~~~~~~~AaaiEliH 77 (323)
T PRK10888 6 INELTAQDMAGVNAAILEQ-------LNS-DVQLINQLGYYIISGGGKRIRPMIAVLAARAVGYQGNAHVTIAALIEFIH 77 (323)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998-------668-81889999999882698608599999999982998388999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99986477654453223445566543243452013322223347999973102341267888887653222356641133
Q gi|254781111|r 84 CYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQ 163 (237)
Q Consensus 84 ~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ 163 (237)
T Consensus 78 ~asLiHDDi--iD~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~-------~~~~~~~~~~--~~~~eGe 146 (323)
T PRK10888 78 TATLLHDDV--VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSL-------KVLEVMSEAV--NVIAEGE 146 (323)
T ss_pred HHHHHHCCC--CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHH--HHHHHHH
T ss_conf 999987465--6799888998540133044216762029998888866512766-------8999999999--9999688
Q ss_pred CCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC
Q ss_conf 222100---00003679999999863489999999999759888999999999999849999986765344320---67
Q gi|254781111|r 164 MLDIQD---EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL---PK 236 (237)
Q Consensus 164 ~~dl~~---~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~k 236 (237)
T Consensus 147 ~~q~~~~~~~~~~~~~yl~~i~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~AFQI~DDlLD~~gd~~~~GK 225 (323)
T PRK10888 147 VLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGEQLGK 225 (323)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
T ss_conf 9999854278999999999999999999999999999870999999999999999999999999975202478788689