HHsearch alignment for GI: 254781111 and conserved domain: TIGR02748
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II; InterPro: IPR014119 The proteins in this entry are component II of the heterodimeric heptaprenyl diphosphate synthase. They are found proximate to the gene for component I (IPR009920 from INTERPRO). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis..
Probab=100.00 E-value=0 Score=342.75 Aligned_cols=215 Identities=29% Similarity=0.421 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHH
Q ss_conf 48999999999999999999997675302457157999998750-586007999999999961-7882222402468888
Q gi|254781111|r 4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLF-NVNHLTALRVGAAIEC 81 (237)
Q Consensus 4 ~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~-~~~~~~~~~~AaavEl 81 (237)
T Consensus 4 ~~Y~~l~~Di~~iE~EL~~~v~-------Ga~~~~l~eA~l~LL~AGGKRIRPVFVLLag~fGP~Ydl~~~K~vAV~LEL 76 (325)
T TIGR02748 4 DIYSFLQKDIESIEKELEKAVQ-------GAEHPVLSEAALHLLKAGGKRIRPVFVLLAGKFGPDYDLDKIKHVAVALEL 76 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 8899988769999999999985-------206873578999999818940017999867630775335546567655767
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999864776544532234455665432434520133222233479999731023412678888876532223566411
Q gi|254781111|r 82 IHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLG 161 (237)
Q Consensus 82 lH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (237)
T Consensus 77 IHMASLVHDDV--ID~A~LRRG~~Ti~skW~NRiAMYTGDYlfA~slE~~t~i~dp~~H~~LS~tivE---------vc~ 145 (325)
T TIGR02748 77 IHMASLVHDDV--IDDADLRRGKPTIKSKWDNRIAMYTGDYLFAKSLETMTEIKDPRAHQILSKTIVE---------VCL 145 (325)
T ss_pred HHCCCCCCCCC--CCCCCCCCCCHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------HHH
T ss_conf 73532025652--0587677884201210277322003358999999998516982788999999998---------862
Q ss_pred CCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC
Q ss_conf 3322210000---00367999999986348999999999975988899999999999984999998676534432---06
Q gi|254781111|r 162 GQMLDIQDEF---IDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED---LP 235 (237)
Q Consensus 162 GQ~~dl~~~~---~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D---~~ 235 (237)
T Consensus 146 GEIEQIkDkYN~dQ~lR~YLRRIKRKTALLIA~SCqLGAia~Ga~~~~~~~LY~FGYYvGMSyQI~DDiLDFvgTee~LG 225 (325)
T TIGR02748 146 GEIEQIKDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGADEAIVKKLYWFGYYVGMSYQIIDDILDFVGTEEELG 225 (325)
T ss_pred CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 21010010137888600366566688999999877652000588987877365533542014544432136646631168
Q ss_pred C
Q ss_conf 7
Q gi|254781111|r 236 K 236 (237)
Q Consensus 236 k 236 (237)
T Consensus 226 K 226 (325)
T TIGR02748 226 K 226 (325)
T ss_pred C
T ss_conf 8