HHsearch alignment for GI: 254781111 and conserved domain: TIGR03465
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=93.93 E-value=0.32 Score=26.48 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=47.6
Q ss_pred HHHCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 64113322210000-0036799999998634899999999997598889999999999998499999867653443206
Q gi|254781111|r 158 GMLGGQMLDIQDEF-IDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDLP 235 (237)
Q Consensus 158 ~l~~GQ~~dl~~~~-~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~~ 235 (237)
T Consensus 89 ~li~g~~~Dl~~~~~~t~~~L~~Y~~~vA~~vg~m~~~---ilg~~~~~----~~~~A~~lG~A~QltNilRDv~eD~~ 160 (266)
T TIGR03465 89 EVIDGMEMDLEQTRYPDFAELDLYCDRVAGAVGRLSAR---IFGATDAR----TLEYAHHLGRALQLTNILRDVGEDAR 160 (266)
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999985578999999999999999863699999998---80899757----89999999999999999997188997