HHsearch results for GI: 254781111 and protein with PDBid: 1wmw_A
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genomics; 1.55A {Thermus thermophilus HB8}
Probab=100.00 E-value=0 Score=332.61 Aligned_cols=190 Identities=22% Similarity=0.273 Sum_probs=161.4
Q ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5799999875-058600799999999996178822224024688889999986477654453223445566543243452
Q gi|254781111|r 37 DRLLSAIRYA-LLGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVT 115 (237)
Q Consensus 37 ~~l~~~~~y~-l~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~ 115 (237)
+.+.++++|. .+||||+||.|++++++++|++.+.++++|+++|++|+|||||||| ||+|++|||+||+|.+||++.
T Consensus 25 ~~~~~~~~~~~~~gGK~~R~~l~~~~~~~~~~~~~~~~~~A~a~EliH~asLihDDi--~D~s~~RRG~pt~h~~~G~~~ 102 (330)
T 1wmw_A 25 PLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDI--EDGSEERRGRPALHRLHPMPL 102 (330)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECHHHHSCHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHCCCCC
T ss_conf 689999999885696409999999999981998789999999999999999987576--779999898804988717632
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf 01332222334799997310234126788888765322235664113322210000-----0036799999998634899
Q gi|254781111|r 116 AIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF-----IDETQVFMIQKMKTGALMC 190 (237)
Q Consensus 116 AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~-----~~~~~y~~i~~~KTa~lf~ 190 (237)
|||+||||++++|+++++......... ..+..+++. ...++.||.+|+.+.. .++++|++++.+|||+||.
T Consensus 103 Ail~Gd~L~a~a~~~l~~~~~~~~~~~--~~~~~~~~~--~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~Kta~l~~ 178 (330)
T 1wmw_A 103 ALNAGDAMHAEMWGLLAEGLARGLFPP--EVLLEFHEV--VRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTA 178 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCH--HHHHHHHHH--HHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 010541888899999998652365539--999999886--4223776342201012232232699999998872788899
Q ss_pred H-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-9999999759888999999999999849999986765344320
Q gi|254781111|r 191 F-ACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 191 ~-~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
+ |+.+|++++|.++. +.+.+||.++|++|||+||++|++||.
T Consensus 179 ~~~~~~ga~~ag~~~~--~~l~~~g~~lG~afQi~DDlld~~~~~ 221 (330)
T 1wmw_A 179 VAPLRLGALLAGKTPP--AAYEEGGLRLGTAFQIVDDVLNLEGGE 221 (330)
T ss_dssp HHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8799988766011257--899999998778999757878753006