HHsearch results for GI: 254781111 and protein with PDBid: 2j1p_A
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A*
Probab=100.00 E-value=0 Score=363.05 Aligned_cols=220 Identities=34% Similarity=0.561 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999999999997675302457157999998750-586007999999999961788222240246888899999
Q gi|254781111|r 8 KLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYS 86 (237)
Q Consensus 8 ~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~as 86 (237)
.+.+..+.|++.|++. ++...|..+.++++|.+ .||||+||.|++++++++|++++.++++|+++|++|++|
T Consensus 16 ~~~~~~~~v~~~l~~~-------~~~~~p~~l~~~~~y~~~~GGKrlRp~L~~~~~~~~g~~~~~~~~~a~aiEllH~as 88 (293)
T 2j1p_A 16 YIIRKADSVNKALDSA-------VPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMS 88 (293)
T ss_dssp HHHHHHHHHHHHHHHH-------SCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999975-------576785679999998983787528899999999980998788999999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 864776544532234455665432434520133222233479999731023-4126788888765322235664113322
Q gi|254781111|r 87 LIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQ-LKDNIRSQLMLSLTHNIGLQGMLGGQML 165 (237)
Q Consensus 87 LihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~GQ~~ 165 (237)
||||||+++|+|++|||+||+|++||++.||++||+|+++++++++..... .........+..+++..+..+++.||..
T Consensus 89 LIHDDI~d~D~s~~RRG~pt~h~~~g~~~Ail~GD~l~~~a~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 168 (293)
T 2j1p_A 89 LIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVV 168 (293)
T ss_dssp HHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98827744678887787265888728404356432899999999876135545789999999999999999999999999
Q ss_pred CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2100-----00003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r 166 DIQD-----EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 166 dl~~-----~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
++.. ...+++.|..|+.+|||+||.++|.+||+++|++++..+.+.+||.++|+||||+||++|++||.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~KTa~l~~~~~~~gaila~~~~~~~~~l~~~G~~lGiAFQI~DDilD~~~d~ 242 (293)
T 2j1p_A 169 DISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS 242 (293)
T ss_dssp TTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 88764113456789999999999889999999999897729999999999999857003443340444410697