HHsearch results for GI: 254781111 and protein with PDBid: 3aqb_B
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=0 Score=339.70 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 348999999999999999999997675302457157999998750-5860079999999999617882222402468888
Q gi|254781111|r 3 GGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIEC 81 (237)
Q Consensus 3 ~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEl 81 (237)
-++++.+++...+|++.+.+.+. ..++.+.++++|.+ .||||+||+|++++++++|++.+.++++|+++|+
T Consensus 4 ~~~~~~l~~~~~~v~~~l~~~~~--------~~~~~~~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEl 75 (325)
T 3aqb_B 4 LSYKAFLNPYIIEVEKRLYECIQ--------SDSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLEL 75 (325)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC--------CSSHHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 46999999999999999998755--------7857899999999838985186999999998829987899999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999864776544532234455665432434520133222233479999731023412678888876532223566411
Q gi|254781111|r 82 IHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLG 161 (237)
Q Consensus 82 lH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (237)
+|+|||||||| +|+|+.|||+||+|.+||+..|||+||++++.+++.+........ .... ... ...++.
T Consensus 76 lH~asLIhDDI--~D~~~~RRg~pt~h~~~G~~~ail~Gd~l~~~a~~~~~~~~~~~~----~~~~---~~~--~~~~~~ 144 (325)
T 3aqb_B 76 VHMASLVHDDY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKF----HQIF---SKT--ILEVCF 144 (325)
T ss_dssp HHHHHHHHHHH--HHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHH----HHHH---HHH--HHHHHH
T ss_pred HHHHHHHHCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH----HHHH---HHH--HHHHHH
T ss_conf 99999985888--889988789987665314689998346788877775321334689----9999---998--765411
Q ss_pred CCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C
Q ss_conf 33222100---00003679999999863489999999999759888999999999999849999986765344320---6
Q gi|254781111|r 162 GQMLDIQD---EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL---P 235 (237)
Q Consensus 162 GQ~~dl~~---~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~ 235 (237)
||..++.. ..++++.|++|++.|||+||+++|.+|+++++++++..+.+.+||.++|++|||+||++|++||. |
T Consensus 145 g~~~~~~~~~~~~~~~~~y~~ii~~KT~~l~~~~~~~~ail~~~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~G 224 (325)
T 3aqb_B 145 GEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLG 224 (325)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHCC
T ss_conf 41899888607888999999999999999999999999997699756563599999999999983441320358865519
Q ss_pred C
Q ss_conf 7
Q gi|254781111|r 236 K 236 (237)
Q Consensus 236 k 236 (237)
|
T Consensus 225 K 225 (325)
T 3aqb_B 225 K 225 (325)
T ss_dssp S
T ss_pred C
T ss_conf 8