HHsearch results for GI: 254781111 and protein with PDBid: 3dyh_A
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=0 Score=347.51 Aligned_cols=193 Identities=23% Similarity=0.241 Sum_probs=160.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-----------------CCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 799999875058600799999999996178822-----------------224024688889999986477654453223
Q gi|254781111|r 38 RLLSAIRYALLGGKKIRSFLVTECASLFNVNHL-----------------TALRVGAAIECIHCYSLIHDDLPSMDNGYI 100 (237)
Q Consensus 38 ~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~-----------------~~~~~AaavEllH~asLihDDI~~~D~s~~ 100 (237)
.+.++++|++.||||+||++++++++++.+... .+..+|++||++|+|||||||| ||+|++
T Consensus 57 ~~~~~~~y~~~GGKr~Rp~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~la~~iEllH~asLihDDI--mD~s~~ 134 (390)
T 3dyh_A 57 YLRKMMDTTCLGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDI--MDNSVT 134 (390)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCE
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCC
T ss_conf 999999654688542023999999999716686643100000012456899999999999999999987103--579988
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH-----------
Q ss_conf 445566543243452013322223347999973102341267888887653222356641133222100-----------
Q gi|254781111|r 101 RRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD----------- 169 (237)
Q Consensus 101 RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~----------- 169 (237)
|||+||+|.+||++.||++||+|++.++..+.............+++..+++.. ..++.||.+|+.+
T Consensus 135 RRG~pt~h~~~g~~~ai~~gD~ll~~a~~~~~~~~~~~~~~~~~~il~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~ 212 (390)
T 3dyh_A 135 RRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVD--YTTAVGQLYDVTSMFDSNKLDPDV 212 (390)
T ss_dssp ETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH--HHHHHHHHHHHTTTSCGGGCCTTS
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 799975031367488899822999999999998523667156999999999999--999888886443010241234777
Q ss_pred --------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --------0000367999999986348-9999999999759888-999999999999849999986765344320
Q gi|254781111|r 170 --------EFIDETQVFMIQKMKTGAL-MCFACESGAIMAHASQ-NEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 170 --------~~~~~~~y~~i~~~KTa~l-f~~~~~~ga~lag~~~-~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
...|+++|++|+++|||+| |.+|+.+|++++|+.+ ...+.+.+||.++|++|||+|||||++||.
T Consensus 213 ~~~~~~~~~~~t~~~Y~~ii~~KTa~l~~~~~~~~g~~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~ 287 (390)
T 3dyh_A 213 SQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPP 287 (390)
T ss_dssp CCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 630223432179999999999776699999999998977051178899889888999999999999988700896