HHsearch results for GI: 254781111 and protein with PDBid: 3lmd_A
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
Probab=100.00 E-value=0 Score=358.88 Aligned_cols=212 Identities=25% Similarity=0.398 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCC-CCCCCCHHHHHH
Q ss_conf 348999999999999999999997675302457157999998750-586007999999999961788-222240246888
Q gi|254781111|r 3 GGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVN-HLTALRVGAAIE 80 (237)
Q Consensus 3 ~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~-~~~~~~~AaavE 80 (237)
..+++.+.+..++|++.+.+.+ .. ..+.+.++..|.+ .||||+||.|+++++++++++ .+.++++|+++|
T Consensus 34 ~~l~~~i~~~l~~ve~~l~~~l-------~~-~~~~l~~~~~~~~~~GGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiE 105 (360)
T 3lmd_A 34 PELTARINDAMVQVEELLHTEL-------SS-GEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVE 105 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------TC-SCHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------CC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 8999999999999999999882-------68-844799999998708961699999999999829993588999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999986477654453223445566543243452013322223347999973102341267888887653222356641
Q gi|254781111|r 81 CIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGML 160 (237)
Q Consensus 81 llH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (237)
++|+|||||||| ||+|++|||+||+|.+||+..||++||||++.+++++++.... .+..+.++ ...++
T Consensus 106 llH~asLiHDDI--~D~s~~RRG~pt~~~~~g~~~ail~GD~l~~~a~~~~~~~~~~--------~~~~~~~~--~~~~~ 173 (360)
T 3lmd_A 106 ITHLATLYHDDV--MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGTD--------TVAHFAET--FGELV 173 (360)
T ss_dssp HHHHHHHHHHHH--HC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHH--HHHHH
T ss_pred HHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCH--------HHHHHHHH--HHHHH
T ss_conf 999999995686--8899999998751333574253340648789999998602403--------55888887--68988
Q ss_pred CCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1332221000--0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r 161 GGQMLDIQDE--FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 161 ~GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
.||.+|+.+. ..+.++|++|+.+|||+||.++|.+|++++|++++..+.+.+||+++|++|||+||++|+++|.
T Consensus 174 ~GQ~~dl~~~~~~~~~e~y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~ 249 (360)
T 3lmd_A 174 TGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSET 249 (360)
T ss_dssp HHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 7778987465666879999999999999999999999999829899999999999999999999877865312885