HHsearch results for GI: 254781111 and protein with PDBid: 3n3d_A

>3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis}
Probab=100.00  E-value=0  Score=328.59  Aligned_cols=208  Identities=27%  Similarity=0.355  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999997675302457157999998750-5860079999999999617882-222402468888999998647765
Q gi|254781111|r   16 IDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNH-LTALRVGAAIECIHCYSLIHDDLP   93 (237)
Q Consensus        16 id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~-~~~~~~AaavEllH~asLihDDI~   93 (237)
                      |+..+..+.......+.. .++.+.++++|.+ .||||+||.+++++++++++.. +.+.++|+++|++|+|||||||| 
T Consensus        14 i~~~l~~v~~~l~~~~~~-~~~~l~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~A~aiEllH~asLIhDDI-   91 (335)
T 3n3d_A           14 VEPQLTALQDYLLRTVQL-DNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDV-   91 (335)
T ss_dssp             THHHHHHHHHHHHHHCCC-SCHHHHHHHHHHHHTCTTCHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf             999999999999987078-866899999999958985589999999998769997788999999999999999984675-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH---H
Q ss_conf             4453223445566543243452013322223347999973102341267888887653222356641133222100---0
Q gi|254781111|r   94 SMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD---E  170 (237)
Q Consensus        94 ~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~---~  170 (237)
                       ||+|++|||+||+|.+||++.|||+||+|++.+|+.+......  .....    .++.+.  ..++.||..++..   .
T Consensus        92 -~D~s~~RRg~p~~~~~~g~~~Ail~gd~l~~~a~~~~~~~~~~--~~~~~----~~~~~~--~~~~~g~~~~~~~~~~~  162 (335)
T 3n3d_A           92 -IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTD--RSLIQ----NHIDAM--HRILQGELHQMDLNYRE  162 (335)
T ss_dssp             -HTTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHH----HHHHHH--HHHHHHHHHHHHTTTCT
T ss_pred             -CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHH----HHHHHH--HHHHHHHHHHHHHCCCC
T ss_conf             -4799877885332000008899997539999999840000001--79999----999988--99987789998750277


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  171 FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       171 ~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      .+++++|+.++.+|||+||.++|.+|+++++++++....+.+||.++|++|||+||++|++||.
T Consensus       163 ~~~~~~y~~~i~~KT~~l~~~~~~~ga~~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~  226 (335)
T 3n3d_A          163 DITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDP  226 (335)
T ss_dssp             TCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             8899999999998688899999998774102425777999998777788988756765324887