HHsearch results for GI: 254781111 and protein with PDBid: 3nf2_A
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=0 Score=360.33 Aligned_cols=220 Identities=27% Similarity=0.363 Sum_probs=187.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC------------CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 98348999999999999999999997675302457157999998750------------586007999999999961788
Q gi|254781111|r 1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL------------LGGKKIRSFLVTECASLFNVN 68 (237)
Q Consensus 1 m~~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l------------~gGKr~R~~l~l~~~~~~~~~ 68 (237)
|+-.+.+.|.+.+..|+..|.+.+... ++.+.+++.|.+ .||||+||.|++++++++|++
T Consensus 1 ~~~d~~~~l~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~GGKr~Rp~l~l~~~~~~g~~ 72 (352)
T 3nf2_A 1 MSLDVTALLERGRTLATPVLRAAVDRL--------APPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAA 72 (352)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTS--------CTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 988899999999999999999998545--------824899999761012220472767897359999999999981988
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 22224024688889999986477654453223445566543243452013322223347999973102341267888887
Q gi|254781111|r 69 HLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLML 148 (237)
Q Consensus 69 ~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~ 148 (237)
++.++++|+++|++|+|||||||| ||+|++|||+||+|.+||++.|||+||+|++.+|+++++........ ...
T Consensus 73 ~~~~~~~A~aiEllH~asLIHDDi--~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~----~~~ 146 (352)
T 3nf2_A 73 PEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGR----ATR 146 (352)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HHH
T ss_conf 578999999999999999995877--67997779880603345879999972248999999998646531046----777
Q ss_pred HHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6532223566411332221000---0003679999999863489999999999759888999999999999849999986
Q gi|254781111|r 149 SLTHNIGLQGMLGGQMLDIQDE---FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLAD 225 (237)
Q Consensus 149 ~~~~~~~~~~l~~GQ~~dl~~~---~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~D 225 (237)
.+... ...++.||.+|+... ..++++|++|+.+|||+||.+||.+|+++++++++..+.+.+||.++|++|||+|
T Consensus 147 ~~~~~--~~~~~~gq~~d~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~~a~~~~~~~~~l~~~g~~lGiaFQi~D 224 (352)
T 3nf2_A 147 RLTKA--SRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVD 224 (352)
T ss_dssp HHHHH--HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67765--0312253069998776023569999999986789999999998775412659999999999999999998634
Q ss_pred HHHHHHHH---HCC
Q ss_conf 76534432---067
Q gi|254781111|r 226 DLLDCEED---LPK 236 (237)
Q Consensus 226 D~lD~~~D---~~k 236 (237)
|++|++|| .||
T Consensus 225 DilD~~~~~~~~GK 238 (352)
T 3nf2_A 225 DLLGIWGDPDATGK 238 (352)
T ss_dssp HHHHHHCCHHHHSS
T ss_pred HHHHCCCCHHHHCC
T ss_conf 34420388367598