HHsearch results for GI: 254781111 and protein with PDBid: 3nf2_A

>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00  E-value=0  Score=360.33  Aligned_cols=220  Identities=27%  Similarity=0.363  Sum_probs=187.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC------------CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             98348999999999999999999997675302457157999998750------------586007999999999961788
Q gi|254781111|r    1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL------------LGGKKIRSFLVTECASLFNVN   68 (237)
Q Consensus         1 m~~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l------------~gGKr~R~~l~l~~~~~~~~~   68 (237)
                      |+-.+.+.|.+.+..|+..|.+.+...        ++.+.+++.|.+            .||||+||.|++++++++|++
T Consensus         1 ~~~d~~~~l~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~GGKr~Rp~l~l~~~~~~g~~   72 (352)
T 3nf2_A            1 MSLDVTALLERGRTLATPVLRAAVDRL--------APPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAA   72 (352)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHTS--------CTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             988899999999999999999998545--------824899999761012220472767897359999999999981988


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             22224024688889999986477654453223445566543243452013322223347999973102341267888887
Q gi|254781111|r   69 HLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLML  148 (237)
Q Consensus        69 ~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~  148 (237)
                      ++.++++|+++|++|+||||||||  ||+|++|||+||+|.+||++.|||+||+|++.+|+++++........    ...
T Consensus        73 ~~~~~~~A~aiEllH~asLIHDDi--~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~----~~~  146 (352)
T 3nf2_A           73 PEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGR----ATR  146 (352)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHH----HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HHH
T ss_conf             578999999999999999995877--67997779880603345879999972248999999998646531046----777


Q ss_pred             HHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6532223566411332221000---0003679999999863489999999999759888999999999999849999986
Q gi|254781111|r  149 SLTHNIGLQGMLGGQMLDIQDE---FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLAD  225 (237)
Q Consensus       149 ~~~~~~~~~~l~~GQ~~dl~~~---~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~D  225 (237)
                      .+...  ...++.||.+|+...   ..++++|++|+.+|||+||.+||.+|+++++++++..+.+.+||.++|++|||+|
T Consensus       147 ~~~~~--~~~~~~gq~~d~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~~a~~~~~~~~~l~~~g~~lGiaFQi~D  224 (352)
T 3nf2_A          147 RLTKA--SRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVD  224 (352)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67765--0312253069998776023569999999986789999999998775412659999999999999999998634


Q ss_pred             HHHHHHHH---HCC
Q ss_conf             76534432---067
Q gi|254781111|r  226 DLLDCEED---LPK  236 (237)
Q Consensus       226 D~lD~~~D---~~k  236 (237)
                      |++|++||   .||
T Consensus       225 DilD~~~~~~~~GK  238 (352)
T 3nf2_A          225 DLLGIWGDPDATGK  238 (352)
T ss_dssp             HHHHHHCCHHHHSS
T ss_pred             HHHHCCCCHHHHCC
T ss_conf             34420388367598