HHsearch results for GI: 254781111 and protein with PDBid: 3npk_A
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=0 Score=365.25 Aligned_cols=198 Identities=36% Similarity=0.531 Sum_probs=175.1
Q ss_pred CCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7157999998750-5860079999999999617882-2224024688889999986477654453223445566543243
Q gi|254781111|r 35 HNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNH-LTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYD 112 (237)
Q Consensus 35 ~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~-~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G 112 (237)
.++.+.++++|.+ .||||+||.|+++++++++++. +.++++|+++|++|+||||||||||||+|++|||+||+|.+||
T Consensus 23 ~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiEllH~asLiHDDI~~mD~s~~RRG~pt~h~~~G 102 (291)
T 3npk_A 23 FHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYD 102 (291)
T ss_dssp SCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTC
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67479999999985898538799999999985997368999999999999999999728703468744589876434320
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 4520133222233479999731023412678888876532223566411332221000--00036799999998634899
Q gi|254781111|r 113 EVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE--FIDETQVFMIQKMKTGALMC 190 (237)
Q Consensus 113 ~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~ 190 (237)
++.||++||+|++.+|+++++..... ......+.....+.+..+++.||.+|+... ..++++|..|+.+|||+||.
T Consensus 103 ~~~Ail~Gd~L~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gq~~d~~~~~~~~~~~~y~~i~~~KTa~lf~ 180 (291)
T 3npk_A 103 ETTAILVGDALNTEAFLVLSHAHLKD--EIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIA 180 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCH--HHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 67999807298898988877640014--6889999999998899999988899998750578799999999998885898
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999759888999999999999849999986765344320
Q gi|254781111|r 191 FACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 191 ~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
+||.+||++++++++..+.+.+||.++|+||||+||++|++||.
T Consensus 181 ~~~~~ga~~~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~gd~ 224 (291)
T 3npk_A 181 AALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQ 224 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999847999999999989998888877379988633888