HHsearch results for GI: 254781111 and protein with PDBid: 3oyr_A
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=0 Score=353.82 Aligned_cols=205 Identities=27% Similarity=0.420 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999997675302457157999998750-5860079999999999617882222402468888999998647765445
Q gi|254781111|r 18 TILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMD 96 (237)
Q Consensus 18 ~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D 96 (237)
..+..+-......+.+. .+.+.++.+|.+ .||||+||.|+++++++++++.+.++++|+++|++|+|||||||| ||
T Consensus 33 ~d~~~v~~~i~~~l~s~-~~~i~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi--~D 109 (345)
T 3oyr_A 33 ADMAGVNRLITDRMQSD-VAIIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDV--VD 109 (345)
T ss_dssp HHHHHHHHHHHHHTCCS-STHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTT--C-
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CC
T ss_conf 99999999999987688-2779999999874898517399999999981998789999999999999999986877--78
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH---HHH
Q ss_conf 32234455665432434520133222233479999731023412678888876532223566411332221000---000
Q gi|254781111|r 97 NGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE---FID 173 (237)
Q Consensus 97 ~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~---~~~ 173 (237)
+|++|||+||+|.+||+..||++||||++.+|+.+++..... .+..+++. ...+++||.++.... .++
T Consensus 110 ~~~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~-------~~~~~~~~--~~~~~~G~~~~~~~~~~~~~~ 180 (345)
T 3oyr_A 110 GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMK-------ALEILARA--SRVIAEGEVLQLMRSHDLNLS 180 (345)
T ss_dssp --------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHH--HHHHHHHHHHHHHTSSCSSCC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH-------HHHHHHHH--HHHHHCCHHHHHHHHCCCCCC
T ss_conf 875667998857366842888999999999887544111068-------89999999--999973106887762277766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r 174 ETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237)
Q Consensus 174 ~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237)
+++|++|+.+|||+||.++|.+|+++++++++..+.+.+||.++|++|||+||++|++||.
T Consensus 181 ~~~yl~ii~~KTa~L~~~~~~~ga~~~~~~~~~~~~l~~~G~~lG~AFQI~DDllD~~~~~ 241 (345)
T 3oyr_A 181 QAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGAT 241 (345)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 8999999999874899999987998837999999999988899999999987654134346