Query gi|254781111|ref|YP_003065524.1| geranyltranstransferase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 237 No_of_seqs 116 out of 4447 Neff 7.4 Searched_HMMs 23785 Date Wed Jun 1 00:56:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781111.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2h8o_A Geranyltranstransferase 100.0 0 0 396.3 16.8 232 3-234 37-271 (335) 2 1rqj_A Geranyltranstransferase 100.0 0 0 375.4 16.9 229 4-237 2-238 (299) 3 3p8l_A Geranyltranstransferase 100.0 0 0 372.4 16.9 224 3-234 8-235 (302) 4 3pde_A Farnesyl-diphosphate sy 100.0 0 0 370.0 15.8 226 1-234 4-234 (309) 5 1wy0_A Geranylgeranyl pyrophos 100.0 0 0 366.2 17.2 220 9-234 4-227 (342) 6 2j1p_A Geranylgeranyl pyrophos 100.0 0 0 363.1 18.5 220 8-234 16-242 (293) 7 3npk_A Geranyltranstransferase 100.0 0 0 365.2 15.2 198 35-234 23-224 (291) 8 3nf2_A Putative polyprenyl syn 100.0 0 0 360.3 17.1 220 1-236 1-238 (352) 9 1rtr_A Geranyltranstransferase 100.0 0 0 361.9 15.7 218 10-234 7-227 (301) 10 3p8r_A Geranyltranstransferase 100.0 0 0 362.8 14.6 223 7-234 11-238 (302) 11 3lsn_A Geranyltranstransferase 100.0 0 0 359.6 17.4 228 4-236 2-237 (304) 12 3kra_B Geranyl diphosphate syn 100.0 0 0 357.4 19.2 215 7-229 3-223 (274) 13 3lmd_A Geranylgeranyl pyrophos 100.0 0 0 358.9 17.3 212 3-234 34-249 (360) 14 3mzv_A Decaprenyl diphosphate 100.0 0 0 357.7 17.3 212 5-234 14-229 (341) 15 2e8v_A Geranylgeranyl pyrophos 100.0 0 0 364.0 11.0 213 14-234 4-223 (340) 16 3ipi_A Geranyltranstransferase 100.0 0 0 356.8 16.5 202 14-234 12-216 (295) 17 2azj_A Geranylgeranyl pyrophos 100.0 0 0 356.9 16.2 208 4-234 10-217 (289) 18 3oyr_A Trans-isoprenyl diphosp 100.0 0 0 353.8 18.6 205 18-234 33-241 (345) 19 3m0g_A Farnesyl diphosphate sy 100.0 0 0 357.1 15.4 220 4-234 2-225 (297) 20 3lom_A Geranyltranstransferase 100.0 0 0 351.1 17.6 225 5-234 9-239 (313) 21 3dyh_A Farnesyl pyrophosphate 100.0 0 0 347.5 17.2 193 38-234 57-287 (390) 22 1uby_A FPS, farnesyl diphospha 100.0 0 0 344.2 19.5 192 37-234 57-266 (367) 23 2ihi_A Pyrophosphate synthase; 100.0 0 0 353.5 10.9 190 39-234 68-295 (395) 24 2ftz_A Geranyltranstransferase 100.0 0 0 350.0 13.8 207 11-236 13-227 (284) 25 2qis_A Farnesyl pyrophosphate 100.0 0 0 342.5 18.2 220 9-234 31-273 (374) 26 1yhl_A Farnesyl pyrophosphate 100.0 0 0 344.1 15.4 195 36-234 33-259 (362) 27 2her_A Fragment, farnesyl pyro 100.0 0 0 355.9 4.6 192 38-233 59-262 (368) 28 3lk5_A Geranylgeranyl pyrophos 100.0 0 0 340.4 15.3 223 8-236 17-271 (380) 29 3aqb_B Component B of hexapren 100.0 0 0 339.7 15.3 215 3-236 4-225 (325) 30 3llw_A Geranyltranstransferase 100.0 0 0 336.8 16.7 229 1-234 1-239 (311) 31 1v4e_A Octoprenyl-diphosphate 100.0 0 0 340.4 12.8 183 41-237 30-218 (299) 32 2q80_A Geranylgeranyl pyrophos 100.0 0 0 342.5 9.4 185 35-234 9-198 (301) 33 1wmw_A Geranylgeranyl diphosph 100.0 0 0 332.6 14.4 190 37-234 25-221 (330) 34 3n3d_A Geranylgeranyl pyrophos 100.0 0 0 328.6 11.9 208 16-234 14-226 (335) 35 1ezf_A Farnesyl-diphosphate fa 93.2 0.37 1.6E-05 24.8 8.4 75 159-234 120-194 (340) 36 2zco_A Dehydrosqualene synthas 93.1 0.28 1.2E-05 25.5 6.8 72 158-235 112-184 (293) 37 3kb9_A EPI-isozizaene synthase 70.3 4.7 0.0002 18.3 6.5 74 160-233 190-269 (382) 38 2htj_A P fimbrial regulatory p 47.6 4.4 0.00019 18.5 0.7 22 95-116 44-65 (81) 39 1ps1_A Pentalenene synthase; a 45.6 13 0.00054 15.7 8.5 74 160-233 147-227 (337) 40 3bny_A Aristolochene synthase; 32.3 21 0.00089 14.5 7.8 63 169-231 163-225 (320) 41 2wlv_A GAG polyprotein, HIV-2 28.8 24 0.001 14.1 3.8 55 173-229 18-73 (144) 42 3l9p_A Anaplastic lymphoma kin 23.6 13 0.00056 15.7 -0.1 22 72-93 187-208 (367) 43 2h8h_A Proto-oncogene tyrosine 22.8 14 0.0006 15.5 -0.1 23 71-93 368-390 (535) 44 3eiq_C Programmed cell death p 21.5 33 0.0014 13.3 5.2 56 10-65 51-116 (358) 45 2pwo_A GAG-POL polyprotein (PR 21.0 34 0.0014 13.2 3.1 55 173-229 19-74 (146) 46 1fmk_A C-SRC, P60-SRC, tyrosin 20.6 15 0.00062 15.4 -0.3 23 71-93 285-307 (452) 47 3dzo_A Rhoptry kinase domain; 20.6 17 0.00073 15.0 0.0 28 72-100 217-244 (413) 48 3kfa_A V-ABL, tyrosine-protein 20.2 24 0.00099 14.2 0.6 26 72-98 117-142 (288) 49 2i1m_A Macrophage colony-stimu 20.2 19 0.0008 14.7 0.2 22 72-93 170-191 (333) 50 3gen_A Tyrosine-protein kinase 20.2 21 0.00089 14.5 0.4 22 72-93 126-147 (283) No 1 >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} Probab=100.00 E-value=0 Score=396.31 Aligned_cols=232 Identities=47% Similarity=0.799 Sum_probs=208.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 348999999999999999999997675302457157999998750-5860079999999999617882222402468888 Q gi|254781111|r 3 GGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIEC 81 (237) Q Consensus 3 ~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEl 81 (237) .+++.++++..++||+.|++++...........|+.+.++|+|.+ .||||+||.|++++++++|++.+.++++|+|+|+ T Consensus 37 ~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~~~p~~l~~a~~y~~~~GGKrlRp~L~l~~~~~~g~~~~~~~~~AaaiEl 116 (335) T 2h8o_A 37 TNFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALEC 116 (335) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 67999999999999999998667523444457987899999998626841099999999999829987899999999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999864776544532234455665432434520133222233479999731023412678888876532223566411 Q gi|254781111|r 82 IHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLG 161 (237) Q Consensus 82 lH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (237) +|++||||||||+||+|++|||+||+|++||++.|||+||+|++.+|+++++.............+..+.+..+..+++. T Consensus 117 iH~aSLIHDDI~~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~i~~l~~~~~~~g~~~ 196 (335) T 2h8o_A 117 LHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAG 196 (335) T ss_dssp HHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999997798768876333898650305185999999999999888998851220467888999999999999988864 Q ss_pred CCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 33222100--00003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 162 GQMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 162 GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) ||..+... ...+++.|.+|+++|||+||.++|.+|+++++++++..+.+.+||.++|++|||+||++|++||. T Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~KTg~L~~~a~~~ga~l~~~~~~~~~~l~~~g~~lGlAFQI~DDilD~~gd~ 271 (335) T 2h8o_A 197 GQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA 271 (335) T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--- T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 688887630454248999876202477989989998898804616799999999986302677555766511898 No 2 >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Probab=100.00 E-value=0 Score=375.42 Aligned_cols=229 Identities=37% Similarity=0.614 Sum_probs=197.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 48999999999999999999997675302457157999998750-58600799999999996178822224024688889 Q gi|254781111|r 4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECI 82 (237) Q Consensus 4 ~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEll 82 (237) .|++++++..++|++.+++++... ....+.+.++++|.+ .||||+||.|++++++++|++.+.++++|+++|++ T Consensus 2 ~~~~~l~~~~~~i~~~l~~~~~~~-----~~~~~~l~e~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEll 76 (299) T 1rqj_A 2 DFPQQLEACVKQANQALSRFIAPL-----PFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECI 76 (299) T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTS-----SSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 849999999999999999987626-----788807999999987179751889999999988099867899999999999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999864776544532234455665432434520133222233479999731023-412678888876532223566411 Q gi|254781111|r 83 HCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQ-LKDNIRSQLMLSLTHNIGLQGMLG 161 (237) Q Consensus 83 H~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 161 (237) |+||||||||+++|+|++|||+||+|.+||++.|||+||+|++.+++++++.... .........+..+..+.+..+++. T Consensus 77 H~asLIhDDI~D~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (299) T 1rqj_A 77 HAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCG 156 (299) T ss_dssp HHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999980560245221003698501131620666651177889999998578953337899999999999875999999 Q ss_pred CCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C Q ss_conf 332221000--000367999999986348999999999975988-8999999999999849999986765344320---6 Q gi|254781111|r 162 GQMLDIQDE--FIDETQVFMIQKMKTGALMCFACESGAIMAHAS-QNEKERLRCFGENLGIIFQLADDLLDCEEDL---P 235 (237) Q Consensus 162 GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~-~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~ 235 (237) ||.+|+.+. .+++++|++|+++|||+||.+++.+|+++++.. ++..+.+.+||.++|++|||+||++|++||. | T Consensus 157 GQ~lDl~~~~~~~~~~~y~~i~~~KTa~l~~~~~~~~a~~~~~~~~~~~~~~~~~g~~lG~afQi~DD~lD~~~~~~~~G 236 (299) T 1rqj_A 157 GQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLG 236 (299) T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHC T ss_conf 99999981178999999999999999999999999889984540568999999988999999985108776228886609 Q ss_pred CC Q ss_conf 79 Q gi|254781111|r 236 KK 237 (237) Q Consensus 236 k~ 237 (237) |. T Consensus 237 K~ 238 (299) T 1rqj_A 237 KR 238 (299) T ss_dssp SC T ss_pred CC T ss_conf 96 No 3 >3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Probab=100.00 E-value=0 Score=372.35 Aligned_cols=224 Identities=37% Similarity=0.574 Sum_probs=197.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCC-CCCCHHHHHH Q ss_conf 348999999999999999999997675302457157999998750-58600799999999996178822-2240246888 Q gi|254781111|r 3 GGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHL-TALRVGAAIE 80 (237) Q Consensus 3 ~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~-~~~~~AaavE 80 (237) .+|.+.+++....|++.|++++.+. ..++.+.+++.|.+ .||||+||.|++++++++|++.+ .++++|++|| T Consensus 8 ~~~~~~~~~~~~~v~~~l~~~~~~~------~~~~~l~~~~~y~l~~gGKr~Rp~L~l~~~~~~g~~~~~~~~~~A~avE 81 (302) T 3p8l_A 8 HSLTNFSQQHLPLVEKVMVDFIAEY------TENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLE 81 (302) T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHS------CCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 2199999999999999999998734------8877899999988708963086999999999839995177899999999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999986477654453223445566543243452013322223347999973102341267888887653222356641 Q gi|254781111|r 81 CIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGML 160 (237) Q Consensus 81 llH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (237) ++|+||||||||+++|+|++|||+||+|.+||++.||++||+|++.+|++++.... ......+.+..++++.+.++++ T Consensus 82 llH~asLIHDDI~d~D~~~~RRg~pt~~~~~G~~~Ail~GD~l~~~a~~ll~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 159 (302) T 3p8l_A 82 MIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQL--GLSEKVLLMQQLAKAAGNQGMV 159 (302) T ss_dssp HHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSC--CHHHHHHHHHHHHHHHSTTTHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999788613577754356886010248899998114879999999987037--8179999999999998899999 Q ss_pred CCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 133222100--00003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 161 GGQMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 161 ~GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) .||.+|+.. ..+++++|++|+++|||+||.+||.+|+++++++++..+.+.+||.++|++|||+||++|++||. T Consensus 160 ~Gq~~d~~~~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~~~ 235 (302) T 3p8l_A 160 SGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTE 235 (302) T ss_dssp HHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-- T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 9989998700457989999999997799999999973130048857889999999999888864159878534898 No 4 >3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Probab=100.00 E-value=0 Score=369.96 Aligned_cols=226 Identities=32% Similarity=0.541 Sum_probs=193.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCC--CCCCCCHHH Q ss_conf 98348999999999999999999997675302457157999998750-586007999999999961788--222240246 Q gi|254781111|r 1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVN--HLTALRVGA 77 (237) Q Consensus 1 m~~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~--~~~~~~~Aa 77 (237) |+..+.+..+++.++|++.|++.+.. ...+..+.++++|.+ .||||+||.|++++++++|++ ++.++++|+ T Consensus 4 ~~~~l~~f~~~~~~~i~~~l~~~l~~------~~~~~~l~~a~~y~l~~GGKriRp~L~l~~~~~~g~~~~~~~~~~~A~ 77 (309) T 3pde_A 4 INARLIAFEDQWVPALNAPLKQAILA------DSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVM 77 (309) T ss_dssp EEHHHHHHHHHHHHHHHTTHHHHHHH------TCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 67999999999999999999998751------699678999999887179440869999999998099977188999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 88889999986477654453223445566543243452013322223347999973102341267888887653222356 Q gi|254781111|r 78 AIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQ 157 (237) Q Consensus 78 avEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (237) |+|++|++||||||||+||+|++|||+||+|++||++.||++||+|++.+|+++++... +.......+..+..+.+.. T Consensus 78 avEllH~asLIHDDI~~~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~--~~~~~~~~~~~l~~~~~~~ 155 (309) T 3pde_A 78 ALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDL--PATMQAALVQALATAAGPS 155 (309) T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHHHHHSTT T ss_pred HHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHH T ss_conf 99999999999858050366555577777134416099998888888789999975010--1377889999999999999 Q ss_pred HHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 641133222100--00003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 158 GMLGGQMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 158 ~l~~GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) ++..||..|... ..+++++|..|+++|||+||.++|.+|++++|++++..+.+.+||.++|++|||+||++|++||. T Consensus 156 ~~~~~~~~d~~~~~~~~~~~~y~~i~~~KTa~l~~~~~~~ga~l~~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~ 234 (309) T 3pde_A 156 GMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSP 234 (309) T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC- T ss_pred HHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 9984520111001011139999999998888888999999999816618889999987776566788589887623897 No 5 >1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3} Probab=100.00 E-value=0 Score=366.22 Aligned_cols=220 Identities=30% Similarity=0.407 Sum_probs=185.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 999999999999999997675302457157999998750-5860079999999999617882222402468888999998 Q gi|254781111|r 9 LQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSL 87 (237) Q Consensus 9 l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asL 87 (237) +.+..+++++.++.+-......++...++.+.++++|.+ +||||+||.|++++++++|++++.++++|+++|++|+||| T Consensus 4 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asL 83 (342) T 1wy0_A 4 YEELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSL 83 (342) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999999999864767828999999988646745489999999999839986889999999999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 64776544532234455665432434520133222233479999731023412678888876532223566411332221 Q gi|254781111|r 88 IHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDI 167 (237) Q Consensus 88 ihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl 167 (237) ||||| +|+|++|||+||+|.+||++.||++||+|++.+|+++++... ........+..++.+ ...++.||.+|+ T Consensus 84 IHDDi--~D~~~~RRg~~t~~~~~g~~~ail~Gd~l~~~a~~~l~~~~~--~~~~~~~~~~~~~~~--~~~~~~Gq~~dl 157 (342) T 1wy0_A 84 VHDDI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEI--PPEKKARVLEVIVKA--SNELCEGQARDL 157 (342) T ss_dssp HHHHH--HHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCS--CHHHHHHHHHHHHHH--HHHHHHHHHHHH T ss_pred HCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH--HHHHHHHHHHHH T ss_conf 85887--768987689988531005789988899999999999986047--746667889988678--889876265665 Q ss_pred CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0000---003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 168 QDEF---IDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 168 ~~~~---~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) .+.. .++++|++|+.+|||+||.+||.+|++++|++++..+.+.+||.++|++|||+||++|++||. T Consensus 158 ~~~~~~~~~~~~y~~ii~~KTa~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~ 227 (342) T 1wy0_A 158 EFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADE 227 (342) T ss_dssp HHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 4014689999999999999999999999999999839999999999999999999999855641023887 No 6 >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* Probab=100.00 E-value=0 Score=363.05 Aligned_cols=220 Identities=34% Similarity=0.561 Sum_probs=190.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 9999999999999999997675302457157999998750-586007999999999961788222240246888899999 Q gi|254781111|r 8 KLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYS 86 (237) Q Consensus 8 ~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~as 86 (237) .+.+..+.|++.|++. ++...|..+.++++|.+ .||||+||.|++++++++|++++.++++|+++|++|++| T Consensus 16 ~~~~~~~~v~~~l~~~-------~~~~~p~~l~~~~~y~~~~GGKrlRp~L~~~~~~~~g~~~~~~~~~a~aiEllH~as 88 (293) T 2j1p_A 16 YIIRKADSVNKALDSA-------VPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMS 88 (293) T ss_dssp HHHHHHHHHHHHHHHH-------SCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999975-------576785679999998983787528899999999980998788999999999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 864776544532234455665432434520133222233479999731023-4126788888765322235664113322 Q gi|254781111|r 87 LIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQ-LKDNIRSQLMLSLTHNIGLQGMLGGQML 165 (237) Q Consensus 87 LihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~GQ~~ 165 (237) ||||||+++|+|++|||+||+|++||++.||++||+|+++++++++..... .........+..+++..+..+++.||.. T Consensus 89 LIHDDI~d~D~s~~RRG~pt~h~~~g~~~Ail~GD~l~~~a~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 168 (293) T 2j1p_A 89 LIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVV 168 (293) T ss_dssp HHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHH T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98827744678887787265888728404356432899999999876135545789999999999999999999999999 Q ss_pred CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2100-----00003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 166 DIQD-----EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 166 dl~~-----~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) ++.. ...+++.|..|+.+|||+||.++|.+||+++|++++..+.+.+||.++|+||||+||++|++||. T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~KTa~l~~~~~~~gaila~~~~~~~~~l~~~G~~lGiAFQI~DDilD~~~d~ 242 (293) T 2j1p_A 169 DISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS 242 (293) T ss_dssp TTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-- T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC T ss_conf 88764113456789999999999889999999999897729999999999999857003443340444410697 No 7 >3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Probab=100.00 E-value=0 Score=365.25 Aligned_cols=198 Identities=36% Similarity=0.531 Sum_probs=175.1 Q ss_pred CCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 7157999998750-5860079999999999617882-2224024688889999986477654453223445566543243 Q gi|254781111|r 35 HNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNH-LTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYD 112 (237) Q Consensus 35 ~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~-~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G 112 (237) .++.+.++++|.+ .||||+||.|+++++++++++. +.++++|+++|++|+||||||||||||+|++|||+||+|.+|| T Consensus 23 ~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiEllH~asLiHDDI~~mD~s~~RRG~pt~h~~~G 102 (291) T 3npk_A 23 FHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYD 102 (291) T ss_dssp SCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTC T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 67479999999985898538799999999985997368999999999999999999728703468744589876434320 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHH Q ss_conf 4520133222233479999731023412678888876532223566411332221000--00036799999998634899 Q gi|254781111|r 113 EVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE--FIDETQVFMIQKMKTGALMC 190 (237) Q Consensus 113 ~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~ 190 (237) ++.||++||+|++.+|+++++..... ......+.....+.+..+++.||.+|+... ..++++|..|+.+|||+||. T Consensus 103 ~~~Ail~Gd~L~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gq~~d~~~~~~~~~~~~y~~i~~~KTa~lf~ 180 (291) T 3npk_A 103 ETTAILVGDALNTEAFLVLSHAHLKD--EIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIA 180 (291) T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCH--HHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 67999807298898988877640014--6889999999998899999988899998750578799999999998885898 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999759888999999999999849999986765344320 Q gi|254781111|r 191 FACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 191 ~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) +||.+||++++++++..+.+.+||.++|+||||+||++|++||. T Consensus 181 ~~~~~ga~~~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~gd~ 224 (291) T 3npk_A 181 AALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQ 224 (291) T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--- T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 99999999847999999999989998888877379988633888 No 8 >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Probab=100.00 E-value=0 Score=360.33 Aligned_cols=220 Identities=27% Similarity=0.363 Sum_probs=187.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC------------CCCCHHHHHHHHHHHHHCCCC Q ss_conf 98348999999999999999999997675302457157999998750------------586007999999999961788 Q gi|254781111|r 1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL------------LGGKKIRSFLVTECASLFNVN 68 (237) Q Consensus 1 m~~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l------------~gGKr~R~~l~l~~~~~~~~~ 68 (237) |+-.+.+.|.+.+..|+..|.+.+... ++.+.+++.|.+ .||||+||.|++++++++|++ T Consensus 1 ~~~d~~~~l~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~GGKr~Rp~l~l~~~~~~g~~ 72 (352) T 3nf2_A 1 MSLDVTALLERGRTLATPVLRAAVDRL--------APPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAA 72 (352) T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTS--------CTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 988899999999999999999998545--------824899999761012220472767897359999999999981988 Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 22224024688889999986477654453223445566543243452013322223347999973102341267888887 Q gi|254781111|r 69 HLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLML 148 (237) Q Consensus 69 ~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~ 148 (237) ++.++++|+++|++|+|||||||| ||+|++|||+||+|.+||++.|||+||+|++.+|+++++........ ... T Consensus 73 ~~~~~~~A~aiEllH~asLIHDDi--~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~----~~~ 146 (352) T 3nf2_A 73 PEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGR----ATR 146 (352) T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHH----HHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HHH T ss_conf 578999999999999999995877--67997779880603345879999972248999999998646531046----777 Q ss_pred HHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6532223566411332221000---0003679999999863489999999999759888999999999999849999986 Q gi|254781111|r 149 SLTHNIGLQGMLGGQMLDIQDE---FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLAD 225 (237) Q Consensus 149 ~~~~~~~~~~l~~GQ~~dl~~~---~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~D 225 (237) .+... ...++.||.+|+... ..++++|++|+.+|||+||.+||.+|+++++++++..+.+.+||.++|++|||+| T Consensus 147 ~~~~~--~~~~~~gq~~d~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~~a~~~~~~~~~l~~~g~~lGiaFQi~D 224 (352) T 3nf2_A 147 RLTKA--SRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVD 224 (352) T ss_dssp HHHHH--HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHH--HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 67765--0312253069998776023569999999986789999999998775412659999999999999999998634 Q ss_pred HHHHHHHH---HCC Q ss_conf 76534432---067 Q gi|254781111|r 226 DLLDCEED---LPK 236 (237) Q Consensus 226 D~lD~~~D---~~k 236 (237) |++|++|| .|| T Consensus 225 DilD~~~~~~~~GK 238 (352) T 3nf2_A 225 DLLGIWGDPDATGK 238 (352) T ss_dssp HHHHHHCCHHHHSS T ss_pred HHHHCCCCHHHHCC T ss_conf 34420388367598 No 9 >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Probab=100.00 E-value=0 Score=361.87 Aligned_cols=218 Identities=41% Similarity=0.606 Sum_probs=183.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 99999999999999997675302457157999998750-58600799999999996178822224024688889999986 Q gi|254781111|r 10 QENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLI 88 (237) Q Consensus 10 ~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLi 88 (237) .+..++|++.|+..+.+ ...++.+.++++|.+ .||||+||.|++++++++|++.+.++++|+++|++|+|||| T Consensus 7 ~~~~~~i~~~l~~~~~~------~~~~~~l~~~~~y~l~~GGKr~Rp~L~l~~~~~~~~~~~~~~~~A~aiEllH~asLI 80 (301) T 1rtr_A 7 NKLIDEVNNELSVAINK------SVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLI 80 (301) T ss_dssp HHHHHHHHHHHHTSSCC------CSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999998611------358878999999887399747869999999988499758899999999999999999 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 47765445322344556654324345201332222334799997310234126788888765322235664113322210 Q gi|254781111|r 89 HDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQ 168 (237) Q Consensus 89 hDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~ 168 (237) ||||+++|+++.|||+||+|.+||++.||++||+|++.+|++++....... .........+..+.+..+++.||.+|+. T Consensus 81 hDDI~D~d~~~~RRg~~~~~~~~g~~~ail~gd~l~~~a~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~GQ~lDl~ 159 (301) T 1rtr_A 81 HDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTD-EVKIKVLQRLSIASGHVGMVGGQMLDMQ 159 (301) T ss_dssp HHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCH-HHHHHHHHHHHHHHSTTTHHHHHHHHHH T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 727733587742245654788752131265377178899999985343027-8999999999998659999876999998 Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 00--0003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 169 DE--FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 169 ~~--~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) .. ..+++.|..|+++|||+||.+|+.+|+++++++++..+.+.+||.++|++|||+||++|++||. T Consensus 160 ~~~~~~~~~~y~~i~~~KT~~l~~~~~~~ga~l~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~ 227 (301) T 1rtr_A 160 SEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227 (301) T ss_dssp TTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCH T ss_conf 24899999999999999999999999999998715737779999999987221012230887734888 No 10 >3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Probab=100.00 E-value=0 Score=362.81 Aligned_cols=223 Identities=38% Similarity=0.584 Sum_probs=186.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH Q ss_conf 99999999999999999997675302457157999998750-58600799999999996178822224024688889999 Q gi|254781111|r 7 SKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCY 85 (237) Q Consensus 7 ~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~a 85 (237) +.|+++++++++.+++++... + .....+.++++|.+ .||||+||.|++++++++|++.+.+.++|+|||++|+| T Consensus 11 e~l~~~~~~~~~~l~~~l~~~----~-~~~~~l~ea~~y~l~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH~a 85 (302) T 3p8r_A 11 EALSSYQQRNNQQLDQWLNRI----P-FQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAY 85 (302) T ss_dssp THHHHHHHHHHHHHHHHHHTC----S-CTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 999999999999999998627----8-99853999999885288004999999999998099846668999999999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9864776544532234455665432434520133222233479999731023412-678888876532223566411332 Q gi|254781111|r 86 SLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKD-NIRSQLMLSLTHNIGLQGMLGGQM 164 (237) Q Consensus 86 sLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~GQ~ 164 (237) |||||||+++|+|++|||+||+|.+||++.|||+||+|++.+|+++++....... .........+....+..+++.||. T Consensus 86 sLIHDDi~D~d~~~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (302) T 3p8r_A 86 SLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQA 165 (302) T ss_dssp HHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHH T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99841673456321015888610024839999997899988999987336542117889999999999999999999999 Q ss_pred CCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 22100--000036799999998634899999999997598-88999999999999849999986765344320 Q gi|254781111|r 165 LDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHA-SQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 165 ~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~-~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) .+... +.+++++|..|+.+|||+||.++|.+|+++++. +++..+.+.+||+++|++|||+||++|++||. T Consensus 166 ~~~~~~~~~~s~~~y~~~~~~KT~~l~~~~~~~~~~l~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~g~~ 238 (302) T 3p8r_A 166 LDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDT 238 (302) T ss_dssp HHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC- T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 9862236789999999999999989999999988875057756789999998899886788975876602886 No 11 >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* Probab=100.00 E-value=0 Score=359.62 Aligned_cols=228 Identities=34% Similarity=0.578 Sum_probs=183.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 48999999999999999999997675302457157999998750-58600799999999996178822224024688889 Q gi|254781111|r 4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECI 82 (237) Q Consensus 4 ~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEll 82 (237) .+++.+.....+||..+++++... ....+.+.++++|.+ .||||+||.|++++++++|++++.++++|+++|++ T Consensus 2 ~l~~~~~~~~~~id~~l~~~~~~~-----~~~~~~l~e~~~y~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~aiEll 76 (304) T 3lsn_A 2 SLTAYQASSQARVDAAMHTLFTAP-----SPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELI 76 (304) T ss_dssp CHHHHHHHHHHHHHHHHHGGGCCS-----SGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 868999999999999999860558-----973578999999884498205999999999998499989999999999999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999986477654453223445566543243452013322223347999973102341-2678888876532223566411 Q gi|254781111|r 83 HCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLK-DNIRSQLMLSLTHNIGLQGMLG 161 (237) Q Consensus 83 H~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 161 (237) |+||||||||+++|+|++|||+||+|.+||++.|||+||+|++.+|+++.+...... ...............+..++.. T Consensus 77 H~asLiHDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 156 (304) T 3lsn_A 77 HAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVG 156 (304) T ss_dssp HHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHH T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999961775567777789877754444519999987999997999850423220179999998789999988999987 Q ss_pred CCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C Q ss_conf 33222100--00003679999999863489999999999759-888999999999999849999986765344320---6 Q gi|254781111|r 162 GQMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAH-ASQNEKERLRCFGENLGIIFQLADDLLDCEEDL---P 235 (237) Q Consensus 162 GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~ 235 (237) +|..+... ...++++|.+|++.|||+||.++|.+|+++++ .+++..+.+.+||.++|++|||+||++|++||. | T Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~~~KT~~l~~~~~~~~~~~a~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~g~~~~~G 236 (304) T 3lsn_A 157 GQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLG 236 (304) T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC T ss_conf 68888752102455699999999998999999999999985654067999999999999999999999876228965519 Q ss_pred C Q ss_conf 7 Q gi|254781111|r 236 K 236 (237) Q Consensus 236 k 236 (237) | T Consensus 237 K 237 (304) T 3lsn_A 237 K 237 (304) T ss_dssp - T ss_pred C T ss_conf 8 No 12 >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* Probab=100.00 E-value=0 Score=357.41 Aligned_cols=215 Identities=18% Similarity=0.308 Sum_probs=182.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH Q ss_conf 99999999999999999997675302457157999998750-58600799999999996178822224024688889999 Q gi|254781111|r 7 SKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCY 85 (237) Q Consensus 7 ~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~a 85 (237) ..++.....|++.|++. ++...|..+.++++|.+ .||||+||.|++++|+++|++++.++++|+++|++|+| T Consensus 3 ~y~~~i~~~i~~~l~~~-------~~~~~~~~l~~~~~~~~~~gGKr~Rp~L~l~~~~~~gg~~~~~l~~AaaiEliH~a 75 (274) T 3kra_B 3 PYWAAIEADIERYLKKS-------ITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAA 75 (274) T ss_dssp HHHHHHHHHHHHHHHHH-------CCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 89999999999999976-------57689588999999998478862999999999999397999998999999999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 98647765445322344556654324345201332222334799997310234---126788888765322235664113 Q gi|254781111|r 86 SLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQL---KDNIRSQLMLSLTHNIGLQGMLGG 162 (237) Q Consensus 86 sLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~G 162 (237) |||||||+ +|++++|||+||+|.+||++.|||+||+|++.+|+++++..... ......+.+..++++++..+++.| T Consensus 76 sLIHDDI~-ddd~~~RRG~pt~h~~~G~~~AIl~GD~L~~~af~~la~~~~~~~~~~~~~~~~~i~~ls~~~~~~g~~~G 154 (274) T 3kra_B 76 AYVHEHLP-LTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISG 154 (274) T ss_dssp HHHHHTCC-CSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHH T ss_pred HHHHCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99981776-56532248999855564839999999999988999998558841024589999999999987768888712 Q ss_pred CCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3222100--000036799999998634899999999997598889999999999998499999867653 Q gi|254781111|r 163 QMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLD 229 (237) Q Consensus 163 Q~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD 229 (237) |.+|+.. ..++++.|..|+++|||+||++||++|++++|++++.++.+++||+++|++|||.||..+ T Consensus 155 q~~d~~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~gailag~~~~~~~~l~~~G~~lGi~~qi~dd~~a 223 (274) T 3kra_B 155 LHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNS 223 (274) T ss_dssp HHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTT T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 589988406777789999999864539999999999998193999999999999995887322466535 No 13 >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} Probab=100.00 E-value=0 Score=358.88 Aligned_cols=212 Identities=25% Similarity=0.398 Sum_probs=180.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCC-CCCCCCHHHHHH Q ss_conf 348999999999999999999997675302457157999998750-586007999999999961788-222240246888 Q gi|254781111|r 3 GGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVN-HLTALRVGAAIE 80 (237) Q Consensus 3 ~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~-~~~~~~~AaavE 80 (237) ..+++.+.+..++|++.+.+.+ .. ..+.+.++..|.+ .||||+||.|+++++++++++ .+.++++|+++| T Consensus 34 ~~l~~~i~~~l~~ve~~l~~~l-------~~-~~~~l~~~~~~~~~~GGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiE 105 (360) T 3lmd_A 34 PELTARINDAMVQVEELLHTEL-------SS-GEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVE 105 (360) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------TC-SCHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------CC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 8999999999999999999882-------68-844799999998708961699999999999829993588999999999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999986477654453223445566543243452013322223347999973102341267888887653222356641 Q gi|254781111|r 81 CIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGML 160 (237) Q Consensus 81 llH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (237) ++|+|||||||| ||+|++|||+||+|.+||+..||++||||++.+++++++.... .+..+.++ ...++ T Consensus 106 llH~asLiHDDI--~D~s~~RRG~pt~~~~~g~~~ail~GD~l~~~a~~~~~~~~~~--------~~~~~~~~--~~~~~ 173 (360) T 3lmd_A 106 ITHLATLYHDDV--MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGTD--------TVAHFAET--FGELV 173 (360) T ss_dssp HHHHHHHHHHHH--HC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHH--HHHHH T ss_pred HHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCH--------HHHHHHHH--HHHHH T ss_conf 999999995686--8899999998751333574253340648789999998602403--------55888887--68988 Q ss_pred CCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1332221000--0003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 161 GGQMLDIQDE--FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 161 ~GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) .||.+|+.+. ..+.++|++|+.+|||+||.++|.+|++++|++++..+.+.+||+++|++|||+||++|+++|. T Consensus 174 ~GQ~~dl~~~~~~~~~e~y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~ 249 (360) T 3lmd_A 174 TGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSET 249 (360) T ss_dssp HHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-- T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 7778987465666879999999999999999999999999829899999999999999999999877865312885 No 14 >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Probab=100.00 E-value=0 Score=357.66 Aligned_cols=212 Identities=27% Similarity=0.485 Sum_probs=181.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH Q ss_conf 8999999999999999999997675302457157999998750-586007999999999961788222240246888899 Q gi|254781111|r 5 LPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIH 83 (237) Q Consensus 5 l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH 83 (237) +.+.+++....|+..|.+ .+.+...+.+.++.+|.+ .||||+||.|++++++++|++++.++++|+++|++| T Consensus 14 l~~~l~~~l~~v~~~i~~-------~l~s~~~~~i~~~~~~~~~~gGKr~Rp~l~ll~~~~~~~~~~~~~~~A~aiEliH 86 (341) T 3mzv_A 14 LAQALAEDMAAVNALIRE-------RMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIH 86 (341) T ss_dssp HHHHTHHHHHHHHHHHHH-------HSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 999999999999999999-------8444771679999999981899628899999999983997077999999999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99986477654453223445566543243452013322223347999973102341267888887653222356641133 Q gi|254781111|r 84 CYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQ 163 (237) Q Consensus 84 ~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ 163 (237) +|||||||| ||+|++|||+||+|.+||++.|||+||||++.+|+.+++.... +.+..++++ ...++.|| T Consensus 87 ~asLIHDDI--~D~~~~RRG~pt~~~~~G~~~AIl~GD~L~~~a~~~l~~~~~~-------~~~~~~~~~--~~~~~~Gq 155 (341) T 3mzv_A 87 TATLLHDDV--VDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNM-------RVMEILANA--SAVIAEGE 155 (341) T ss_dssp HHHHHHHHC--------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCH-------HHHHHHHHH--HHHHHHHH T ss_pred HHHHHCCCC--CCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHH--HHHHHCCH T ss_conf 999981876--6678655699975330682499998899999999864213654-------799999998--67760600 Q ss_pred CCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2221000---0003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 164 MLDIQDE---FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 164 ~~dl~~~---~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) .+|+.+. .+++++|++|+.+|||+||.++|.+|+++++++++..+.+.+||+++|+||||+||++|++||. T Consensus 156 ~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~l~~~~~~~~~~l~~~G~~lG~AFQI~DD~ld~~~d~ 229 (341) T 3mzv_A 156 VLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKS 229 (341) T ss_dssp HHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---- T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 79987502679989999999999999999999998410117998999999999999999999888876530786 No 15 >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Probab=100.00 E-value=0 Score=364.04 Aligned_cols=213 Identities=24% Similarity=0.329 Sum_probs=179.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999976753024571579999987505-86007999999999961788222240246888899999864776 Q gi|254781111|r 14 KRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDL 92 (237) Q Consensus 14 ~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~-gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI 92 (237) .+|++.+++++.+.. .+....++.+.+|++|.+. ||||+||.|+++++++++.+.+.++.+|++||++|+|||||||| T Consensus 4 ~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~y~~~~~GK~~Rp~l~~~~~~~~~~~~~~~~~~a~aiEllH~asLihDDI 82 (340) T 2e8v_A 4 NKMEAKIDELINNDP-VWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDI 82 (340) T ss_dssp -CHHHHHHHHHTSCC-CCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 689999999985076-6786340899999999982899519999999999883998899999999999999999987777 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-- Q ss_conf 544532234455665432434520133222233479999731023412678888876532223566411332221000-- Q gi|254781111|r 93 PSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE-- 170 (237) Q Consensus 93 ~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~-- 170 (237) ||+|++|||+||+|++||++.|||+||+|++.+|+++++.... ......++..++.. ...++.||.+|+.++ T Consensus 83 --~D~~~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~ll~~~~~~--~~~~~~i~~~~~~~--~~~~~~GQ~lDl~~~~~ 156 (340) T 2e8v_A 83 --EDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTK--EPLYHNLITIFNEE--LINLHRGQGLDIYWRDF 156 (340) T ss_dssp --HTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCC--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHS T ss_pred --CCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHH--HHHHHCCCCHHHHHHHC T ss_conf --7799986887079987596066763458999999988760772--17899999998650--14442353203343310 Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ----0003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 171 ----FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 171 ----~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) .++++.|++|+.+|||+||++||.+|++++|.++ ..+.+.+||.++|++|||+||++|++||. T Consensus 157 ~~~~~~t~e~Y~~ii~~KTa~Lf~~a~~~ga~lag~~~-~~~~l~~~g~~lGiaFQI~DD~lD~~~d~ 223 (340) T 2e8v_A 157 LPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQ 223 (340) T ss_dssp TTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-- T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCHHHHHHCCCCH T ss_conf 25676779999999998879999999999998613303-31689999999999980332565503985 No 16 >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Probab=100.00 E-value=0 Score=356.80 Aligned_cols=202 Identities=25% Similarity=0.415 Sum_probs=175.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999976753024571579999987505-86007999999999961788222240246888899999864776 Q gi|254781111|r 14 KRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDL 92 (237) Q Consensus 14 ~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~-gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI 92 (237) +.|++.|++.+. ...++.+.++++|.+. ||||+||.|+++++++++++++.++++|+++|++|+|||||||| T Consensus 12 ~~v~~~l~~~~~-------~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~AaavEliH~asLIHDDi 84 (295) T 3ipi_A 12 RYVEAGIKESIT-------LIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDL 84 (295) T ss_dssp HHHHHHHHHHHH-------TCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHH-------HCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999998742-------1487689999999872895518799999999980999899999999999999999997775 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-- Q ss_conf 544532234455665432434520133222233479999731023412678888876532223566411332221000-- Q gi|254781111|r 93 PSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE-- 170 (237) Q Consensus 93 ~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~-- 170 (237) ||+|++|||+||+|.+||++.||++||+|++.+|++++...... ...+... ...++.||.+|+... T Consensus 85 --~D~~~~RRG~pt~~~~~G~~~Ail~Gd~Ll~~a~~~l~~~~~~~--------~~~~~~~--~~~~~~gq~~d~~~~~~ 152 (295) T 3ipi_A 85 --LDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYGEKV--------IQDFGKA--GMDMAEGEVLDLKLEDE 152 (295) T ss_dssp --HHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGCHHH--------HHHHHHH--HHHHHHHHHHHHC---- T ss_pred --CCCCCCCCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHCCCCCHH--------HHHHHHH--HHHHHCCCHHHHHCCCC T ss_conf --78985544578547761829999946999999988632025167--------9999999--99996662588741466 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 171 FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 171 ~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) ..++++|++|+.+|||+||++||.+|++++|++++..+.+.+||.++|++|||+||++|++|+. T Consensus 153 ~~~~~~y~~i~~~KT~~lf~~a~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~ 216 (295) T 3ipi_A 153 SFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVV 216 (295) T ss_dssp ---CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 7889999999998999999999999999737999999999999999999999999999854898 No 17 >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Probab=100.00 E-value=0 Score=356.90 Aligned_cols=208 Identities=23% Similarity=0.306 Sum_probs=177.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH Q ss_conf 48999999999999999999997675302457157999998750586007999999999961788222240246888899 Q gi|254781111|r 4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIH 83 (237) Q Consensus 4 ~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH 83 (237) ++.+.+.+.+..|++.+++++. ...++.+.++++|.+.||||+||.|++++++++|++.+.++++|+++|++| T Consensus 10 ~~~~~~~~~~~~i~~~i~~~l~-------~~~~~~l~~~~~y~~~gGKr~Rp~L~l~~~~~~g~~~~~~~~~A~aiEllH 82 (289) T 2azj_A 10 SIIEFWLEAKATIDRLIEQFLN-------SNRDWDLVDISSYILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILH 82 (289) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HCSCTTHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 7999999999999999999863-------379756999999786587648999999999982998889999999999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99986477654453223445566543243452013322223347999973102341267888887653222356641133 Q gi|254781111|r 84 CYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQ 163 (237) Q Consensus 84 ~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ 163 (237) +|||||||| ||+|++|||+||+|.+||++.||++||+|++.++++++..... . .+..+.+. ...++.|| T Consensus 83 ~asLihDDi--~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~---~----~~~~~~~~--~~~~~~Gq 151 (289) T 2azj_A 83 SASLALCDI--VDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGD---D----ALNTSIEL--WKDTSVGA 151 (289) T ss_dssp HHHHHHHHH--HTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---H----HHHHHHHH--HHHHHHHH T ss_pred HHHHHCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC---H----HHHHHHHH--HHHHHHHH T ss_conf 999972787--7888778896552657895899999899997657776521442---2----58999988--77776414 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 22210000003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 164 MLDIQDEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 164 ~~dl~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) .+|+. ++++|++|+++|||+||++||.+|+++++. ++..+.+.+||.++|++|||+||++|+++|. T Consensus 152 ~~d~~----~~~~y~~~i~~KTg~Lf~~~~~~ga~~~~~-~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~ 217 (289) T 2azj_A 152 LRDMY----DNSDYIRTIELKTGSLFKLSTVLSAYASKH-YNTKQQMLDVGKYLGIIYQVIDDFVDYKTKK 217 (289) T ss_dssp HHTTT----TTSCHHHHHHHHTHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHHHHHHHHHHHHTTSC T ss_pred HHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 55216----688999999999889999998768986388-1022689999877678999999988733772 No 18 >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Probab=100.00 E-value=0 Score=353.82 Aligned_cols=205 Identities=27% Similarity=0.420 Sum_probs=172.9 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 999999997675302457157999998750-5860079999999999617882222402468888999998647765445 Q gi|254781111|r 18 TILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMD 96 (237) Q Consensus 18 ~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D 96 (237) ..+..+-......+.+. .+.+.++.+|.+ .||||+||.|+++++++++++.+.++++|+++|++|+|||||||| || T Consensus 33 ~d~~~v~~~i~~~l~s~-~~~i~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi--~D 109 (345) T 3oyr_A 33 ADMAGVNRLITDRMQSD-VAIIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDV--VD 109 (345) T ss_dssp HHHHHHHHHHHHHTCCS-STHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTT--C- T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CC T ss_conf 99999999999987688-2779999999874898517399999999981998789999999999999999986877--78 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH---HHH Q ss_conf 32234455665432434520133222233479999731023412678888876532223566411332221000---000 Q gi|254781111|r 97 NGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE---FID 173 (237) Q Consensus 97 ~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~---~~~ 173 (237) +|++|||+||+|.+||+..||++||||++.+|+.+++..... .+..+++. ...+++||.++.... .++ T Consensus 110 ~~~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~-------~~~~~~~~--~~~~~~G~~~~~~~~~~~~~~ 180 (345) T 3oyr_A 110 GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMK-------ALEILARA--SRVIAEGEVLQLMRSHDLNLS 180 (345) T ss_dssp --------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHH--HHHHHHHHHHHHHTSSCSSCC T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH-------HHHHHHHH--HHHHHCCHHHHHHHHCCCCCC T ss_conf 875667998857366842888999999999887544111068-------89999999--999973106887762277766 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 174 ETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 174 ~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) +++|++|+.+|||+||.++|.+|+++++++++..+.+.+||.++|++|||+||++|++||. T Consensus 181 ~~~yl~ii~~KTa~L~~~~~~~ga~~~~~~~~~~~~l~~~G~~lG~AFQI~DDllD~~~~~ 241 (345) T 3oyr_A 181 QAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGAT 241 (345) T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 8999999999874899999987998837999999999988899999999987654134346 No 19 >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, isoprene biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Probab=100.00 E-value=0 Score=357.14 Aligned_cols=220 Identities=38% Similarity=0.637 Sum_probs=185.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH Q ss_conf 48999999999999999999997675302457157999998750586007999999999961788222240246888899 Q gi|254781111|r 4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIH 83 (237) Q Consensus 4 ~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH 83 (237) ++.++|++..+.|+..+.+.+... .+..+.++++|+++||||+||.|++++++++|++++.++++|+|||++| T Consensus 2 ~l~~~l~~~~~~v~~~l~~~~~~~-------~~~~l~~~~~y~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH 74 (297) T 3m0g_A 2 SLSERLKEVQDAVETAMAAAIGRL-------PAGDLRDAMAYAAQGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALH 74 (297) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTS-------CCSHHHHHHHHHHSCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 879999999999999999986438-------8088999998474575189999999999880969899999999999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99986477654453223445566543243452013322223347999973102341267888887653222356641133 Q gi|254781111|r 84 CYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQ 163 (237) Q Consensus 84 ~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ 163 (237) +||||||||+++|+|++|||+||+|.+||++.|||+||++++.+|+++++...... ............+.+..+++.|| T Consensus 75 ~asLIHDDI~d~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~q 153 (297) T 3m0g_A 75 AYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSA-ENRVALVAALAQASGAEGMVYGQ 153 (297) T ss_dssp HHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCH-HHHHHHHHHHHHHHSTTTHHHHH T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999187646898744489964687708547677511787767999875201208-88999999999999999999773 Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2221000----0003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 164 MLDIQDE----FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 164 ~~dl~~~----~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) ..++... ..+++.|++|+.+|||+||.++|.+|+++++.++. .+.+||+++|++|||+||++|++||. T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~KTa~l~~~~~~~~~~~~~~~~~---~~~~~g~~lG~aFQi~DDlld~~gd~ 225 (297) T 3m0g_A 154 ALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNE 225 (297) T ss_dssp HHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC------ T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 7988866226307899999987999999999999989987499789---99987788888999888988731787 No 20 >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Probab=100.00 E-value=0 Score=351.08 Aligned_cols=225 Identities=36% Similarity=0.556 Sum_probs=188.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH Q ss_conf 8999999999999999999997675302457157999998750-586007999999999961788222240246888899 Q gi|254781111|r 5 LPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIH 83 (237) Q Consensus 5 l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH 83 (237) .+..+.++.++++..+++++.+. .. .++.+.++++|.+ .||||+||.|+++++++++++++.+.++|++||++| T Consensus 9 ~~~~~~~~~~~~~~~l~~~~~~~----~~-~~~~l~~~~~y~~~~GGKr~Rp~l~l~~~~~~~~~~~~~~~~A~aiEllH 83 (313) T 3lom_A 9 NKQVIDKYTQRHELYLEQLLNEI----II-PAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTH 83 (313) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS----CC-CCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHC----CC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 89999999999999999987635----79-84789999998870796419999999999985988889999999999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99986477654453223445566543243452013322223347999973102-34126788888765322235664113 Q gi|254781111|r 84 CYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKT-QLKDNIRSQLMLSLTHNIGLQGMLGG 162 (237) Q Consensus 84 ~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~G 162 (237) ++|||||||||||+|++|||+||+|.+||+..||++||++++.+++.+..... ..+..........+..+.+..+++.| T Consensus 84 ~asLIHDDI~~mD~s~~RRG~pt~h~~~g~~~Ai~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g 163 (313) T 3lom_A 84 CYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSG 163 (313) T ss_dssp HHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHH T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99997477403587644567975778865488898755688999887533101225388899999999997300342144 Q ss_pred CCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3222100---00003679999999863489999999-999759888999999999999849999986765344320 Q gi|254781111|r 163 QMLDIQD---EFIDETQVFMIQKMKTGALMCFACES-GAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 163 Q~~dl~~---~~~~~~~y~~i~~~KTa~lf~~~~~~-ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) |..|+.. ..++.+.|++|+++|||+||.+++.+ |+++++.+++..+.+.+||.++|++|||+||++|++||. T Consensus 164 ~~~d~~~~~~~~~~~~~y~~i~~~KT~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~ 239 (313) T 3lom_A 164 QSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPT 239 (313) T ss_dssp HHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCH T ss_conf 0467777740468899999999985377988779999998443227899999999999998802321421024898 No 21 >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Probab=100.00 E-value=0 Score=347.51 Aligned_cols=193 Identities=23% Similarity=0.241 Sum_probs=160.7 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-----------------CCCCHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 799999875058600799999999996178822-----------------224024688889999986477654453223 Q gi|254781111|r 38 RLLSAIRYALLGGKKIRSFLVTECASLFNVNHL-----------------TALRVGAAIECIHCYSLIHDDLPSMDNGYI 100 (237) Q Consensus 38 ~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~-----------------~~~~~AaavEllH~asLihDDI~~~D~s~~ 100 (237) .+.++++|++.||||+||++++++++++.+... .+..+|++||++|+|||||||| ||+|++ T Consensus 57 ~~~~~~~y~~~GGKr~Rp~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~la~~iEllH~asLihDDI--mD~s~~ 134 (390) T 3dyh_A 57 YLRKMMDTTCLGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDI--MDNSVT 134 (390) T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCE T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCC T ss_conf 999999654688542023999999999716686643100000012456899999999999999999987103--579988 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH----------- Q ss_conf 445566543243452013322223347999973102341267888887653222356641133222100----------- Q gi|254781111|r 101 RRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD----------- 169 (237) Q Consensus 101 RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~----------- 169 (237) |||+||+|.+||++.||++||+|++.++..+.............+++..+++.. ..++.||.+|+.+ T Consensus 135 RRG~pt~h~~~g~~~ai~~gD~ll~~a~~~~~~~~~~~~~~~~~~il~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~ 212 (390) T 3dyh_A 135 RRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVD--YTTAVGQLYDVTSMFDSNKLDPDV 212 (390) T ss_dssp ETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH--HHHHHHHHHHHTTTSCGGGCCTTS T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHH T ss_conf 799975031367488899822999999999998523667156999999999999--999888886443010241234777 Q ss_pred --------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --------0000367999999986348-9999999999759888-999999999999849999986765344320 Q gi|254781111|r 170 --------EFIDETQVFMIQKMKTGAL-MCFACESGAIMAHASQ-NEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 170 --------~~~~~~~y~~i~~~KTa~l-f~~~~~~ga~lag~~~-~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) ...|+++|++|+++|||+| |.+|+.+|++++|+.+ ...+.+.+||.++|++|||+|||||++||. T Consensus 213 ~~~~~~~~~~~t~~~Y~~ii~~KTa~l~~~~~~~~g~~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~ 287 (390) T 3dyh_A 213 SQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPP 287 (390) T ss_dssp CCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 630223432179999999999776699999999998977051178899889888999999999999988700896 No 22 >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Probab=100.00 E-value=0 Score=344.17 Aligned_cols=192 Identities=26% Similarity=0.264 Sum_probs=160.0 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 5799999875058600799999999996178822-------224024688889999986477654453223445566543 Q gi|254781111|r 37 DRLLSAIRYALLGGKKIRSFLVTECASLFNVNHL-------TALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHI 109 (237) Q Consensus 37 ~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~-------~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~ 109 (237) ..+.++++|.+.||||+||+++++++++++++.. .++++|++||++|++||||||| ||+|++|||+||+|+ T Consensus 57 ~~l~~~l~y~~~GGKrlRp~l~~~~~~~~~~~~~~~~~~~~~a~~~a~aiEliH~asLvhDDI--~D~s~~RRG~pt~h~ 134 (367) T 1uby_A 57 ARLKEVLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDI--MDQSLTRRGQLCWYK 134 (367) T ss_dssp HHHHHHHHHHSSSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGG T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCC T ss_conf 999999846568863266999999999857997666678999999999999999999998264--407887789833101 Q ss_pred CCCCCCCHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH--------HHHHHHHHH Q ss_conf 2434520133222233479-9997310234126788888765322235664113322210000--------003679999 Q gi|254781111|r 110 QYDEVTAIIAGNGLLTYAF-EIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF--------IDETQVFMI 180 (237) Q Consensus 110 ~~G~~~AIl~Gd~l~~~a~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~--------~~~~~y~~i 180 (237) +||++.||+.||+|+..++ .++...... .....+++..++++. ..++.||.+|+.+.. .+++.|++| T Consensus 135 ~~g~~~ail~gd~ll~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~t~~~y~~i 210 (367) T 1uby_A 135 KEGVGLDAINDSFLLESSVYRVLKKYCRQ--RPYYVHLLELFLQTA--YQTELGQMLDLITAPVSKVDLSHFSEERYKAI 210 (367) T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHH--HHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHH T ss_pred CCHHHHHHHHCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH T ss_conf 12043888711348999999999872546--558999999999988--88899999999731244445432789999999 Q ss_pred HHHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99986348--9999999999759888999999999999849999986765344320 Q gi|254781111|r 181 QKMKTGAL--MCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 181 ~~~KTa~l--f~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) +++|||.| |..++..++++++.+++..+.+.+||.++|++|||+||++|++||. T Consensus 211 i~~KTa~ls~~~~~~~~~~~~g~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~ 266 (367) T 1uby_A 211 VKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDP 266 (367) T ss_dssp HHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 99988888889999987332222203778777655300057677314676602896 No 23 >2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3mys_A* Probab=100.00 E-value=0 Score=353.50 Aligned_cols=190 Identities=23% Similarity=0.226 Sum_probs=158.6 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 9999987505860079999999999617882------2224024688889999986477654453223445566543243 Q gi|254781111|r 39 LLSAIRYALLGGKKIRSFLVTECASLFNVNH------LTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYD 112 (237) Q Consensus 39 l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~------~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G 112 (237) ....++|+++||||+||+|++++++++++.. +.++++|++||++|++||||||| ||+|++|||+||+|++|| T Consensus 68 ~~~~~~y~~~GGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~a~aiEllH~asLIHDDI--~D~s~~RRG~pt~h~~~g 145 (395) T 2ihi_A 68 YKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDI--MDKGEMRRNKYCWYLLKD 145 (395) T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCSEETTEECGGGSTT T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCHHCCCC T ss_conf 999986678884006499999999981899888403999999999999999999998574--148898899711411678 Q ss_pred CCCCHHHHHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH--------------------- Q ss_conf 4520133222233--47999973102341267888887653222356641133222100--------------------- Q gi|254781111|r 113 EVTAIIAGNGLLT--YAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD--------------------- 169 (237) Q Consensus 113 ~~~AIl~Gd~l~~--~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~--------------------- 169 (237) ++.||++||+|+. .++.++...... .....+++..++++. ..++.||.+|+.+ T Consensus 146 ~~~Ail~GD~ll~~~~~~~ll~~~~~~--~~~~~~i~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e 221 (395) T 2ihi_A 146 VETKNAVNDVLLLYNSIYKLIEIYLRN--ESCYVDVIATFRDAT--LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPE 221 (395) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHH--HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC- T ss_pred CHHHHHHCHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHH T ss_conf 158888351999999999999873258--166999999999999--9999999999998860120466665200112100 Q ss_pred ------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ------0000367999999986348-999999999975988--8999999999999849999986765344320 Q gi|254781111|r 170 ------EFIDETQVFMIQKMKTGAL-MCFACESGAIMAHAS--QNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 170 ------~~~~~~~y~~i~~~KTa~l-f~~~~~~ga~lag~~--~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) ..+++++|++|+.+|||+| |.+|+.+|++++|.+ +...+.+.+||.++|++|||+||++|++||. T Consensus 222 ~~~~~~~~~t~~~Y~~~i~~KTa~L~~~~~~~~g~~~ag~~~d~~~~~~l~~~g~~lGiaFQI~DD~lD~~gd~ 295 (395) T 2ihi_A 222 QPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDS 295 (395) T ss_dssp CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC-- T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 00122243899999999997548999999999999860463008999999999999999999866877610895 No 24 >2ftz_A Geranyltranstransferase; TM0161, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima MSB8} Probab=100.00 E-value=0 Score=350.00 Aligned_cols=207 Identities=30% Similarity=0.472 Sum_probs=172.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999999999999976753024571579999987505-86007999999999961788222240246888899999864 Q gi|254781111|r 11 ENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIH 89 (237) Q Consensus 11 ~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~-gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLih 89 (237) -..+.|++.+.+++ .+..+..+.++++|.+. ||||+||.|++++++++|++.+.++++|+++|++|+||||| T Consensus 13 ~~~~~v~~~l~e~~-------~~~~~~~~~~a~~y~~~~GGKrlRp~L~l~~~~~~g~~~~~~~~~AaaiEllH~asLIH 85 (284) T 2ftz_A 13 MKXEXVEERIREIL-------RPGWDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIH 85 (284) T ss_dssp HHHHHHHHHHHHHH-------SCSSCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 05999999999870-------56896579999998881699808799999999980988789999999999999999997 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 77654453223445566543243452013322223347999973102341267888887653222356641133222100 Q gi|254781111|r 90 DDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD 169 (237) Q Consensus 90 DDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~ 169 (237) ||||+||++++|||+||+|.+||++.||++||+|++.+|+++++...... +..+... ...++.||..|... T Consensus 86 DDI~d~D~~~~RRg~pt~h~~~g~~~Ail~GD~L~~~a~~~l~~~~~~~~-------~~~~~~~--~~~~~~g~~~~~~~ 156 (284) T 2ftz_A 86 DDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXI-------FEEFSET--AYXLLLGEAMDVEF 156 (284) T ss_dssp HHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHH-------HHHHHHH--HHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHH-------HHHHHHH--HHHHHHHHHHHHHH T ss_conf 78853568756699843042103177999779999998762101245136-------8999999--99999999999998 Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC Q ss_conf 0----0003679999999863489999999999759888999999999999849999986765344320---67 Q gi|254781111|r 170 E----FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL---PK 236 (237) Q Consensus 170 ~----~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~k 236 (237) . ..+++.|..|+.+|||+||.+||.+|++++|.++ +.+.+||+++|++|||+||++|++||. || T Consensus 157 ~~~~~~~~~~~~~~~~~~KT~~lf~~~~~~gail~g~~~---~~l~~~g~~lG~aFQI~DDilD~~gd~~~~GK 227 (284) T 2ftz_A 157 ERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDH---TXMXLLGEXFGVAFQIYDDLXDILGSFEKVGK 227 (284) T ss_dssp HHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-- T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHCCHHHHCCCCCHHHHCC T ss_conf 751020118999999998899999889999999808978---79998750668875210633102589898697 No 25 >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural genomics consortium, SGC; HET: RIS; 1.80A {Homo sapiens} PDB: 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* 3n1w_F* 3n3l_F* 2f94_F* ... Probab=100.00 E-value=0 Score=342.48 Aligned_cols=220 Identities=20% Similarity=0.206 Sum_probs=174.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC-------CCCCCHH Q ss_conf 999999999999999997675302-----4571579999987505860079999999999617882-------2224024 Q gi|254781111|r 9 LQENSKRIDTILDDLLLQTASHMQ-----TQHNDRLLSAIRYALLGGKKIRSFLVTECASLFNVNH-------LTALRVG 76 (237) Q Consensus 9 l~~~~~~id~~l~~~l~~~~~~~~-----~~~~~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~-------~~~~~~A 76 (237) .++.++++.+...++..++..... ......+.++++|.+.||||+||+++++++++++.+. +.++++| T Consensus 31 ~~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~Y~~~GGKr~R~llv~~~~~~l~~~~~~~~e~~~~a~~~a 110 (374) T 2qis_A 31 YAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVG 110 (374) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC--CGGGHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH T ss_conf 99999999999999999987641269870579999999985757883107599999999986486568867899999999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 688889999986477654453223445566543243452-0133222233479999731023412678888876532223 Q gi|254781111|r 77 AAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVT-AIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIG 155 (237) Q Consensus 77 aavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~-AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (237) ++||++|+|||||||| ||+|++|||+||||++||++. |||+||+|++.+++++.......+ ...+++..++++. T Consensus 111 ~~iEllH~asLvhDDI--mD~s~~RRG~pt~~~~~G~~~~Ai~~gd~L~~~~~~ll~~~~~~~~--~~~~l~~~~~~~~- 185 (374) T 2qis_A 111 WCVELLQAFFLVADDI--MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQP--YYLNLIELFLQSS- 185 (374) T ss_dssp HHHHHHHHHHHHHHHH--HTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTST--THHHHHHHHHHHH- T ss_pred HHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHH- T ss_conf 9999999999998676--3699888998353457885388995199999999999998423563--7999999999999- Q ss_pred HHHHHCCCCCCCCHH--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 566411332221000--------000367999999986348-999999999975988-8999999999999849999986 Q gi|254781111|r 156 LQGMLGGQMLDIQDE--------FIDETQVFMIQKMKTGAL-MCFACESGAIMAHAS-QNEKERLRCFGENLGIIFQLAD 225 (237) Q Consensus 156 ~~~l~~GQ~~dl~~~--------~~~~~~y~~i~~~KTa~l-f~~~~~~ga~lag~~-~~~~~~l~~~g~~lGiafQi~D 225 (237) ..++.||.+|+.+. ..+++.|++|+++|||+| |.+|+.+|++++|.+ ++....+.+||.++|++|||+| T Consensus 186 -~~~~~GQ~lDl~~~~~~~~d~~~~t~~~Y~~ii~~KTa~l~~~~~~~~~~~~ag~~~~~~~~~l~~~g~~lG~aFQI~D 264 (374) T 2qis_A 186 -YQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQD 264 (374) T ss_dssp -HHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred -HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf -9998759999883125666643167999999999986688999999988640110188899888789999999895123 Q ss_pred HHHHHHHHH Q ss_conf 765344320 Q gi|254781111|r 226 DLLDCEEDL 234 (237) Q Consensus 226 D~lD~~~D~ 234 (237) |+||++||. T Consensus 265 D~LD~~gd~ 273 (374) T 2qis_A 265 DYLDLFGDP 273 (374) T ss_dssp HHHHHHSCH T ss_pred HHHHHCCCH T ss_conf 555401895 No 26 >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl allyl pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Probab=100.00 E-value=0 Score=344.08 Aligned_cols=195 Identities=23% Similarity=0.239 Sum_probs=157.5 Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-----------CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 15799999875058600799999999996178822-----------2240246888899999864776544532234455 Q gi|254781111|r 36 NDRLLSAIRYALLGGKKIRSFLVTECASLFNVNHL-----------TALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGK 104 (237) Q Consensus 36 ~~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~-----------~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~ 104 (237) ...+.+.++|.+.||||+||.|++++++++++... .+..+|++||++|+|||||||| ||+|++|||+ T Consensus 33 ~~~~~~~~~y~~~GGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~iEllH~asLihDDI--~D~s~~RRG~ 110 (362) T 1yhl_A 33 ARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDI--MDGSVMRRGK 110 (362) T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTE T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCC T ss_conf 99999999645788531027999999999636434554325677899999999999999999997322--6799888999 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH--------------- Q ss_conf 66543243452013322223347999973102341267888887653222356641133222100--------------- Q gi|254781111|r 105 PTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD--------------- 169 (237) Q Consensus 105 pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~--------------- 169 (237) ||+|++||++.||++||+|++.++..+.............+++..+++.. ...+.||.+|+.+ T Consensus 111 pt~h~~~G~~~ai~~gD~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~d~e~~~~~ 188 (362) T 1yhl_A 111 PCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVD--YATAVGQMYDVTSMCDSNKLDPEVAQPM 188 (362) T ss_dssp ECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH--HHHHHHHHHHHTTTBCGGGCCTTSCCCB T ss_pred CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHCCCCHHHHHHHHC T ss_conf 87423068189999663999999999998752468455899999999999--9999998704124404631118988630 Q ss_pred ----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ----0000367999999986348-99999999997598889-99999999999849999986765344320 Q gi|254781111|r 170 ----EFIDETQVFMIQKMKTGAL-MCFACESGAIMAHASQN-EKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 170 ----~~~~~~~y~~i~~~KTa~l-f~~~~~~ga~lag~~~~-~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) ..+++++|++|+.+|||+| |.+|+.+|++++|.+++ ..+.+.+||.++|++|||+||++|++||. T Consensus 189 ~~~~~~~t~~~Y~~~i~~KTa~L~~~~~~~~g~~~~g~~~~~~~~~l~~~g~~lGiaFQI~DDilD~~~d~ 259 (362) T 1yhl_A 189 TTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPP 259 (362) T ss_dssp CSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH T ss_pred CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 25620058999999999987467899999877877136318899888767879999999999988700797 No 27 >2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A* Probab=100.00 E-value=0 Score=355.87 Aligned_cols=192 Identities=23% Similarity=0.259 Sum_probs=168.3 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 799999875058600799999999996178----8222240246888899999864776544532234455665432434 Q gi|254781111|r 38 RLLSAIRYALLGGKKIRSFLVTECASLFNV----NHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDE 113 (237) Q Consensus 38 ~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~----~~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~ 113 (237) .+.++++|.+.||||+||++++++++++++ +.+.++++|++||++|+|||||||| ||+|++|||+||+|++||+ T Consensus 59 ~~~~~l~Y~~~GGKr~Rp~l~~~~~~~~~~~~~~~~e~~~~la~~iEllH~asLIhDDI--~D~s~~RRG~pt~h~~~G~ 136 (368) T 2her_A 59 YYLNCIDYNVKKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDI--MDSGKFRRGAPCWYIVHGQ 136 (368) T ss_dssp HHHHHHHHHTTSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCEETTEECHHHHTHH T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCHHHCCCC T ss_conf 99999736789840052899999999838876688899999999999999999998532--6799988997046544540 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-----HHHHHHHHHHHHHHHHHH Q ss_conf 520133222233479999731023412678888876532223566411332221000-----000367999999986348 Q gi|254781111|r 114 VTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE-----FIDETQVFMIQKMKTGAL 188 (237) Q Consensus 114 ~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~-----~~~~~~y~~i~~~KTa~l 188 (237) +.|||+||+|++++++++.+...........+++..++++. ..++.||.+|+.+. .++++.|++|+++|||+| T Consensus 137 ~~AI~~gd~L~~~a~~~l~~l~~~~~~~~~~~i~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~t~e~Yl~ii~~KTa~l 214 (368) T 2her_A 137 SNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRY 214 (368) T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 56875799999999999987423567499999999988887--7876308998874511568856999999999986416 Q ss_pred -HHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf -9999999999759--88899999999999984999998676534432 Q gi|254781111|r 189 -MCFACESGAIMAH--ASQNEKERLRCFGENLGIIFQLADDLLDCEED 233 (237) Q Consensus 189 -f~~~~~~ga~lag--~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D 233 (237) |.+|+.+|++++| .+++..+.+.+||.++|++|||+||++|++++ T Consensus 215 ~f~~~~~~g~~lag~~~~~~~~~~l~~~g~~lGiaFQI~DD~lD~~~g 262 (368) T 2her_A 215 TFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLFN 262 (368) T ss_dssp HTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 888999999997154202378999999999999999917987524069 No 28 >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum} Probab=100.00 E-value=0 Score=340.45 Aligned_cols=223 Identities=26% Similarity=0.343 Sum_probs=180.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHH-HHHCCCCCHHHHHHHHHHHHHCCC------CCCCCCCHHHH Q ss_conf 999999999999999999767530245715--799999-875058600799999999996178------82222402468 Q gi|254781111|r 8 KLQENSKRIDTILDDLLLQTASHMQTQHND--RLLSAI-RYALLGGKKIRSFLVTECASLFNV------NHLTALRVGAA 78 (237) Q Consensus 8 ~l~~~~~~id~~l~~~l~~~~~~~~~~~~~--~l~~~~-~y~l~gGKr~R~~l~l~~~~~~~~------~~~~~~~~Aaa 78 (237) ++.++.+.|++.+++++...........++ .+.+.+ +|.++||||+||.||+++++++++ +.+.++++|++ T Consensus 17 ~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~A~a 96 (380) T 3lk5_A 17 DLDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAAS 96 (380) T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 99999999999999999998876411361299999999986017845061999999999828876665237999999999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC----------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 88899999864776544532234455665432----------------43452013322223347999973102341267 Q gi|254781111|r 79 IECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQ----------------YDEVTAIIAGNGLLTYAFEIISSPKTQLKDNI 142 (237) Q Consensus 79 vEllH~asLihDDI~~~D~s~~RRG~pt~h~~----------------~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~ 142 (237) +|++|+|||||||| ||+|++|||+||+|.+ ||+..||++||+|++.+++++++... .... T Consensus 97 iEllH~asLIHDDI--~D~s~~RRG~pt~h~~~~~~~~~~~~~~~~~~~g~~~ail~GD~l~~~a~~ll~~~~~--~~~~ 172 (380) T 3lk5_A 97 LEFIQACALIHDDI--IDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGL--SAEA 172 (380) T ss_dssp HHHHHHHHHHHHHH--HTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCC--CHHH T ss_pred HHHHHHHHHHCCCC--CCCCCCCCCCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHH T ss_conf 99999999972770--1599876898637652206799861453077770889999988999999998653167--7899 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 88888765322235664113322210000---0036799999998634-8999999999975988899999999999984 Q gi|254781111|r 143 RSQLMLSLTHNIGLQGMLGGQMLDIQDEF---IDETQVFMIQKMKTGA-LMCFACESGAIMAHASQNEKERLRCFGENLG 218 (237) Q Consensus 143 ~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~---~~~~~y~~i~~~KTa~-lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG 218 (237) ..+++..++.. ...++.||.+|+.+.. .+.+.|..++.+||++ +|.+||.+|++++|++++..+.+.+||.++| T Consensus 173 ~~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~~~~~~~~~~~~~kta~~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG 250 (380) T 3lk5_A 173 LARTRDAWRGM--RTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIG 250 (380) T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 99999999888--8888500568887512431038999999998874699999999887653499999999999999999 Q ss_pred HHHHHHHHHHHHHHH---HCC Q ss_conf 999998676534432---067 Q gi|254781111|r 219 IIFQLADDLLDCEED---LPK 236 (237) Q Consensus 219 iafQi~DD~lD~~~D---~~k 236 (237) +||||+||++|++|| .|| T Consensus 251 iaFQI~DD~lD~~g~~~~~GK 271 (380) T 3lk5_A 251 IAFQLRDDLLGVFGDPAITGK 271 (380) T ss_dssp HHHHHHHHHHHHHSCHHHHSS T ss_pred HHHHHHHHHHHHCCCHHHCCC T ss_conf 999998888763089854699 No 29 >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Probab=100.00 E-value=0 Score=339.70 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=183.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 348999999999999999999997675302457157999998750-5860079999999999617882222402468888 Q gi|254781111|r 3 GGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIEC 81 (237) Q Consensus 3 ~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEl 81 (237) -++++.+++...+|++.+.+.+. ..++.+.++++|.+ .||||+||+|++++++++|++.+.++++|+++|+ T Consensus 4 ~~~~~~l~~~~~~v~~~l~~~~~--------~~~~~~~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEl 75 (325) T 3aqb_B 4 LSYKAFLNPYIIEVEKRLYECIQ--------SDSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLEL 75 (325) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC--------CSSHHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 46999999999999999998755--------7857899999999838985186999999998829987899999999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999864776544532234455665432434520133222233479999731023412678888876532223566411 Q gi|254781111|r 82 IHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLG 161 (237) Q Consensus 82 lH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (237) +|+|||||||| +|+|+.|||+||+|.+||+..|||+||++++.+++.+........ .... ... ...++. T Consensus 76 lH~asLIhDDI--~D~~~~RRg~pt~h~~~G~~~ail~Gd~l~~~a~~~~~~~~~~~~----~~~~---~~~--~~~~~~ 144 (325) T 3aqb_B 76 VHMASLVHDDY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKF----HQIF---SKT--ILEVCF 144 (325) T ss_dssp HHHHHHHHHHH--HHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHH----HHHH---HHH--HHHHHH T ss_pred HHHHHHHHCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH----HHHH---HHH--HHHHHH T ss_conf 99999985888--889988789987665314689998346788877775321334689----9999---998--765411 Q ss_pred CCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C Q ss_conf 33222100---00003679999999863489999999999759888999999999999849999986765344320---6 Q gi|254781111|r 162 GQMLDIQD---EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL---P 235 (237) Q Consensus 162 GQ~~dl~~---~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~ 235 (237) ||..++.. ..++++.|++|++.|||+||+++|.+|+++++++++..+.+.+||.++|++|||+||++|++||. | T Consensus 145 g~~~~~~~~~~~~~~~~~y~~ii~~KT~~l~~~~~~~~ail~~~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~G 224 (325) T 3aqb_B 145 GEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLG 224 (325) T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHCC T ss_conf 41899888607888999999999999999999999999997699756563599999999999983441320358865519 Q ss_pred C Q ss_conf 7 Q gi|254781111|r 236 K 236 (237) Q Consensus 236 k 236 (237) | T Consensus 225 K 225 (325) T 3aqb_B 225 K 225 (325) T ss_dssp S T ss_pred C T ss_conf 8 No 30 >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} Probab=100.00 E-value=0 Score=336.83 Aligned_cols=229 Identities=32% Similarity=0.493 Sum_probs=179.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCC------CCCCCC Q ss_conf 98348999999999999999999997675302457157999998750-58600799999999996178------822224 Q gi|254781111|r 1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNV------NHLTAL 73 (237) Q Consensus 1 m~~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~------~~~~~~ 73 (237) |+.+.|. +. +.++..+.+++++.+......... +.+.+++.|.+ +||||+||.||++++.++++ +.+.++ T Consensus 1 ~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~-p~l~~~~~~~~~~GGKr~Rp~l~l~~~~al~g~~~~~~~~~~~~ 77 (311) T 3llw_A 1 MSLSSPN-LS-FYYNECERFESFLKNHHLHLESFH-PYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYF 77 (311) T ss_dssp -CCCCHH-HH-HHHHHHHHHHHHHHTCCCCCCSSC-SSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHH T ss_pred CCCCCCC-HH-HHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 9989854-68-999999999999997366405778-17999999998589851349999999998648764576579999 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 02468888999998647765445322344556654324345201332222334799997310234126788888765322 Q gi|254781111|r 74 RVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHN 153 (237) Q Consensus 74 ~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (237) ++|++||++|+|||||||||+||+|++|||+||+|++||+..||++||++++.+++++........ ............ T Consensus 78 ~lA~aiELlH~asLIhDDI~~mD~s~~RRG~pt~h~~~g~~~ai~~gd~l~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 155 (311) T 3llw_A 78 KIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESH--IIVELIKILSAN 155 (311) T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHH--HHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHH T ss_conf 999999999999999808602466545799876545432289998652888889999873132047--899999999999 Q ss_pred HHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 23566411332221000--00036799999998634899999999997598-8899999999999984999998676534 Q gi|254781111|r 154 IGLQGMLGGQMLDIQDE--FIDETQVFMIQKMKTGALMCFACESGAIMAHA-SQNEKERLRCFGENLGIIFQLADDLLDC 230 (237) Q Consensus 154 ~~~~~l~~GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~-~~~~~~~l~~~g~~lGiafQi~DD~lD~ 230 (237) .+..+++.||..+.... ..+++.|..|+..||+++|.+++.+|+++++. +++..+.+++||.++|++|||+||++|+ T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lGiaFQi~DD~lD~ 235 (311) T 3llw_A 156 GGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDV 235 (311) T ss_dssp HSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999988999887412578999999999985889998999999998863543789999999999989989737988853 Q ss_pred HHHH Q ss_conf 4320 Q gi|254781111|r 231 EEDL 234 (237) Q Consensus 231 ~~D~ 234 (237) +||. T Consensus 236 ~gd~ 239 (311) T 3llw_A 236 TQDE 239 (311) T ss_dssp HC-- T ss_pred CCCH T ss_conf 4888 No 31 >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Probab=100.00 E-value=0 Score=340.40 Aligned_cols=183 Identities=27% Similarity=0.352 Sum_probs=156.2 Q ss_pred HHHHHHC-CCCCHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 9998750-586007999999999961788-22224024688889999986477654453223445566543243452013 Q gi|254781111|r 41 SAIRYAL-LGGKKIRSFLVTECASLFNVN-HLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAII 118 (237) Q Consensus 41 ~~~~y~l-~gGKr~R~~l~l~~~~~~~~~-~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl 118 (237) +++.|.+ .||||+||.|++++++++|++ ++.++++|+|||++|+|||||||| ||+|++|||+||+|++||++.||+ T Consensus 30 ~~~~~~~~~~GKr~R~~l~l~~~~~~g~~~~~~~~~~AaaiEllH~asLihDDI--~D~s~~RRG~pt~~~~~g~~~ail 107 (299) T 1v4e_A 30 EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDV--IDGARFRRGKETINFMYGDKAAVA 107 (299) T ss_dssp HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEECHHHHHCHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHHCCHHHHH T ss_conf 999867646886299999999999839996377999999999999999986784--359999888002466622258998 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3222233479999731023412678888876532223566411332221000--00036799999998634899999999 Q gi|254781111|r 119 AGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE--FIDETQVFMIQKMKTGALMCFACESG 196 (237) Q Consensus 119 ~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~~~~~~g 196 (237) +||+|++.++++++....... ...+.+. ...++.||.+|+... ..++++|++|+.+|||+||.+||.+| T Consensus 108 ~gd~l~~~a~~~l~~~~~~~~-------~~~~~~~--~~~~~~Gq~~d~~~~~~~~t~~~y~~ii~~KTa~lf~~~~~~g 178 (299) T 1v4e_A 108 AGDLVLVSAFHTVEEIGNNKL-------RRAFLNV--IGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178 (299) T ss_dssp HHHHHHHHHHHHHHHHCCHHH-------HHHHHHH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCHHHH-------HHHHHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHH T ss_conf 244377776552000101788-------8888876--4300357878887227999999999998862101263104677 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCC Q ss_conf 9975988899999999999984999998676534432--0679 Q gi|254781111|r 197 AIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED--LPKK 237 (237) Q Consensus 197 a~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D--~~k~ 237 (237) ++++|.+++ .+.+||.++|++|||+||++|++|| .||+ T Consensus 179 ai~ag~~~~---~l~~~g~~lG~afQi~DD~lD~~g~~~~GK~ 218 (299) T 1v4e_A 179 ALLEGELGE---DLYNLGVTIGTIYQMFDDIMDFAGMEKIGKD 218 (299) T ss_dssp HHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHTTCCSCCTT T ss_pred HHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 775476166---8999999999999976998973528864995 No 32 >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Probab=100.00 E-value=0 Score=342.54 Aligned_cols=185 Identities=25% Similarity=0.298 Sum_probs=163.4 Q ss_pred CCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 7157999998750-586007999999999961788222240246888899999864776544532234455665432434 Q gi|254781111|r 35 HNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDE 113 (237) Q Consensus 35 ~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~ 113 (237) .++.+.+|++|.+ .||||+||.|+++++++++.+++.+.++|+++|++|+|||||||| ||+|++|||+||+|.+||+ T Consensus 9 ~~~~l~e~~~y~~~~gGKr~Rp~L~~~~~~~~~~~~~~~~~~a~aiEllH~asLIHDDI--~D~s~~RRG~pt~h~~~G~ 86 (301) T 2q80_A 9 VQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDNSKLRRGFPVAHSIYGI 86 (301) T ss_dssp HHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEECHHHHHCH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCHHHCCH T ss_conf 02799999999985899629999999999881998899999999999999999982764--6799888999971200573 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHHHHHHHHHHHHHHH Q ss_conf 520133222233479999731023412678888876532223566411332221000----0003679999999863489 Q gi|254781111|r 114 VTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE----FIDETQVFMIQKMKTGALM 189 (237) Q Consensus 114 ~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~----~~~~~~y~~i~~~KTa~lf 189 (237) +.|||+||+|++.+++.++....+. .+..++++ ...++.||.+|+.+. .+++++|+.|+.+|||+|| T Consensus 87 ~~Ail~Gd~l~~~a~~~~~~~~~~~-------~~~~~~~~--~~~~~~Gq~ld~~~~~~~~~~s~~~y~~~i~~KTa~Lf 157 (301) T 2q80_A 87 PSVINSANYVYFLGLEKVLTLDHPD-------AVKLFTRQ--LLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLF 157 (301) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTT-------HHHHHHHH--HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHH-------HHHHHHHH--HHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 8899998899988887641012489-------99999999--99987050458776402566769999999987269999 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999759888999999999999849999986765344320 Q gi|254781111|r 190 CFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 190 ~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) .+||.+|++++|.+++ +.+||+++|++|||+||++|++||. T Consensus 158 ~~~~~~ga~~~~~~e~----l~~~g~~lG~afQi~DD~lD~~~~~ 198 (301) T 2q80_A 158 GLAVGLMQLFSDYKED----LKPLLNTLGLFFQIRDDYANLHSKE 198 (301) T ss_dssp HHHHHHHHHTCCCCSC----CHHHHHHHHHHHHHHHHHHHHHCC- T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9998887764235689----9999999999998658878601885 No 33 >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genomics; 1.55A {Thermus thermophilus HB8} Probab=100.00 E-value=0 Score=332.61 Aligned_cols=190 Identities=22% Similarity=0.273 Sum_probs=161.4 Q ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 5799999875-058600799999999996178822224024688889999986477654453223445566543243452 Q gi|254781111|r 37 DRLLSAIRYA-LLGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVT 115 (237) Q Consensus 37 ~~l~~~~~y~-l~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~ 115 (237) +.+.++++|. .+||||+||.|++++++++|++.+.++++|+++|++|+|||||||| ||+|++|||+||+|.+||++. T Consensus 25 ~~~~~~~~~~~~~gGK~~R~~l~~~~~~~~~~~~~~~~~~A~a~EliH~asLihDDi--~D~s~~RRG~pt~h~~~G~~~ 102 (330) T 1wmw_A 25 PLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDI--EDGSEERRGRPALHRLHPMPL 102 (330) T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECHHHHSCHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHCCCCC T ss_conf 689999999885696409999999999981998789999999999999999987576--779999898804988717632 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-----HHHHHHHHHHHHHHHHHHH Q ss_conf 01332222334799997310234126788888765322235664113322210000-----0036799999998634899 Q gi|254781111|r 116 AIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF-----IDETQVFMIQKMKTGALMC 190 (237) Q Consensus 116 AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~-----~~~~~y~~i~~~KTa~lf~ 190 (237) |||+||||++++|+++++......... ..+..+++. ...++.||.+|+.+.. .++++|++++.+|||+||. T Consensus 103 Ail~Gd~L~a~a~~~l~~~~~~~~~~~--~~~~~~~~~--~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~Kta~l~~ 178 (330) T 1wmw_A 103 ALNAGDAMHAEMWGLLAEGLARGLFPP--EVLLEFHEV--VRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTA 178 (330) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCH--HHHHHHHHH--HHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHH T ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 010541888899999998652365539--999999886--4223776342201012232232699999998872788899 Q ss_pred H-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9-9999999759888999999999999849999986765344320 Q gi|254781111|r 191 F-ACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 191 ~-~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) + |+.+|++++|.++. +.+.+||.++|++|||+||++|++||. T Consensus 179 ~~~~~~ga~~ag~~~~--~~l~~~g~~lG~afQi~DDlld~~~~~ 221 (330) T 1wmw_A 179 VAPLRLGALLAGKTPP--AAYEEGGLRLGTAFQIVDDVLNLEGGE 221 (330) T ss_dssp HHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHHHHHHHSCSC T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8799988766011257--899999998778999757878753006 No 34 >3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis} Probab=100.00 E-value=0 Score=328.59 Aligned_cols=208 Identities=27% Similarity=0.355 Sum_probs=165.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999997675302457157999998750-5860079999999999617882-222402468888999998647765 Q gi|254781111|r 16 IDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNH-LTALRVGAAIECIHCYSLIHDDLP 93 (237) Q Consensus 16 id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~-~~~~~~AaavEllH~asLihDDI~ 93 (237) |+..+..+.......+.. .++.+.++++|.+ .||||+||.+++++++++++.. +.+.++|+++|++|+|||||||| T Consensus 14 i~~~l~~v~~~l~~~~~~-~~~~l~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~A~aiEllH~asLIhDDI- 91 (335) T 3n3d_A 14 VEPQLTALQDYLLRTVQL-DNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDV- 91 (335) T ss_dssp THHHHHHHHHHHHHHCCC-SCHHHHHHHHHHHHTCTTCHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHH- T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC- T ss_conf 999999999999987078-866899999999958985589999999998769997788999999999999999984675- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH---H Q ss_conf 4453223445566543243452013322223347999973102341267888887653222356641133222100---0 Q gi|254781111|r 94 SMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD---E 170 (237) Q Consensus 94 ~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~---~ 170 (237) ||+|++|||+||+|.+||++.|||+||+|++.+|+.+...... ..... .++.+. ..++.||..++.. . T Consensus 92 -~D~s~~RRg~p~~~~~~g~~~Ail~gd~l~~~a~~~~~~~~~~--~~~~~----~~~~~~--~~~~~g~~~~~~~~~~~ 162 (335) T 3n3d_A 92 -IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTD--RSLIQ----NHIDAM--HRILQGELHQMDLNYRE 162 (335) T ss_dssp -HTTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHH----HHHHHH--HHHHHHHHHHHHTTTCT T ss_pred -CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHH----HHHHHH--HHHHHHHHHHHHHCCCC T ss_conf -4799877885332000008899997539999999840000001--79999----999988--99987789998750277 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 171 FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 171 ~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) .+++++|+.++.+|||+||.++|.+|+++++++++....+.+||.++|++|||+||++|++||. T Consensus 163 ~~~~~~y~~~i~~KT~~l~~~~~~~ga~~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~ 226 (335) T 3n3d_A 163 DITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDP 226 (335) T ss_dssp TCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 8899999999998688899999998774102425777999998777788988756765324887 No 35 >1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} SCOP: a.128.1.2 Probab=93.17 E-value=0.37 Score=24.82 Aligned_cols=75 Identities=12% Similarity=-0.041 Sum_probs=51.1 Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4113322210000003679999999863489999999999759888999999999999849999986765344320 Q gi|254781111|r 159 MLGGQMLDIQDEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL 234 (237) Q Consensus 159 l~~GQ~~dl~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~ 234 (237) +..|+..+......|++++.+-+.+--|....+.+.+-.. .+.+.........++..+|+++|+.+=+-|+-.|. T Consensus 120 m~~~m~d~~~~~~~t~~dL~~Ycy~VAg~VG~~l~~l~~~-~~~~~~~~~~~~~~a~~lG~alQltNilRD~~eD~ 194 (340) T 1ezf_A 120 MGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSA-SEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQ 194 (340) T ss_dssp HHHHHHHHHTSCCCSHHHHHHHHHHHTHHHHHHHHHHHHH-HTSSCHHHHHCHHHHHHHHHHHHHHHHHHTHHHHH T ss_pred HHCCHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7253898736767988999999987551699999999567-77653006889999999999999998998339999 No 36 >2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* Probab=93.14 E-value=0.28 Score=25.52 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=48.7 Q ss_pred HHHCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 6411332221000-00036799999998634899999999997598889999999999998499999867653443206 Q gi|254781111|r 158 GMLGGQMLDIQDE-FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDLP 235 (237) Q Consensus 158 ~l~~GQ~~dl~~~-~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~~ 235 (237) .++.|+..|+... ..|++++..-+.+-.|+...+.+. ++++.+++ ....++..+|+++|+.+=+-|+-.|.. T Consensus 112 ~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~l~~~---il~~~~~~---~~~~~A~~lG~AlQltNiLRDi~eD~~ 184 (293) T 2zco_A 112 NLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTP---ILSDHETH---QTYDVARRLGESLQLINILRDVGEDFE 184 (293) T ss_dssp HHHHHHHHGGGCCCCSSHHHHHHHHHHHTHHHHHHHHH---HHCSSCCH---HHHHHHHHHHHHHHHHHHHHCHHHHHH T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHH---HHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999998624356899999999987130219999999---96152200---279999999999999999971598997 No 37 >3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Probab=70.32 E-value=4.7 Score=18.30 Aligned_cols=74 Identities=4% Similarity=-0.043 Sum_probs=48.0 Q ss_pred HCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1133222100----000036799999998634899999999997598889--9999999999984999998676534432 Q gi|254781111|r 160 LGGQMLDIQD----EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQN--EKERLRCFGENLGIIFQLADDLLDCEED 233 (237) Q Consensus 160 ~~GQ~~dl~~----~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~--~~~~l~~~g~~lGiafQi~DD~lD~~~D 233 (237) +.|+..+..+ ..++.++|+.+-+.-+|..+.+.+.--+.-...+++ ....+.++-...+...-+.|||.-+.-+ T Consensus 190 ~~a~~~Ea~~r~~g~vPsl~eYl~~R~~t~g~~~~~~l~e~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDi~S~~KE 269 (382) T 3kb9_A 190 IEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKE 269 (382) T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999998769999999999998886557899999999848988999881831789999999999999998898876 No 38 >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Probab=47.63 E-value=4.4 Score=18.47 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCC Q ss_conf 4532234455665432434520 Q gi|254781111|r 95 MDNGYIRRGKPTVHIQYDEVTA 116 (237) Q Consensus 95 ~D~s~~RRG~pt~h~~~G~~~A 116 (237) +-.+|+|||..|.|-+-|+.+| T Consensus 44 IrRsPlRRGa~TlW~v~~E~~~ 65 (81) T 2htj_A 44 VQRSPLRRGMATYWFLKGEKQA 65 (81) T ss_dssp EEEECCSSSSSCEEEESSCSSS T ss_pred EECCCCCCCHHHHHHHHHHHHC T ss_conf 1048500006999999734541 No 39 >1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Probab=45.57 E-value=13 Score=15.72 Aligned_cols=74 Identities=9% Similarity=0.076 Sum_probs=47.6 Q ss_pred HCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1133222100-----000036799999998634899999999997598889--999999999998499999867653443 Q gi|254781111|r 160 LGGQMLDIQD-----EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQN--EKERLRCFGENLGIIFQLADDLLDCEE 232 (237) Q Consensus 160 ~~GQ~~dl~~-----~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~--~~~~l~~~g~~lGiafQi~DD~lD~~~ 232 (237) +.++..+..+ ..+|.++|+.+-..-+|..+...+..-+.--..+++ ....+.++-+..+...-+.+|+..+.- T Consensus 147 ~~~~~~e~~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~K 226 (337) T 1ps1_A 147 FDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASLEK 226 (337) T ss_dssp HHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHH T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999975048889999999999997123689999999986998899998481259999999999989888888888 Q ss_pred H Q ss_conf 2 Q gi|254781111|r 233 D 233 (237) Q Consensus 233 D 233 (237) + T Consensus 227 E 227 (337) T 1ps1_A 227 E 227 (337) T ss_dssp H T ss_pred H T ss_conf 8 No 40 >3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Probab=32.31 E-value=21 Score=14.47 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=44.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 000003679999999863489999999999759888999999999999849999986765344 Q gi|254781111|r 169 DEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCE 231 (237) Q Consensus 169 ~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~ 231 (237) ...++.++|+.+-+.-+|..+.+++.--+.--..+++....++++-+..+..-=+.+|+.-+. T Consensus 163 ~~~psl~eY~~~R~~~~g~~~~~~l~e~~~~~~l~~~~~~~~~~l~~~~~~~~~l~NDl~S~~ 225 (320) T 3bny_A 163 ARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYE 225 (320) T ss_dssp CCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 789899999999987255889999999975799988999999999999999999984898999 No 41 >2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A Probab=28.79 E-value=24 Score=14.11 Aligned_cols=55 Identities=7% Similarity=0.067 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHH Q ss_conf 0367999999986348999999999975988899999999-99998499999867653 Q gi|254781111|r 173 DETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRC-FGENLGIIFQLADDLLD 229 (237) Q Consensus 173 ~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~-~g~~lGiafQi~DD~lD 229 (237) +...+.++++.|--+ -+.-..+.|+.-|+.+.+.+.+-. .|.+ --+-|+.+|.++ T Consensus 18 tLnaWVKvvEEk~fs-pEvipmFsALSegatP~Dln~mLn~vGgh-qaamQ~lkd~In 73 (144) T 2wlv_A 18 TLNAWVKLVEEKKFG-AEVVPGFQALSEGCTPYDINQMLNCVGDH-QAAMQIIREIIN 73 (144) T ss_dssp HHHHHHHHHHHHTSC-TTHHHHHHHHTTTCCHHHHHHHHHTTTTC-HHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCC-HHHHHHHHHHCCCCCHHHHHHHHCCCCCH-HHHHHHHHHHHH T ss_conf 899999999962788-46767789844999879999986005771-999999999871 No 42 >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} PDB: 2xba_A* 2xb7_A* Probab=23.56 E-value=13 Score=15.65 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=18.9 Q ss_pred CCCHHHHHHHHHHHHHHHCCCC Q ss_conf 2402468888999998647765 Q gi|254781111|r 72 ALRVGAAIECIHCYSLIHDDLP 93 (237) Q Consensus 72 ~~~~AaavEllH~asLihDDI~ 93 (237) +..+|.+++.+|....||-||. T Consensus 187 ~~qia~gL~yLH~~~IvHrDLK 208 (367) T 3l9p_A 187 ARDIACGCQYLEENHFIHRDIA 208 (367) T ss_dssp HHHHHHHHHHHHHTTCCCSCCC T ss_pred HHHHHHHHHHHHHCCCEECCCC T ss_conf 9999999999997891526566 No 43 >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Probab=22.76 E-value=14 Score=15.48 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=19.7 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 22402468888999998647765 Q gi|254781111|r 71 TALRVGAAIECIHCYSLIHDDLP 93 (237) Q Consensus 71 ~~~~~AaavEllH~asLihDDI~ 93 (237) -+..+|.+++.+|.--+||-||. T Consensus 368 ~~~qia~gl~yLH~~~iiHrDLk 390 (535) T 2h8h_A 368 MAAQIASGMAYVERMNYVHRDLR 390 (535) T ss_dssp HHHHHHHHHHHHHHTTCCCSCCS T ss_pred HHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999999999985898467486 No 44 >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphoprotein, RNA-binding, ATP-binding; 3.50A {Mus musculus} Probab=21.53 E-value=33 Score=13.29 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHHHHHHH---------HHH-HCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC Q ss_conf 999999999999999976---------753-02457157999998750586007999999999961 Q gi|254781111|r 10 QENSKRIDTILDDLLLQT---------ASH-MQTQHNDRLLSAIRYALLGGKKIRSFLVTECASLF 65 (237) Q Consensus 10 ~~~~~~id~~l~~~l~~~---------~~~-~~~~~~~~l~~~~~y~l~gGKr~R~~l~l~~~~~~ 65 (237) .++.++++.++++|+..- ... .+..++..+...+..++-.+-+-|-+...+...+. T Consensus 51 ee~kkk~~~ii~EYf~~~D~~Ea~~~l~EL~~~~~~~~~V~~~I~~Aldrk~~eRE~~s~LLs~L~ 116 (358) T 3eiq_C 51 TAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358) T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 999999999999997179999999999984882115999999999987488889999999999998 No 45 >2pwo_A GAG-POL polyprotein (PR160GAG-POL); viral capsid, HIV-1, anti-viral, viral protein; 1.45A {Human immunodeficiency virus 1} PDB: 2pwm_A 2gon_A 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 2x2d_D* 1ak4_C 2jpr_A* 1m9e_C 1m9y_C 1m9f_C 1m9x_C 1m9d_C 1fgl_B Probab=20.96 E-value=34 Score=13.22 Aligned_cols=55 Identities=9% Similarity=0.043 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHH Q ss_conf 036799999998634899999999997598889999999-999998499999867653 Q gi|254781111|r 173 DETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLR-CFGENLGIIFQLADDLLD 229 (237) Q Consensus 173 ~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~-~~g~~lGiafQi~DD~lD 229 (237) +...+.++++.|--+ -+.-..+.|+.-|+.+.+++.+- ..|.+-| +.|+.+|.++ T Consensus 19 tLnaWVKvveEk~f~-pEvIpmFsALSegatP~DlN~mLn~vgghqa-amQ~lkd~In 74 (146) T 2pwo_A 19 TLNAWVKVVEEKAFS-PEVIPMFSALSEGATPQDLNTMLNTVGGHQA-AMQMLKETIN 74 (146) T ss_dssp HHHHHHHHHHHHTTS-TTHHHHHHHHTTTCCHHHHHHHHTTCCSCHH-HHHHHHHHHH T ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHCCCCCHHHHHHHHHHCCCCHH-HHHHHHHHHH T ss_conf 899999999860578-2120689997189875989999986467288-9999999987 No 46 >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 1yoj_A 1yom_A* 3dqw_A* 3g6h_A* ... Probab=20.60 E-value=15 Score=15.39 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=19.7 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 22402468888999998647765 Q gi|254781111|r 71 TALRVGAAIECIHCYSLIHDDLP 93 (237) Q Consensus 71 ~~~~~AaavEllH~asLihDDI~ 93 (237) -+..+|.+++.+|.--.||-||. T Consensus 285 i~~qia~gl~yLH~~~iiHRDLk 307 (452) T 1fmk_A 285 MAAQIASGMAYVERMNYVHRDLR 307 (452) T ss_dssp HHHHHHHHHHHHHHTTCCCSCCS T ss_pred HHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999999999985898457644 No 47 >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Probab=20.57 E-value=17 Score=14.97 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=21.7 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 24024688889999986477654453223 Q gi|254781111|r 72 ALRVGAAIECIHCYSLIHDDLPSMDNGYI 100 (237) Q Consensus 72 ~~~~AaavEllH~asLihDDI~~~D~s~~ 100 (237) +.+++.+++.+|..-.||-||- -+|=-+ T Consensus 217 ~~qi~~aL~ylH~~givHRDLK-P~NiLl 244 (413) T 3dzo_A 217 TLQVIRLLASLHHYGLVHTYLR-PVDIVL 244 (413) T ss_dssp HHHHHHHHHHHHHTTEECSCCC-GGGEEE T ss_pred HHHHHHHHHHHHHCCCEECCCC-HHHEEE T ss_conf 9999999999998893546357-888666 No 48 >3kfa_A V-ABL, tyrosine-protein kinase transforming protein ABL; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene; HET: B91; 1.22A {Abelson murine leukemia virus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 2g1t_A* 2hiw_A* 2v7a_A* 2f4j_A* 2g2h_A* 2g2f_A* 2g2i_A* ... Probab=20.21 E-value=24 Score=14.19 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=20.8 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 240246888899999864776544532 Q gi|254781111|r 72 ALRVGAAIECIHCYSLIHDDLPSMDNG 98 (237) Q Consensus 72 ~~~~AaavEllH~asLihDDI~~~D~s 98 (237) +..+|.+++.+|.--.||-||. -+|= T Consensus 117 ~~qi~~gl~yLH~~~iiHrDlK-p~NI 142 (288) T 3kfa_A 117 ATQISSAMEYLEKKNFIHRDLA-ARNC 142 (288) T ss_dssp HHHHHHHHHHHHHHTCCCSCCS-GGGE T ss_pred HHHHHHHHHHHHCCCCCCCCCC-HHHE T ss_conf 9999999999831995168887-7887 No 49 >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 2ogv_A 3lco_A* Probab=20.21 E-value=19 Score=14.75 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.7 Q ss_pred CCCHHHHHHHHHHHHHHHCCCC Q ss_conf 2402468888999998647765 Q gi|254781111|r 72 ALRVGAAIECIHCYSLIHDDLP 93 (237) Q Consensus 72 ~~~~AaavEllH~asLihDDI~ 93 (237) +..+|.+++.+|.--.||-||. T Consensus 170 ~~qia~gl~ylH~~~IiHRDLK 191 (333) T 2i1m_A 170 SSQVAQGMAFLASKNCIHRDVA 191 (333) T ss_dssp HHHHHHHHHHHHHTTEECSCCS T ss_pred HHHHHHHHHHHHCCCEEECCCC T ss_conf 9999999988760993526676 No 50 >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 1k2p_A Probab=20.19 E-value=21 Score=14.46 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.4 Q ss_pred CCCHHHHHHHHHHHHHHHCCCC Q ss_conf 2402468888999998647765 Q gi|254781111|r 72 ALRVGAAIECIHCYSLIHDDLP 93 (237) Q Consensus 72 ~~~~AaavEllH~asLihDDI~ 93 (237) +..+|.+++.+|.--.||-||. T Consensus 126 ~~qia~gl~yLH~~~iiHrDlK 147 (283) T 3gen_A 126 CKDVCEAMEYLESKQFLHRDLA 147 (283) T ss_dssp HHHHHHHHHHHHHTTCCCSSCS T ss_pred HHHHHHHHHHHHHCCEEECCCC T ss_conf 9999999998864882106676 Done!