Query         gi|254781111|ref|YP_003065524.1| geranyltranstransferase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 237
No_of_seqs    116 out of 4447
Neff          7.4 
Searched_HMMs 23785
Date          Wed Jun  1 00:56:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781111.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2h8o_A Geranyltranstransferase 100.0       0       0  396.3  16.8  232    3-234    37-271 (335)
  2 1rqj_A Geranyltranstransferase 100.0       0       0  375.4  16.9  229    4-237     2-238 (299)
  3 3p8l_A Geranyltranstransferase 100.0       0       0  372.4  16.9  224    3-234     8-235 (302)
  4 3pde_A Farnesyl-diphosphate sy 100.0       0       0  370.0  15.8  226    1-234     4-234 (309)
  5 1wy0_A Geranylgeranyl pyrophos 100.0       0       0  366.2  17.2  220    9-234     4-227 (342)
  6 2j1p_A Geranylgeranyl pyrophos 100.0       0       0  363.1  18.5  220    8-234    16-242 (293)
  7 3npk_A Geranyltranstransferase 100.0       0       0  365.2  15.2  198   35-234    23-224 (291)
  8 3nf2_A Putative polyprenyl syn 100.0       0       0  360.3  17.1  220    1-236     1-238 (352)
  9 1rtr_A Geranyltranstransferase 100.0       0       0  361.9  15.7  218   10-234     7-227 (301)
 10 3p8r_A Geranyltranstransferase 100.0       0       0  362.8  14.6  223    7-234    11-238 (302)
 11 3lsn_A Geranyltranstransferase 100.0       0       0  359.6  17.4  228    4-236     2-237 (304)
 12 3kra_B Geranyl diphosphate syn 100.0       0       0  357.4  19.2  215    7-229     3-223 (274)
 13 3lmd_A Geranylgeranyl pyrophos 100.0       0       0  358.9  17.3  212    3-234    34-249 (360)
 14 3mzv_A Decaprenyl diphosphate  100.0       0       0  357.7  17.3  212    5-234    14-229 (341)
 15 2e8v_A Geranylgeranyl pyrophos 100.0       0       0  364.0  11.0  213   14-234     4-223 (340)
 16 3ipi_A Geranyltranstransferase 100.0       0       0  356.8  16.5  202   14-234    12-216 (295)
 17 2azj_A Geranylgeranyl pyrophos 100.0       0       0  356.9  16.2  208    4-234    10-217 (289)
 18 3oyr_A Trans-isoprenyl diphosp 100.0       0       0  353.8  18.6  205   18-234    33-241 (345)
 19 3m0g_A Farnesyl diphosphate sy 100.0       0       0  357.1  15.4  220    4-234     2-225 (297)
 20 3lom_A Geranyltranstransferase 100.0       0       0  351.1  17.6  225    5-234     9-239 (313)
 21 3dyh_A Farnesyl pyrophosphate  100.0       0       0  347.5  17.2  193   38-234    57-287 (390)
 22 1uby_A FPS, farnesyl diphospha 100.0       0       0  344.2  19.5  192   37-234    57-266 (367)
 23 2ihi_A Pyrophosphate synthase; 100.0       0       0  353.5  10.9  190   39-234    68-295 (395)
 24 2ftz_A Geranyltranstransferase 100.0       0       0  350.0  13.8  207   11-236    13-227 (284)
 25 2qis_A Farnesyl pyrophosphate  100.0       0       0  342.5  18.2  220    9-234    31-273 (374)
 26 1yhl_A Farnesyl pyrophosphate  100.0       0       0  344.1  15.4  195   36-234    33-259 (362)
 27 2her_A Fragment, farnesyl pyro 100.0       0       0  355.9   4.6  192   38-233    59-262 (368)
 28 3lk5_A Geranylgeranyl pyrophos 100.0       0       0  340.4  15.3  223    8-236    17-271 (380)
 29 3aqb_B Component B of hexapren 100.0       0       0  339.7  15.3  215    3-236     4-225 (325)
 30 3llw_A Geranyltranstransferase 100.0       0       0  336.8  16.7  229    1-234     1-239 (311)
 31 1v4e_A Octoprenyl-diphosphate  100.0       0       0  340.4  12.8  183   41-237    30-218 (299)
 32 2q80_A Geranylgeranyl pyrophos 100.0       0       0  342.5   9.4  185   35-234     9-198 (301)
 33 1wmw_A Geranylgeranyl diphosph 100.0       0       0  332.6  14.4  190   37-234    25-221 (330)
 34 3n3d_A Geranylgeranyl pyrophos 100.0       0       0  328.6  11.9  208   16-234    14-226 (335)
 35 1ezf_A Farnesyl-diphosphate fa  93.2    0.37 1.6E-05   24.8   8.4   75  159-234   120-194 (340)
 36 2zco_A Dehydrosqualene synthas  93.1    0.28 1.2E-05   25.5   6.8   72  158-235   112-184 (293)
 37 3kb9_A EPI-isozizaene synthase  70.3     4.7  0.0002   18.3   6.5   74  160-233   190-269 (382)
 38 2htj_A P fimbrial regulatory p  47.6     4.4 0.00019   18.5   0.7   22   95-116    44-65  (81)
 39 1ps1_A Pentalenene synthase; a  45.6      13 0.00054   15.7   8.5   74  160-233   147-227 (337)
 40 3bny_A Aristolochene synthase;  32.3      21 0.00089   14.5   7.8   63  169-231   163-225 (320)
 41 2wlv_A GAG polyprotein, HIV-2   28.8      24   0.001   14.1   3.8   55  173-229    18-73  (144)
 42 3l9p_A Anaplastic lymphoma kin  23.6      13 0.00056   15.7  -0.1   22   72-93    187-208 (367)
 43 2h8h_A Proto-oncogene tyrosine  22.8      14  0.0006   15.5  -0.1   23   71-93    368-390 (535)
 44 3eiq_C Programmed cell death p  21.5      33  0.0014   13.3   5.2   56   10-65     51-116 (358)
 45 2pwo_A GAG-POL polyprotein (PR  21.0      34  0.0014   13.2   3.1   55  173-229    19-74  (146)
 46 1fmk_A C-SRC, P60-SRC, tyrosin  20.6      15 0.00062   15.4  -0.3   23   71-93    285-307 (452)
 47 3dzo_A Rhoptry kinase domain;   20.6      17 0.00073   15.0   0.0   28   72-100   217-244 (413)
 48 3kfa_A V-ABL, tyrosine-protein  20.2      24 0.00099   14.2   0.6   26   72-98    117-142 (288)
 49 2i1m_A Macrophage colony-stimu  20.2      19  0.0008   14.7   0.2   22   72-93    170-191 (333)
 50 3gen_A Tyrosine-protein kinase  20.2      21 0.00089   14.5   0.4   22   72-93    126-147 (283)

No 1  
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str}
Probab=100.00  E-value=0  Score=396.31  Aligned_cols=232  Identities=47%  Similarity=0.799  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf             348999999999999999999997675302457157999998750-5860079999999999617882222402468888
Q gi|254781111|r    3 GGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIEC   81 (237)
Q Consensus         3 ~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEl   81 (237)
                      .+++.++++..++||+.|++++...........|+.+.++|+|.+ .||||+||.|++++++++|++.+.++++|+|+|+
T Consensus        37 ~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~~~p~~l~~a~~y~~~~GGKrlRp~L~l~~~~~~g~~~~~~~~~AaaiEl  116 (335)
T 2h8o_A           37 TNFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALEC  116 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             67999999999999999998667523444457987899999998626841099999999999829987899999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999864776544532234455665432434520133222233479999731023412678888876532223566411
Q gi|254781111|r   82 IHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLG  161 (237)
Q Consensus        82 lH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (237)
                      +|++||||||||+||+|++|||+||+|++||++.|||+||+|++.+|+++++.............+..+.+..+..+++.
T Consensus       117 iH~aSLIHDDI~~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~i~~l~~~~~~~g~~~  196 (335)
T 2h8o_A          117 LHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAG  196 (335)
T ss_dssp             HHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999997798768876333898650305185999999999999888998851220467888999999999999988864


Q ss_pred             CCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33222100--00003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  162 GQMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       162 GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      ||..+...  ...+++.|.+|+++|||+||.++|.+|+++++++++..+.+.+||.++|++|||+||++|++||.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~i~~~KTg~L~~~a~~~ga~l~~~~~~~~~~l~~~g~~lGlAFQI~DDilD~~gd~  271 (335)
T 2h8o_A          197 GQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA  271 (335)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             688887630454248999876202477989989998898804616799999999986302677555766511898


No 2  
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00  E-value=0  Score=375.42  Aligned_cols=229  Identities=37%  Similarity=0.614  Sum_probs=197.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             48999999999999999999997675302457157999998750-58600799999999996178822224024688889
Q gi|254781111|r    4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECI   82 (237)
Q Consensus         4 ~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEll   82 (237)
                      .|++++++..++|++.+++++...     ....+.+.++++|.+ .||||+||.|++++++++|++.+.++++|+++|++
T Consensus         2 ~~~~~l~~~~~~i~~~l~~~~~~~-----~~~~~~l~e~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEll   76 (299)
T 1rqj_A            2 DFPQQLEACVKQANQALSRFIAPL-----PFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECI   76 (299)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTS-----SSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             849999999999999999987626-----788807999999987179751889999999988099867899999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999864776544532234455665432434520133222233479999731023-412678888876532223566411
Q gi|254781111|r   83 HCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQ-LKDNIRSQLMLSLTHNIGLQGMLG  161 (237)
Q Consensus        83 H~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~  161 (237)
                      |+||||||||+++|+|++|||+||+|.+||++.|||+||+|++.+++++++.... .........+..+..+.+..+++.
T Consensus        77 H~asLIhDDI~D~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  156 (299)
T 1rqj_A           77 HAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCG  156 (299)
T ss_dssp             HHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999980560245221003698501131620666651177889999998578953337899999999999875999999


Q ss_pred             CCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C
Q ss_conf             332221000--000367999999986348999999999975988-8999999999999849999986765344320---6
Q gi|254781111|r  162 GQMLDIQDE--FIDETQVFMIQKMKTGALMCFACESGAIMAHAS-QNEKERLRCFGENLGIIFQLADDLLDCEEDL---P  235 (237)
Q Consensus       162 GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~-~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~  235 (237)
                      ||.+|+.+.  .+++++|++|+++|||+||.+++.+|+++++.. ++..+.+.+||.++|++|||+||++|++||.   |
T Consensus       157 GQ~lDl~~~~~~~~~~~y~~i~~~KTa~l~~~~~~~~a~~~~~~~~~~~~~~~~~g~~lG~afQi~DD~lD~~~~~~~~G  236 (299)
T 1rqj_A          157 GQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLG  236 (299)
T ss_dssp             HHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHC
T ss_conf             99999981178999999999999999999999999889984540568999999988999999985108776228886609


Q ss_pred             CC
Q ss_conf             79
Q gi|254781111|r  236 KK  237 (237)
Q Consensus       236 k~  237 (237)
                      |.
T Consensus       237 K~  238 (299)
T 1rqj_A          237 KR  238 (299)
T ss_dssp             SC
T ss_pred             CC
T ss_conf             96


No 3  
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00  E-value=0  Score=372.35  Aligned_cols=224  Identities=37%  Similarity=0.574  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCC-CCCCHHHHHH
Q ss_conf             348999999999999999999997675302457157999998750-58600799999999996178822-2240246888
Q gi|254781111|r    3 GGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHL-TALRVGAAIE   80 (237)
Q Consensus         3 ~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~-~~~~~AaavE   80 (237)
                      .+|.+.+++....|++.|++++.+.      ..++.+.+++.|.+ .||||+||.|++++++++|++.+ .++++|++||
T Consensus         8 ~~~~~~~~~~~~~v~~~l~~~~~~~------~~~~~l~~~~~y~l~~gGKr~Rp~L~l~~~~~~g~~~~~~~~~~A~avE   81 (302)
T 3p8l_A            8 HSLTNFSQQHLPLVEKVMVDFIAEY------TENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLE   81 (302)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHHHHHS------CCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             2199999999999999999998734------8877899999988708963086999999999839995177899999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999986477654453223445566543243452013322223347999973102341267888887653222356641
Q gi|254781111|r   81 CIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGML  160 (237)
Q Consensus        81 llH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (237)
                      ++|+||||||||+++|+|++|||+||+|.+||++.||++||+|++.+|++++....  ......+.+..++++.+.++++
T Consensus        82 llH~asLIHDDI~d~D~~~~RRg~pt~~~~~G~~~Ail~GD~l~~~a~~ll~~~~~--~~~~~~~~~~~l~~~~~~~~~~  159 (302)
T 3p8l_A           82 MIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQL--GLSEKVLLMQQLAKAAGNQGMV  159 (302)
T ss_dssp             HHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSC--CHHHHHHHHHHHHHHHSTTTHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999788613577754356886010248899998114879999999987037--8179999999999998899999


Q ss_pred             CCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             133222100--00003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  161 GGQMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       161 ~GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      .||.+|+..  ..+++++|++|+++|||+||.+||.+|+++++++++..+.+.+||.++|++|||+||++|++||.
T Consensus       160 ~Gq~~d~~~~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~~~  235 (302)
T 3p8l_A          160 SGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTE  235 (302)
T ss_dssp             HHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             9989998700457989999999997799999999973130048857889999999999888864159878534898


No 4  
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00  E-value=0  Score=369.96  Aligned_cols=226  Identities=32%  Similarity=0.541  Sum_probs=193.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCC--CCCCCCHHH
Q ss_conf             98348999999999999999999997675302457157999998750-586007999999999961788--222240246
Q gi|254781111|r    1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVN--HLTALRVGA   77 (237)
Q Consensus         1 m~~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~--~~~~~~~Aa   77 (237)
                      |+..+.+..+++.++|++.|++.+..      ...+..+.++++|.+ .||||+||.|++++++++|++  ++.++++|+
T Consensus         4 ~~~~l~~f~~~~~~~i~~~l~~~l~~------~~~~~~l~~a~~y~l~~GGKriRp~L~l~~~~~~g~~~~~~~~~~~A~   77 (309)
T 3pde_A            4 INARLIAFEDQWVPALNAPLKQAILA------DSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVM   77 (309)
T ss_dssp             EEHHHHHHHHHHHHHHHTTHHHHHHH------TCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             67999999999999999999998751------699678999999887179440869999999998099977188999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             88889999986477654453223445566543243452013322223347999973102341267888887653222356
Q gi|254781111|r   78 AIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQ  157 (237)
Q Consensus        78 avEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (237)
                      |+|++|++||||||||+||+|++|||+||+|++||++.||++||+|++.+|+++++...  +.......+..+..+.+..
T Consensus        78 avEllH~asLIHDDI~~~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~--~~~~~~~~~~~l~~~~~~~  155 (309)
T 3pde_A           78 ALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDL--PATMQAALVQALATAAGPS  155 (309)
T ss_dssp             HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999858050366555577777134416099998888888789999975010--1377889999999999999


Q ss_pred             HHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             641133222100--00003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  158 GMLGGQMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       158 ~l~~GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      ++..||..|...  ..+++++|..|+++|||+||.++|.+|++++|++++..+.+.+||.++|++|||+||++|++||.
T Consensus       156 ~~~~~~~~d~~~~~~~~~~~~y~~i~~~KTa~l~~~~~~~ga~l~~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~  234 (309)
T 3pde_A          156 GMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSP  234 (309)
T ss_dssp             THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             9984520111001011139999999998888888999999999816618889999987776566788589887623897


No 5  
>1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3}
Probab=100.00  E-value=0  Score=366.22  Aligned_cols=220  Identities=30%  Similarity=0.407  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             999999999999999997675302457157999998750-5860079999999999617882222402468888999998
Q gi|254781111|r    9 LQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSL   87 (237)
Q Consensus         9 l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asL   87 (237)
                      +.+..+++++.++.+-......++...++.+.++++|.+ +||||+||.|++++++++|++++.++++|+++|++|+|||
T Consensus         4 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asL   83 (342)
T 1wy0_A            4 YEELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSL   83 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999999864767828999999988646745489999999999839986889999999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             64776544532234455665432434520133222233479999731023412678888876532223566411332221
Q gi|254781111|r   88 IHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDI  167 (237)
Q Consensus        88 ihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl  167 (237)
                      |||||  +|+|++|||+||+|.+||++.||++||+|++.+|+++++...  ........+..++.+  ...++.||.+|+
T Consensus        84 IHDDi--~D~~~~RRg~~t~~~~~g~~~ail~Gd~l~~~a~~~l~~~~~--~~~~~~~~~~~~~~~--~~~~~~Gq~~dl  157 (342)
T 1wy0_A           84 VHDDI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEI--PPEKKARVLEVIVKA--SNELCEGQARDL  157 (342)
T ss_dssp             HHHHH--HHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCS--CHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_conf             85887--768987689988531005789988899999999999986047--746667889988678--889876265665


Q ss_pred             CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0000---003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  168 QDEF---IDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       168 ~~~~---~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      .+..   .++++|++|+.+|||+||.+||.+|++++|++++..+.+.+||.++|++|||+||++|++||.
T Consensus       158 ~~~~~~~~~~~~y~~ii~~KTa~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~  227 (342)
T 1wy0_A          158 EFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADE  227 (342)
T ss_dssp             HHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             4014689999999999999999999999999999839999999999999999999999855641023887


No 6  
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A*
Probab=100.00  E-value=0  Score=363.05  Aligned_cols=220  Identities=34%  Similarity=0.561  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999999999999999997675302457157999998750-586007999999999961788222240246888899999
Q gi|254781111|r    8 KLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYS   86 (237)
Q Consensus         8 ~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~as   86 (237)
                      .+.+..+.|++.|++.       ++...|..+.++++|.+ .||||+||.|++++++++|++++.++++|+++|++|++|
T Consensus        16 ~~~~~~~~v~~~l~~~-------~~~~~p~~l~~~~~y~~~~GGKrlRp~L~~~~~~~~g~~~~~~~~~a~aiEllH~as   88 (293)
T 2j1p_A           16 YIIRKADSVNKALDSA-------VPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMS   88 (293)
T ss_dssp             HHHHHHHHHHHHHHHH-------SCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999975-------576785679999998983787528899999999980998788999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             864776544532234455665432434520133222233479999731023-4126788888765322235664113322
Q gi|254781111|r   87 LIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQ-LKDNIRSQLMLSLTHNIGLQGMLGGQML  165 (237)
Q Consensus        87 LihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~GQ~~  165 (237)
                      ||||||+++|+|++|||+||+|++||++.||++||+|+++++++++..... .........+..+++..+..+++.||..
T Consensus        89 LIHDDI~d~D~s~~RRG~pt~h~~~g~~~Ail~GD~l~~~a~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  168 (293)
T 2j1p_A           89 LIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVV  168 (293)
T ss_dssp             HHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98827744678887787265888728404356432899999999876135545789999999999999999999999999


Q ss_pred             CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2100-----00003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  166 DIQD-----EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       166 dl~~-----~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      ++..     ...+++.|..|+.+|||+||.++|.+||+++|++++..+.+.+||.++|+||||+||++|++||.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~i~~~KTa~l~~~~~~~gaila~~~~~~~~~l~~~G~~lGiAFQI~DDilD~~~d~  242 (293)
T 2j1p_A          169 DISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS  242 (293)
T ss_dssp             TTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf             88764113456789999999999889999999999897729999999999999857003443340444410697


No 7  
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00  E-value=0  Score=365.25  Aligned_cols=198  Identities=36%  Similarity=0.531  Sum_probs=175.1

Q ss_pred             CCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7157999998750-5860079999999999617882-2224024688889999986477654453223445566543243
Q gi|254781111|r   35 HNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNH-LTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYD  112 (237)
Q Consensus        35 ~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~-~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G  112 (237)
                      .++.+.++++|.+ .||||+||.|+++++++++++. +.++++|+++|++|+||||||||||||+|++|||+||+|.+||
T Consensus        23 ~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiEllH~asLiHDDI~~mD~s~~RRG~pt~h~~~G  102 (291)
T 3npk_A           23 FHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYD  102 (291)
T ss_dssp             SCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTC
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             67479999999985898538799999999985997368999999999999999999728703468744589876434320


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf             4520133222233479999731023412678888876532223566411332221000--00036799999998634899
Q gi|254781111|r  113 EVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE--FIDETQVFMIQKMKTGALMC  190 (237)
Q Consensus       113 ~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~  190 (237)
                      ++.||++||+|++.+|+++++.....  ......+.....+.+..+++.||.+|+...  ..++++|..|+.+|||+||.
T Consensus       103 ~~~Ail~Gd~L~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gq~~d~~~~~~~~~~~~y~~i~~~KTa~lf~  180 (291)
T 3npk_A          103 ETTAILVGDALNTEAFLVLSHAHLKD--EIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIA  180 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSCH--HHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             67999807298898988877640014--6889999999998899999988899998750578799999999998885898


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999759888999999999999849999986765344320
Q gi|254781111|r  191 FACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       191 ~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      +||.+||++++++++..+.+.+||.++|+||||+||++|++||.
T Consensus       181 ~~~~~ga~~~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~gd~  224 (291)
T 3npk_A          181 AALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQ  224 (291)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             99999999847999999999989998888877379988633888


No 8  
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00  E-value=0  Score=360.33  Aligned_cols=220  Identities=27%  Similarity=0.363  Sum_probs=187.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC------------CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             98348999999999999999999997675302457157999998750------------586007999999999961788
Q gi|254781111|r    1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL------------LGGKKIRSFLVTECASLFNVN   68 (237)
Q Consensus         1 m~~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l------------~gGKr~R~~l~l~~~~~~~~~   68 (237)
                      |+-.+.+.|.+.+..|+..|.+.+...        ++.+.+++.|.+            .||||+||.|++++++++|++
T Consensus         1 ~~~d~~~~l~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~GGKr~Rp~l~l~~~~~~g~~   72 (352)
T 3nf2_A            1 MSLDVTALLERGRTLATPVLRAAVDRL--------APPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAA   72 (352)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHTS--------CTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             988899999999999999999998545--------824899999761012220472767897359999999999981988


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             22224024688889999986477654453223445566543243452013322223347999973102341267888887
Q gi|254781111|r   69 HLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLML  148 (237)
Q Consensus        69 ~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~  148 (237)
                      ++.++++|+++|++|+||||||||  ||+|++|||+||+|.+||++.|||+||+|++.+|+++++........    ...
T Consensus        73 ~~~~~~~A~aiEllH~asLIHDDi--~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~----~~~  146 (352)
T 3nf2_A           73 PEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGR----ATR  146 (352)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHH----HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HHH
T ss_conf             578999999999999999995877--67997779880603345879999972248999999998646531046----777


Q ss_pred             HHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6532223566411332221000---0003679999999863489999999999759888999999999999849999986
Q gi|254781111|r  149 SLTHNIGLQGMLGGQMLDIQDE---FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLAD  225 (237)
Q Consensus       149 ~~~~~~~~~~l~~GQ~~dl~~~---~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~D  225 (237)
                      .+...  ...++.||.+|+...   ..++++|++|+.+|||+||.+||.+|+++++++++..+.+.+||.++|++|||+|
T Consensus       147 ~~~~~--~~~~~~gq~~d~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~~a~~~~~~~~~l~~~g~~lGiaFQi~D  224 (352)
T 3nf2_A          147 RLTKA--SRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVD  224 (352)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67765--0312253069998776023569999999986789999999998775412659999999999999999998634


Q ss_pred             HHHHHHHH---HCC
Q ss_conf             76534432---067
Q gi|254781111|r  226 DLLDCEED---LPK  236 (237)
Q Consensus       226 D~lD~~~D---~~k  236 (237)
                      |++|++||   .||
T Consensus       225 DilD~~~~~~~~GK  238 (352)
T 3nf2_A          225 DLLGIWGDPDATGK  238 (352)
T ss_dssp             HHHHHHCCHHHHSS
T ss_pred             HHHHCCCCHHHHCC
T ss_conf             34420388367598


No 9  
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00  E-value=0  Score=361.87  Aligned_cols=218  Identities=41%  Similarity=0.606  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999999997675302457157999998750-58600799999999996178822224024688889999986
Q gi|254781111|r   10 QENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLI   88 (237)
Q Consensus        10 ~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLi   88 (237)
                      .+..++|++.|+..+.+      ...++.+.++++|.+ .||||+||.|++++++++|++.+.++++|+++|++|+||||
T Consensus         7 ~~~~~~i~~~l~~~~~~------~~~~~~l~~~~~y~l~~GGKr~Rp~L~l~~~~~~~~~~~~~~~~A~aiEllH~asLI   80 (301)
T 1rtr_A            7 NKLIDEVNNELSVAINK------SVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLI   80 (301)
T ss_dssp             HHHHHHHHHHHHTSSCC------CSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998611------358878999999887399747869999999988499758899999999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             47765445322344556654324345201332222334799997310234126788888765322235664113322210
Q gi|254781111|r   89 HDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQ  168 (237)
Q Consensus        89 hDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~  168 (237)
                      ||||+++|+++.|||+||+|.+||++.||++||+|++.+|++++....... .........+..+.+..+++.||.+|+.
T Consensus        81 hDDI~D~d~~~~RRg~~~~~~~~g~~~ail~gd~l~~~a~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~GQ~lDl~  159 (301)
T 1rtr_A           81 HDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTD-EVKIKVLQRLSIASGHVGMVGGQMLDMQ  159 (301)
T ss_dssp             HHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCH-HHHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             727733587742245654788752131265377178899999985343027-8999999999998659999876999998


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00--0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  169 DE--FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       169 ~~--~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      ..  ..+++.|..|+++|||+||.+|+.+|+++++++++..+.+.+||.++|++|||+||++|++||.
T Consensus       160 ~~~~~~~~~~y~~i~~~KT~~l~~~~~~~ga~l~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~  227 (301)
T 1rtr_A          160 SEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE  227 (301)
T ss_dssp             TTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCH
T ss_conf             24899999999999999999999999999998715737779999999987221012230887734888


No 10 
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae}
Probab=100.00  E-value=0  Score=362.81  Aligned_cols=223  Identities=38%  Similarity=0.584  Sum_probs=186.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999999999997675302457157999998750-58600799999999996178822224024688889999
Q gi|254781111|r    7 SKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCY   85 (237)
Q Consensus         7 ~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~a   85 (237)
                      +.|+++++++++.+++++...    + .....+.++++|.+ .||||+||.|++++++++|++.+.+.++|+|||++|+|
T Consensus        11 e~l~~~~~~~~~~l~~~l~~~----~-~~~~~l~ea~~y~l~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH~a   85 (302)
T 3p8r_A           11 EALSSYQQRNNQQLDQWLNRI----P-FQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAY   85 (302)
T ss_dssp             THHHHHHHHHHHHHHHHHHTC----S-CTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999998627----8-99853999999885288004999999999998099846668999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9864776544532234455665432434520133222233479999731023412-678888876532223566411332
Q gi|254781111|r   86 SLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKD-NIRSQLMLSLTHNIGLQGMLGGQM  164 (237)
Q Consensus        86 sLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~GQ~  164 (237)
                      |||||||+++|+|++|||+||+|.+||++.|||+||+|++.+|+++++....... .........+....+..+++.||.
T Consensus        86 sLIHDDi~D~d~~~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  165 (302)
T 3p8r_A           86 SLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQA  165 (302)
T ss_dssp             HHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99841673456321015888610024839999997899988999987336542117889999999999999999999999


Q ss_pred             CCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             22100--000036799999998634899999999997598-88999999999999849999986765344320
Q gi|254781111|r  165 LDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHA-SQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       165 ~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~-~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      .+...  +.+++++|..|+.+|||+||.++|.+|+++++. +++..+.+.+||+++|++|||+||++|++||.
T Consensus       166 ~~~~~~~~~~s~~~y~~~~~~KT~~l~~~~~~~~~~l~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~g~~  238 (302)
T 3p8r_A          166 LDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDT  238 (302)
T ss_dssp             HHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             9862236789999999999999989999999988875057756789999998899886788975876602886


No 11 
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A*
Probab=100.00  E-value=0  Score=359.62  Aligned_cols=228  Identities=34%  Similarity=0.578  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             48999999999999999999997675302457157999998750-58600799999999996178822224024688889
Q gi|254781111|r    4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECI   82 (237)
Q Consensus         4 ~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEll   82 (237)
                      .+++.+.....+||..+++++...     ....+.+.++++|.+ .||||+||.|++++++++|++++.++++|+++|++
T Consensus         2 ~l~~~~~~~~~~id~~l~~~~~~~-----~~~~~~l~e~~~y~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~aiEll   76 (304)
T 3lsn_A            2 SLTAYQASSQARVDAAMHTLFTAP-----SPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELI   76 (304)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGCCS-----SGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             868999999999999999860558-----973578999999884498205999999999998499989999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999986477654453223445566543243452013322223347999973102341-2678888876532223566411
Q gi|254781111|r   83 HCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLK-DNIRSQLMLSLTHNIGLQGMLG  161 (237)
Q Consensus        83 H~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~  161 (237)
                      |+||||||||+++|+|++|||+||+|.+||++.|||+||+|++.+|+++.+...... ...............+..++..
T Consensus        77 H~asLiHDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  156 (304)
T 3lsn_A           77 HAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVG  156 (304)
T ss_dssp             HHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999961775567777789877754444519999987999997999850423220179999998789999988999987


Q ss_pred             CCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C
Q ss_conf             33222100--00003679999999863489999999999759-888999999999999849999986765344320---6
Q gi|254781111|r  162 GQMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAH-ASQNEKERLRCFGENLGIIFQLADDLLDCEEDL---P  235 (237)
Q Consensus       162 GQ~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~  235 (237)
                      +|..+...  ...++++|.+|++.|||+||.++|.+|+++++ .+++..+.+.+||.++|++|||+||++|++||.   |
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~i~~~KT~~l~~~~~~~~~~~a~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~g~~~~~G  236 (304)
T 3lsn_A          157 GQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLG  236 (304)
T ss_dssp             HHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf             68888752102455699999999998999999999999985654067999999999999999999999876228965519


Q ss_pred             C
Q ss_conf             7
Q gi|254781111|r  236 K  236 (237)
Q Consensus       236 k  236 (237)
                      |
T Consensus       237 K  237 (304)
T 3lsn_A          237 K  237 (304)
T ss_dssp             -
T ss_pred             C
T ss_conf             8


No 12 
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B*
Probab=100.00  E-value=0  Score=357.41  Aligned_cols=215  Identities=18%  Similarity=0.308  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999999999997675302457157999998750-58600799999999996178822224024688889999
Q gi|254781111|r    7 SKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCY   85 (237)
Q Consensus         7 ~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~a   85 (237)
                      ..++.....|++.|++.       ++...|..+.++++|.+ .||||+||.|++++|+++|++++.++++|+++|++|+|
T Consensus         3 ~y~~~i~~~i~~~l~~~-------~~~~~~~~l~~~~~~~~~~gGKr~Rp~L~l~~~~~~gg~~~~~l~~AaaiEliH~a   75 (274)
T 3kra_B            3 PYWAAIEADIERYLKKS-------ITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAA   75 (274)
T ss_dssp             HHHHHHHHHHHHHHHHH-------CCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999976-------57689588999999998478862999999999999397999998999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98647765445322344556654324345201332222334799997310234---126788888765322235664113
Q gi|254781111|r   86 SLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQL---KDNIRSQLMLSLTHNIGLQGMLGG  162 (237)
Q Consensus        86 sLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~G  162 (237)
                      |||||||+ +|++++|||+||+|.+||++.|||+||+|++.+|+++++.....   ......+.+..++++++..+++.|
T Consensus        76 sLIHDDI~-ddd~~~RRG~pt~h~~~G~~~AIl~GD~L~~~af~~la~~~~~~~~~~~~~~~~~i~~ls~~~~~~g~~~G  154 (274)
T 3kra_B           76 AYVHEHLP-LTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISG  154 (274)
T ss_dssp             HHHHHTCC-CSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHH
T ss_pred             HHHHCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99981776-56532248999855564839999999999988999998558841024589999999999987768888712


Q ss_pred             CCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3222100--000036799999998634899999999997598889999999999998499999867653
Q gi|254781111|r  163 QMLDIQD--EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLD  229 (237)
Q Consensus       163 Q~~dl~~--~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD  229 (237)
                      |.+|+..  ..++++.|..|+++|||+||++||++|++++|++++.++.+++||+++|++|||.||..+
T Consensus       155 q~~d~~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~gailag~~~~~~~~l~~~G~~lGi~~qi~dd~~a  223 (274)
T 3kra_B          155 LHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNS  223 (274)
T ss_dssp             HHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             589988406777789999999864539999999999998193999999999999995887322466535


No 13 
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
Probab=100.00  E-value=0  Score=358.88  Aligned_cols=212  Identities=25%  Similarity=0.398  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCC-CCCCCCHHHHHH
Q ss_conf             348999999999999999999997675302457157999998750-586007999999999961788-222240246888
Q gi|254781111|r    3 GGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVN-HLTALRVGAAIE   80 (237)
Q Consensus         3 ~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~-~~~~~~~AaavE   80 (237)
                      ..+++.+.+..++|++.+.+.+       .. ..+.+.++..|.+ .||||+||.|+++++++++++ .+.++++|+++|
T Consensus        34 ~~l~~~i~~~l~~ve~~l~~~l-------~~-~~~~l~~~~~~~~~~GGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiE  105 (360)
T 3lmd_A           34 PELTARINDAMVQVEELLHTEL-------SS-GEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVE  105 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------TC-SCHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------CC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             8999999999999999999882-------68-844799999998708961699999999999829993588999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999986477654453223445566543243452013322223347999973102341267888887653222356641
Q gi|254781111|r   81 CIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGML  160 (237)
Q Consensus        81 llH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (237)
                      ++|+||||||||  ||+|++|||+||+|.+||+..||++||||++.+++++++....        .+..+.++  ...++
T Consensus       106 llH~asLiHDDI--~D~s~~RRG~pt~~~~~g~~~ail~GD~l~~~a~~~~~~~~~~--------~~~~~~~~--~~~~~  173 (360)
T 3lmd_A          106 ITHLATLYHDDV--MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGTD--------TVAHFAET--FGELV  173 (360)
T ss_dssp             HHHHHHHHHHHH--HC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCH--------HHHHHHHH--HHHHH
T ss_conf             999999995686--8899999998751333574253340648789999998602403--------55888887--68988


Q ss_pred             CCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1332221000--0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  161 GGQMLDIQDE--FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       161 ~GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      .||.+|+.+.  ..+.++|++|+.+|||+||.++|.+|++++|++++..+.+.+||+++|++|||+||++|+++|.
T Consensus       174 ~GQ~~dl~~~~~~~~~e~y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~  249 (360)
T 3lmd_A          174 TGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSET  249 (360)
T ss_dssp             HHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             7778987465666879999999999999999999999999829899999999999999999999877865312885


No 14 
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00  E-value=0  Score=357.66  Aligned_cols=212  Identities=27%  Similarity=0.485  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             8999999999999999999997675302457157999998750-586007999999999961788222240246888899
Q gi|254781111|r    5 LPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIH   83 (237)
Q Consensus         5 l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH   83 (237)
                      +.+.+++....|+..|.+       .+.+...+.+.++.+|.+ .||||+||.|++++++++|++++.++++|+++|++|
T Consensus        14 l~~~l~~~l~~v~~~i~~-------~l~s~~~~~i~~~~~~~~~~gGKr~Rp~l~ll~~~~~~~~~~~~~~~A~aiEliH   86 (341)
T 3mzv_A           14 LAQALAEDMAAVNALIRE-------RMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIH   86 (341)
T ss_dssp             HHHHTHHHHHHHHHHHHH-------HSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             999999999999999999-------8444771679999999981899628899999999983997077999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99986477654453223445566543243452013322223347999973102341267888887653222356641133
Q gi|254781111|r   84 CYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQ  163 (237)
Q Consensus        84 ~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ  163 (237)
                      +||||||||  ||+|++|||+||+|.+||++.|||+||||++.+|+.+++....       +.+..++++  ...++.||
T Consensus        87 ~asLIHDDI--~D~~~~RRG~pt~~~~~G~~~AIl~GD~L~~~a~~~l~~~~~~-------~~~~~~~~~--~~~~~~Gq  155 (341)
T 3mzv_A           87 TATLLHDDV--VDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNM-------RVMEILANA--SAVIAEGE  155 (341)
T ss_dssp             HHHHHHHHC--------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCH-------HHHHHHHHH--HHHHHHHH
T ss_pred             HHHHHCCCC--CCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHH--HHHHHCCH
T ss_conf             999981876--6678655699975330682499998899999999864213654-------799999998--67760600


Q ss_pred             CCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2221000---0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  164 MLDIQDE---FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       164 ~~dl~~~---~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      .+|+.+.   .+++++|++|+.+|||+||.++|.+|+++++++++..+.+.+||+++|+||||+||++|++||.
T Consensus       156 ~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~l~~~~~~~~~~l~~~G~~lG~AFQI~DD~ld~~~d~  229 (341)
T 3mzv_A          156 VLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKS  229 (341)
T ss_dssp             HHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             79987502679989999999999999999999998410117998999999999999999999888876530786


No 15 
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00  E-value=0  Score=364.04  Aligned_cols=213  Identities=24%  Similarity=0.329  Sum_probs=179.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999976753024571579999987505-86007999999999961788222240246888899999864776
Q gi|254781111|r   14 KRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDL   92 (237)
Q Consensus        14 ~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~-gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI   92 (237)
                      .+|++.+++++.+.. .+....++.+.+|++|.+. ||||+||.|+++++++++.+.+.++.+|++||++|+||||||||
T Consensus         4 ~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~y~~~~~GK~~Rp~l~~~~~~~~~~~~~~~~~~a~aiEllH~asLihDDI   82 (340)
T 2e8v_A            4 NKMEAKIDELINNDP-VWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDI   82 (340)
T ss_dssp             -CHHHHHHHHHTSCC-CCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             689999999985076-6786340899999999982899519999999999883998899999999999999999987777


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH--
Q ss_conf             544532234455665432434520133222233479999731023412678888876532223566411332221000--
Q gi|254781111|r   93 PSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE--  170 (237)
Q Consensus        93 ~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~--  170 (237)
                        ||+|++|||+||+|++||++.|||+||+|++.+|+++++....  ......++..++..  ...++.||.+|+.++  
T Consensus        83 --~D~~~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~ll~~~~~~--~~~~~~i~~~~~~~--~~~~~~GQ~lDl~~~~~  156 (340)
T 2e8v_A           83 --EDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTK--EPLYHNLITIFNEE--LINLHRGQGLDIYWRDF  156 (340)
T ss_dssp             --HTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCC--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHS
T ss_pred             --CCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHH--HHHHHCCCCHHHHHHHC
T ss_conf             --7799986887079987596066763458999999988760772--17899999998650--14442353203343310


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ----0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  171 ----FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       171 ----~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                          .++++.|++|+.+|||+||++||.+|++++|.++ ..+.+.+||.++|++|||+||++|++||.
T Consensus       157 ~~~~~~t~e~Y~~ii~~KTa~Lf~~a~~~ga~lag~~~-~~~~l~~~g~~lGiaFQI~DD~lD~~~d~  223 (340)
T 2e8v_A          157 LPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQ  223 (340)
T ss_dssp             TTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCHHHHHHCCCCH
T ss_conf             25676779999999998879999999999998613303-31689999999999980332565503985


No 16 
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00  E-value=0  Score=356.80  Aligned_cols=202  Identities=25%  Similarity=0.415  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999976753024571579999987505-86007999999999961788222240246888899999864776
Q gi|254781111|r   14 KRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDL   92 (237)
Q Consensus        14 ~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~-gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI   92 (237)
                      +.|++.|++.+.       ...++.+.++++|.+. ||||+||.|+++++++++++++.++++|+++|++|+||||||||
T Consensus        12 ~~v~~~l~~~~~-------~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~AaavEliH~asLIHDDi   84 (295)
T 3ipi_A           12 RYVEAGIKESIT-------LIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDL   84 (295)
T ss_dssp             HHHHHHHHHHHH-------TCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-------HCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999998742-------1487689999999872895518799999999980999899999999999999999997775


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH--
Q ss_conf             544532234455665432434520133222233479999731023412678888876532223566411332221000--
Q gi|254781111|r   93 PSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE--  170 (237)
Q Consensus        93 ~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~--  170 (237)
                        ||+|++|||+||+|.+||++.||++||+|++.+|++++......        ...+...  ...++.||.+|+...  
T Consensus        85 --~D~~~~RRG~pt~~~~~G~~~Ail~Gd~Ll~~a~~~l~~~~~~~--------~~~~~~~--~~~~~~gq~~d~~~~~~  152 (295)
T 3ipi_A           85 --LDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYGEKV--------IQDFGKA--GMDMAEGEVLDLKLEDE  152 (295)
T ss_dssp             --HHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGCHHH--------HHHHHHH--HHHHHHHHHHHHC----
T ss_pred             --CCCCCCCCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHCCCCCHH--------HHHHHHH--HHHHHCCCHHHHHCCCC
T ss_conf             --78985544578547761829999946999999988632025167--------9999999--99996662588741466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  171 FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       171 ~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      ..++++|++|+.+|||+||++||.+|++++|++++..+.+.+||.++|++|||+||++|++|+.
T Consensus       153 ~~~~~~y~~i~~~KT~~lf~~a~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~  216 (295)
T 3ipi_A          153 SFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVV  216 (295)
T ss_dssp             ---CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             7889999999998999999999999999737999999999999999999999999999854898


No 17 
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00  E-value=0  Score=356.90  Aligned_cols=208  Identities=23%  Similarity=0.306  Sum_probs=177.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             48999999999999999999997675302457157999998750586007999999999961788222240246888899
Q gi|254781111|r    4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIH   83 (237)
Q Consensus         4 ~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH   83 (237)
                      ++.+.+.+.+..|++.+++++.       ...++.+.++++|.+.||||+||.|++++++++|++.+.++++|+++|++|
T Consensus        10 ~~~~~~~~~~~~i~~~i~~~l~-------~~~~~~l~~~~~y~~~gGKr~Rp~L~l~~~~~~g~~~~~~~~~A~aiEllH   82 (289)
T 2azj_A           10 SIIEFWLEAKATIDRLIEQFLN-------SNRDWDLVDISSYILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILH   82 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------HCSCTTHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             7999999999999999999863-------379756999999786587648999999999982998889999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99986477654453223445566543243452013322223347999973102341267888887653222356641133
Q gi|254781111|r   84 CYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQ  163 (237)
Q Consensus        84 ~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ  163 (237)
                      +||||||||  ||+|++|||+||+|.+||++.||++||+|++.++++++.....   .    .+..+.+.  ...++.||
T Consensus        83 ~asLihDDi--~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~---~----~~~~~~~~--~~~~~~Gq  151 (289)
T 2azj_A           83 SASLALCDI--VDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGD---D----ALNTSIEL--WKDTSVGA  151 (289)
T ss_dssp             HHHHHHHHH--HTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---H----HHHHHHHH--HHHHHHHH
T ss_pred             HHHHHCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC---H----HHHHHHHH--HHHHHHHH
T ss_conf             999972787--7888778896552657895899999899997657776521442---2----58999988--77776414


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             22210000003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  164 MLDIQDEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       164 ~~dl~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      .+|+.    ++++|++|+++|||+||++||.+|+++++. ++..+.+.+||.++|++|||+||++|+++|.
T Consensus       152 ~~d~~----~~~~y~~~i~~KTg~Lf~~~~~~ga~~~~~-~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~  217 (289)
T 2azj_A          152 LRDMY----DNSDYIRTIELKTGSLFKLSTVLSAYASKH-YNTKQQMLDVGKYLGIIYQVIDDFVDYKTKK  217 (289)
T ss_dssp             HHTTT----TTSCHHHHHHHHTHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             55216----688999999999889999998768986388-1022689999877678999999988733772


No 18 
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00  E-value=0  Score=353.82  Aligned_cols=205  Identities=27%  Similarity=0.420  Sum_probs=172.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             999999997675302457157999998750-5860079999999999617882222402468888999998647765445
Q gi|254781111|r   18 TILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMD   96 (237)
Q Consensus        18 ~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D   96 (237)
                      ..+..+-......+.+. .+.+.++.+|.+ .||||+||.|+++++++++++.+.++++|+++|++|+||||||||  ||
T Consensus        33 ~d~~~v~~~i~~~l~s~-~~~i~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi--~D  109 (345)
T 3oyr_A           33 ADMAGVNRLITDRMQSD-VAIIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDV--VD  109 (345)
T ss_dssp             HHHHHHHHHHHHHTCCS-STHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTT--C-
T ss_pred             HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CC
T ss_conf             99999999999987688-2779999999874898517399999999981998789999999999999999986877--78


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH---HHH
Q ss_conf             32234455665432434520133222233479999731023412678888876532223566411332221000---000
Q gi|254781111|r   97 NGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE---FID  173 (237)
Q Consensus        97 ~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~---~~~  173 (237)
                      +|++|||+||+|.+||+..||++||||++.+|+.+++.....       .+..+++.  ...+++||.++....   .++
T Consensus       110 ~~~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~-------~~~~~~~~--~~~~~~G~~~~~~~~~~~~~~  180 (345)
T 3oyr_A          110 GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMK-------ALEILARA--SRVIAEGEVLQLMRSHDLNLS  180 (345)
T ss_dssp             --------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHH--HHHHHHHHHHHHHTSSCSSCC
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH-------HHHHHHHH--HHHHHCCHHHHHHHHCCCCCC
T ss_conf             875667998857366842888999999999887544111068-------89999999--999973106887762277766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  174 ETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       174 ~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      +++|++|+.+|||+||.++|.+|+++++++++..+.+.+||.++|++|||+||++|++||.
T Consensus       181 ~~~yl~ii~~KTa~L~~~~~~~ga~~~~~~~~~~~~l~~~G~~lG~AFQI~DDllD~~~~~  241 (345)
T 3oyr_A          181 QAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGAT  241 (345)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             8999999999874899999987998837999999999988899999999987654134346


No 19 
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, isoprene biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00  E-value=0  Score=357.14  Aligned_cols=220  Identities=38%  Similarity=0.637  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             48999999999999999999997675302457157999998750586007999999999961788222240246888899
Q gi|254781111|r    4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIH   83 (237)
Q Consensus         4 ~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH   83 (237)
                      ++.++|++..+.|+..+.+.+...       .+..+.++++|+++||||+||.|++++++++|++++.++++|+|||++|
T Consensus         2 ~l~~~l~~~~~~v~~~l~~~~~~~-------~~~~l~~~~~y~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH   74 (297)
T 3m0g_A            2 SLSERLKEVQDAVETAMAAAIGRL-------PAGDLRDAMAYAAQGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALH   74 (297)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTS-------CCSHHHHHHHHHHSCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             879999999999999999986438-------8088999998474575189999999999880969899999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99986477654453223445566543243452013322223347999973102341267888887653222356641133
Q gi|254781111|r   84 CYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQ  163 (237)
Q Consensus        84 ~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ  163 (237)
                      +||||||||+++|+|++|||+||+|.+||++.|||+||++++.+|+++++...... ............+.+..+++.||
T Consensus        75 ~asLIHDDI~d~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~q  153 (297)
T 3m0g_A           75 AYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSA-ENRVALVAALAQASGAEGMVYGQ  153 (297)
T ss_dssp             HHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCH-HHHHHHHHHHHHHHSTTTHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999187646898744489964687708547677511787767999875201208-88999999999999999999773


Q ss_pred             CCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2221000----0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  164 MLDIQDE----FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       164 ~~dl~~~----~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      ..++...    ..+++.|++|+.+|||+||.++|.+|+++++.++.   .+.+||+++|++|||+||++|++||.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~KTa~l~~~~~~~~~~~~~~~~~---~~~~~g~~lG~aFQi~DDlld~~gd~  225 (297)
T 3m0g_A          154 ALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNE  225 (297)
T ss_dssp             HHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             7988866226307899999987999999999999989987499789---99987788888999888988731787


No 20 
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00  E-value=0  Score=351.08  Aligned_cols=225  Identities=36%  Similarity=0.556  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             8999999999999999999997675302457157999998750-586007999999999961788222240246888899
Q gi|254781111|r    5 LPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIH   83 (237)
Q Consensus         5 l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH   83 (237)
                      .+..+.++.++++..+++++.+.    .. .++.+.++++|.+ .||||+||.|+++++++++++++.+.++|++||++|
T Consensus         9 ~~~~~~~~~~~~~~~l~~~~~~~----~~-~~~~l~~~~~y~~~~GGKr~Rp~l~l~~~~~~~~~~~~~~~~A~aiEllH   83 (313)
T 3lom_A            9 NKQVIDKYTQRHELYLEQLLNEI----II-PAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTH   83 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTS----CC-CCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC----CC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             89999999999999999987635----79-84789999998870796419999999999985988889999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99986477654453223445566543243452013322223347999973102-34126788888765322235664113
Q gi|254781111|r   84 CYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKT-QLKDNIRSQLMLSLTHNIGLQGMLGG  162 (237)
Q Consensus        84 ~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~G  162 (237)
                      ++|||||||||||+|++|||+||+|.+||+..||++||++++.+++.+..... ..+..........+..+.+..+++.|
T Consensus        84 ~asLIHDDI~~mD~s~~RRG~pt~h~~~g~~~Ai~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g  163 (313)
T 3lom_A           84 CYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSG  163 (313)
T ss_dssp             HHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99997477403587644567975778865488898755688999887533101225388899999999997300342144


Q ss_pred             CCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3222100---00003679999999863489999999-999759888999999999999849999986765344320
Q gi|254781111|r  163 QMLDIQD---EFIDETQVFMIQKMKTGALMCFACES-GAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       163 Q~~dl~~---~~~~~~~y~~i~~~KTa~lf~~~~~~-ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      |..|+..   ..++.+.|++|+++|||+||.+++.+ |+++++.+++..+.+.+||.++|++|||+||++|++||.
T Consensus       164 ~~~d~~~~~~~~~~~~~y~~i~~~KT~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~  239 (313)
T 3lom_A          164 QSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPT  239 (313)
T ss_dssp             HHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCH
T ss_conf             0467777740468899999999985377988779999998443227899999999999998802321421024898


No 21 
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00  E-value=0  Score=347.51  Aligned_cols=193  Identities=23%  Similarity=0.241  Sum_probs=160.7

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-----------------CCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             799999875058600799999999996178822-----------------224024688889999986477654453223
Q gi|254781111|r   38 RLLSAIRYALLGGKKIRSFLVTECASLFNVNHL-----------------TALRVGAAIECIHCYSLIHDDLPSMDNGYI  100 (237)
Q Consensus        38 ~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~-----------------~~~~~AaavEllH~asLihDDI~~~D~s~~  100 (237)
                      .+.++++|++.||||+||++++++++++.+...                 .+..+|++||++|+||||||||  ||+|++
T Consensus        57 ~~~~~~~y~~~GGKr~Rp~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~la~~iEllH~asLihDDI--mD~s~~  134 (390)
T 3dyh_A           57 YLRKMMDTTCLGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDI--MDNSVT  134 (390)
T ss_dssp             HHHHHHHHHHSSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCE
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCC
T ss_conf             999999654688542023999999999716686643100000012456899999999999999999987103--579988


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH-----------
Q ss_conf             445566543243452013322223347999973102341267888887653222356641133222100-----------
Q gi|254781111|r  101 RRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD-----------  169 (237)
Q Consensus       101 RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~-----------  169 (237)
                      |||+||+|.+||++.||++||+|++.++..+.............+++..+++..  ..++.||.+|+.+           
T Consensus       135 RRG~pt~h~~~g~~~ai~~gD~ll~~a~~~~~~~~~~~~~~~~~~il~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~  212 (390)
T 3dyh_A          135 RRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVD--YTTAVGQLYDVTSMFDSNKLDPDV  212 (390)
T ss_dssp             ETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH--HHHHHHHHHHHTTTSCGGGCCTTS
T ss_pred             CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             799975031367488899822999999999998523667156999999999999--999888886443010241234777


Q ss_pred             --------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------0000367999999986348-9999999999759888-999999999999849999986765344320
Q gi|254781111|r  170 --------EFIDETQVFMIQKMKTGAL-MCFACESGAIMAHASQ-NEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       170 --------~~~~~~~y~~i~~~KTa~l-f~~~~~~ga~lag~~~-~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                              ...|+++|++|+++|||+| |.+|+.+|++++|+.+ ...+.+.+||.++|++|||+|||||++||.
T Consensus       213 ~~~~~~~~~~~t~~~Y~~ii~~KTa~l~~~~~~~~g~~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~  287 (390)
T 3dyh_A          213 SQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPP  287 (390)
T ss_dssp             CCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             630223432179999999999776699999999998977051178899889888999999999999988700896


No 22 
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00  E-value=0  Score=344.17  Aligned_cols=192  Identities=26%  Similarity=0.264  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5799999875058600799999999996178822-------224024688889999986477654453223445566543
Q gi|254781111|r   37 DRLLSAIRYALLGGKKIRSFLVTECASLFNVNHL-------TALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHI  109 (237)
Q Consensus        37 ~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~-------~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~  109 (237)
                      ..+.++++|.+.||||+||+++++++++++++..       .++++|++||++|++|||||||  ||+|++|||+||+|+
T Consensus        57 ~~l~~~l~y~~~GGKrlRp~l~~~~~~~~~~~~~~~~~~~~~a~~~a~aiEliH~asLvhDDI--~D~s~~RRG~pt~h~  134 (367)
T 1uby_A           57 ARLKEVLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDI--MDQSLTRRGQLCWYK  134 (367)
T ss_dssp             HHHHHHHHHHSSSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGG
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCC
T ss_conf             999999846568863266999999999857997666678999999999999999999998264--407887789833101


Q ss_pred             CCCCCCCHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH--------HHHHHHHHH
Q ss_conf             2434520133222233479-9997310234126788888765322235664113322210000--------003679999
Q gi|254781111|r  110 QYDEVTAIIAGNGLLTYAF-EIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF--------IDETQVFMI  180 (237)
Q Consensus       110 ~~G~~~AIl~Gd~l~~~a~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~--------~~~~~y~~i  180 (237)
                      +||++.||+.||+|+..++ .++......  .....+++..++++.  ..++.||.+|+.+..        .+++.|++|
T Consensus       135 ~~g~~~ail~gd~ll~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~t~~~y~~i  210 (367)
T 1uby_A          135 KEGVGLDAINDSFLLESSVYRVLKKYCRQ--RPYYVHLLELFLQTA--YQTELGQMLDLITAPVSKVDLSHFSEERYKAI  210 (367)
T ss_dssp             STTTTTHHHHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHH--HHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHH
T ss_pred             CCHHHHHHHHCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             12043888711348999999999872546--558999999999988--88899999999731244445432789999999


Q ss_pred             HHHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99986348--9999999999759888999999999999849999986765344320
Q gi|254781111|r  181 QKMKTGAL--MCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       181 ~~~KTa~l--f~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      +++|||.|  |..++..++++++.+++..+.+.+||.++|++|||+||++|++||.
T Consensus       211 i~~KTa~ls~~~~~~~~~~~~g~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~  266 (367)
T 1uby_A          211 VKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDP  266 (367)
T ss_dssp             HHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             99988888889999987332222203778777655300057677314676602896


No 23 
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3mys_A*
Probab=100.00  E-value=0  Score=353.50  Aligned_cols=190  Identities=23%  Similarity=0.226  Sum_probs=158.6

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999987505860079999999999617882------2224024688889999986477654453223445566543243
Q gi|254781111|r   39 LLSAIRYALLGGKKIRSFLVTECASLFNVNH------LTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYD  112 (237)
Q Consensus        39 l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~------~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G  112 (237)
                      ....++|+++||||+||+|++++++++++..      +.++++|++||++|++|||||||  ||+|++|||+||+|++||
T Consensus        68 ~~~~~~y~~~GGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~a~aiEllH~asLIHDDI--~D~s~~RRG~pt~h~~~g  145 (395)
T 2ihi_A           68 YKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDI--MDKGEMRRNKYCWYLLKD  145 (395)
T ss_dssp             HHHHHHHHHSSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCSEETTEECGGGSTT
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCHHCCCC
T ss_conf             999986678884006499999999981899888403999999999999999999998574--148898899711411678


Q ss_pred             CCCCHHHHHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH---------------------
Q ss_conf             4520133222233--47999973102341267888887653222356641133222100---------------------
Q gi|254781111|r  113 EVTAIIAGNGLLT--YAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD---------------------  169 (237)
Q Consensus       113 ~~~AIl~Gd~l~~--~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~---------------------  169 (237)
                      ++.||++||+|+.  .++.++......  .....+++..++++.  ..++.||.+|+.+                     
T Consensus       146 ~~~Ail~GD~ll~~~~~~~ll~~~~~~--~~~~~~i~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e  221 (395)
T 2ihi_A          146 VETKNAVNDVLLLYNSIYKLIEIYLRN--ESCYVDVIATFRDAT--LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPE  221 (395)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHH--HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-
T ss_pred             CHHHHHHCHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHH
T ss_conf             158888351999999999999873258--166999999999999--9999999999998860120466665200112100


Q ss_pred             ------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------0000367999999986348-999999999975988--8999999999999849999986765344320
Q gi|254781111|r  170 ------EFIDETQVFMIQKMKTGAL-MCFACESGAIMAHAS--QNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       170 ------~~~~~~~y~~i~~~KTa~l-f~~~~~~ga~lag~~--~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                            ..+++++|++|+.+|||+| |.+|+.+|++++|.+  +...+.+.+||.++|++|||+||++|++||.
T Consensus       222 ~~~~~~~~~t~~~Y~~~i~~KTa~L~~~~~~~~g~~~ag~~~d~~~~~~l~~~g~~lGiaFQI~DD~lD~~gd~  295 (395)
T 2ihi_A          222 QPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDS  295 (395)
T ss_dssp             CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             00122243899999999997548999999999999860463008999999999999999999866877610895


No 24 
>2ftz_A Geranyltranstransferase; TM0161, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima MSB8}
Probab=100.00  E-value=0  Score=350.00  Aligned_cols=207  Identities=30%  Similarity=0.472  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999999976753024571579999987505-86007999999999961788222240246888899999864
Q gi|254781111|r   11 ENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIH   89 (237)
Q Consensus        11 ~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l~-gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLih   89 (237)
                      -..+.|++.+.+++       .+..+..+.++++|.+. ||||+||.|++++++++|++.+.++++|+++|++|+|||||
T Consensus        13 ~~~~~v~~~l~e~~-------~~~~~~~~~~a~~y~~~~GGKrlRp~L~l~~~~~~g~~~~~~~~~AaaiEllH~asLIH   85 (284)
T 2ftz_A           13 MKXEXVEERIREIL-------RPGWDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIH   85 (284)
T ss_dssp             HHHHHHHHHHHHHH-------SCSSCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             05999999999870-------56896579999998881699808799999999980988789999999999999999997


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             77654453223445566543243452013322223347999973102341267888887653222356641133222100
Q gi|254781111|r   90 DDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD  169 (237)
Q Consensus        90 DDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~  169 (237)
                      ||||+||++++|||+||+|.+||++.||++||+|++.+|+++++......       +..+...  ...++.||..|...
T Consensus        86 DDI~d~D~~~~RRg~pt~h~~~g~~~Ail~GD~L~~~a~~~l~~~~~~~~-------~~~~~~~--~~~~~~g~~~~~~~  156 (284)
T 2ftz_A           86 DDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXI-------FEEFSET--AYXLLLGEAMDVEF  156 (284)
T ss_dssp             HHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHH-------HHHHHHH--HHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHH-------HHHHHHH--HHHHHHHHHHHHHH
T ss_conf             78853568756699843042103177999779999998762101245136-------8999999--99999999999998


Q ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC
Q ss_conf             0----0003679999999863489999999999759888999999999999849999986765344320---67
Q gi|254781111|r  170 E----FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL---PK  236 (237)
Q Consensus       170 ~----~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~k  236 (237)
                      .    ..+++.|..|+.+|||+||.+||.+|++++|.++   +.+.+||+++|++|||+||++|++||.   ||
T Consensus       157 ~~~~~~~~~~~~~~~~~~KT~~lf~~~~~~gail~g~~~---~~l~~~g~~lG~aFQI~DDilD~~gd~~~~GK  227 (284)
T 2ftz_A          157 ERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDH---TXMXLLGEXFGVAFQIYDDLXDILGSFEKVGK  227 (284)
T ss_dssp             HHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHCCHHHHCCCCCHHHHCC
T ss_conf             751020118999999998899999889999999808978---79998750668875210633102589898697


No 25 
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural genomics consortium, SGC; HET: RIS; 1.80A {Homo sapiens} PDB: 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* 3n1w_F* 3n3l_F* 2f94_F* ...
Probab=100.00  E-value=0  Score=342.48  Aligned_cols=220  Identities=20%  Similarity=0.206  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC-------CCCCCHH
Q ss_conf             999999999999999997675302-----4571579999987505860079999999999617882-------2224024
Q gi|254781111|r    9 LQENSKRIDTILDDLLLQTASHMQ-----TQHNDRLLSAIRYALLGGKKIRSFLVTECASLFNVNH-------LTALRVG   76 (237)
Q Consensus         9 l~~~~~~id~~l~~~l~~~~~~~~-----~~~~~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~-------~~~~~~A   76 (237)
                      .++.++++.+...++..++.....     ......+.++++|.+.||||+||+++++++++++.+.       +.++++|
T Consensus        31 ~~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~Y~~~GGKr~R~llv~~~~~~l~~~~~~~~e~~~~a~~~a  110 (374)
T 2qis_A           31 YAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVG  110 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC--CGGGHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             99999999999999999987641269870579999999985757883107599999999986486568867899999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             688889999986477654453223445566543243452-0133222233479999731023412678888876532223
Q gi|254781111|r   77 AAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVT-AIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIG  155 (237)
Q Consensus        77 aavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~-AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  155 (237)
                      ++||++|+||||||||  ||+|++|||+||||++||++. |||+||+|++.+++++.......+  ...+++..++++. 
T Consensus       111 ~~iEllH~asLvhDDI--mD~s~~RRG~pt~~~~~G~~~~Ai~~gd~L~~~~~~ll~~~~~~~~--~~~~l~~~~~~~~-  185 (374)
T 2qis_A          111 WCVELLQAFFLVADDI--MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQP--YYLNLIELFLQSS-  185 (374)
T ss_dssp             HHHHHHHHHHHHHHHH--HTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTST--THHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHH-
T ss_conf             9999999999998676--3699888998353457885388995199999999999998423563--7999999999999-


Q ss_pred             HHHHHCCCCCCCCHH--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             566411332221000--------000367999999986348-999999999975988-8999999999999849999986
Q gi|254781111|r  156 LQGMLGGQMLDIQDE--------FIDETQVFMIQKMKTGAL-MCFACESGAIMAHAS-QNEKERLRCFGENLGIIFQLAD  225 (237)
Q Consensus       156 ~~~l~~GQ~~dl~~~--------~~~~~~y~~i~~~KTa~l-f~~~~~~ga~lag~~-~~~~~~l~~~g~~lGiafQi~D  225 (237)
                       ..++.||.+|+.+.        ..+++.|++|+++|||+| |.+|+.+|++++|.+ ++....+.+||.++|++|||+|
T Consensus       186 -~~~~~GQ~lDl~~~~~~~~d~~~~t~~~Y~~ii~~KTa~l~~~~~~~~~~~~ag~~~~~~~~~l~~~g~~lG~aFQI~D  264 (374)
T 2qis_A          186 -YQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQD  264 (374)
T ss_dssp             -HHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             -9998759999883125666643167999999999986688999999988640110188899888789999999895123


Q ss_pred             HHHHHHHHH
Q ss_conf             765344320
Q gi|254781111|r  226 DLLDCEEDL  234 (237)
Q Consensus       226 D~lD~~~D~  234 (237)
                      |+||++||.
T Consensus       265 D~LD~~gd~  273 (374)
T 2qis_A          265 DYLDLFGDP  273 (374)
T ss_dssp             HHHHHHSCH
T ss_pred             HHHHHCCCH
T ss_conf             555401895


No 26 
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl allyl pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00  E-value=0  Score=344.08  Aligned_cols=195  Identities=23%  Similarity=0.239  Sum_probs=157.5

Q ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-----------CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             15799999875058600799999999996178822-----------2240246888899999864776544532234455
Q gi|254781111|r   36 NDRLLSAIRYALLGGKKIRSFLVTECASLFNVNHL-----------TALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGK  104 (237)
Q Consensus        36 ~~~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~~~~-----------~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~  104 (237)
                      ...+.+.++|.+.||||+||.|++++++++++...           .+..+|++||++|+||||||||  ||+|++|||+
T Consensus        33 ~~~~~~~~~y~~~GGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~iEllH~asLihDDI--~D~s~~RRG~  110 (362)
T 1yhl_A           33 ARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDI--MDGSVMRRGK  110 (362)
T ss_dssp             HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTE
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCC
T ss_conf             99999999645788531027999999999636434554325677899999999999999999997322--6799888999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH---------------
Q ss_conf             66543243452013322223347999973102341267888887653222356641133222100---------------
Q gi|254781111|r  105 PTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD---------------  169 (237)
Q Consensus       105 pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~---------------  169 (237)
                      ||+|++||++.||++||+|++.++..+.............+++..+++..  ...+.||.+|+.+               
T Consensus       111 pt~h~~~G~~~ai~~gD~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~d~e~~~~~  188 (362)
T 1yhl_A          111 PCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVD--YATAVGQMYDVTSMCDSNKLDPEVAQPM  188 (362)
T ss_dssp             ECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH--HHHHHHHHHHHTTTBCGGGCCTTSCCCB
T ss_pred             CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHCCCCHHHHHHHHC
T ss_conf             87423068189999663999999999998752468455899999999999--9999998704124404631118988630


Q ss_pred             ----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ----0000367999999986348-99999999997598889-99999999999849999986765344320
Q gi|254781111|r  170 ----EFIDETQVFMIQKMKTGAL-MCFACESGAIMAHASQN-EKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       170 ----~~~~~~~y~~i~~~KTa~l-f~~~~~~ga~lag~~~~-~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                          ..+++++|++|+.+|||+| |.+|+.+|++++|.+++ ..+.+.+||.++|++|||+||++|++||.
T Consensus       189 ~~~~~~~t~~~Y~~~i~~KTa~L~~~~~~~~g~~~~g~~~~~~~~~l~~~g~~lGiaFQI~DDilD~~~d~  259 (362)
T 1yhl_A          189 TTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPP  259 (362)
T ss_dssp             CSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             25620058999999999987467899999877877136318899888767879999999999988700797


No 27 
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00  E-value=0  Score=355.87  Aligned_cols=192  Identities=23%  Similarity=0.259  Sum_probs=168.3

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             799999875058600799999999996178----8222240246888899999864776544532234455665432434
Q gi|254781111|r   38 RLLSAIRYALLGGKKIRSFLVTECASLFNV----NHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDE  113 (237)
Q Consensus        38 ~l~~~~~y~l~gGKr~R~~l~l~~~~~~~~----~~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~  113 (237)
                      .+.++++|.+.||||+||++++++++++++    +.+.++++|++||++|+||||||||  ||+|++|||+||+|++||+
T Consensus        59 ~~~~~l~Y~~~GGKr~Rp~l~~~~~~~~~~~~~~~~e~~~~la~~iEllH~asLIhDDI--~D~s~~RRG~pt~h~~~G~  136 (368)
T 2her_A           59 YYLNCIDYNVKKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDI--MDSGKFRRGAPCWYIVHGQ  136 (368)
T ss_dssp             HHHHHHHHHTTSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCEETTEECHHHHTHH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCHHHCCCC
T ss_conf             99999736789840052899999999838876688899999999999999999998532--6799988997046544540


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf             520133222233479999731023412678888876532223566411332221000-----000367999999986348
Q gi|254781111|r  114 VTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE-----FIDETQVFMIQKMKTGAL  188 (237)
Q Consensus       114 ~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~-----~~~~~~y~~i~~~KTa~l  188 (237)
                      +.|||+||+|++++++++.+...........+++..++++.  ..++.||.+|+.+.     .++++.|++|+++|||+|
T Consensus       137 ~~AI~~gd~L~~~a~~~l~~l~~~~~~~~~~~i~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~t~e~Yl~ii~~KTa~l  214 (368)
T 2her_A          137 SNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRY  214 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             56875799999999999987423567499999999988887--7876308998874511568856999999999986416


Q ss_pred             -HHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -9999999999759--88899999999999984999998676534432
Q gi|254781111|r  189 -MCFACESGAIMAH--ASQNEKERLRCFGENLGIIFQLADDLLDCEED  233 (237)
Q Consensus       189 -f~~~~~~ga~lag--~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D  233 (237)
                       |.+|+.+|++++|  .+++..+.+.+||.++|++|||+||++|++++
T Consensus       215 ~f~~~~~~g~~lag~~~~~~~~~~l~~~g~~lGiaFQI~DD~lD~~~g  262 (368)
T 2her_A          215 TFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLFN  262 (368)
T ss_dssp             HTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             888999999997154202378999999999999999917987524069


No 28 
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum}
Probab=100.00  E-value=0  Score=340.45  Aligned_cols=223  Identities=26%  Similarity=0.343  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHH-HHHCCCCCHHHHHHHHHHHHHCCC------CCCCCCCHHHH
Q ss_conf             999999999999999999767530245715--799999-875058600799999999996178------82222402468
Q gi|254781111|r    8 KLQENSKRIDTILDDLLLQTASHMQTQHND--RLLSAI-RYALLGGKKIRSFLVTECASLFNV------NHLTALRVGAA   78 (237)
Q Consensus         8 ~l~~~~~~id~~l~~~l~~~~~~~~~~~~~--~l~~~~-~y~l~gGKr~R~~l~l~~~~~~~~------~~~~~~~~Aaa   78 (237)
                      ++.++.+.|++.+++++...........++  .+.+.+ +|.++||||+||.||+++++++++      +.+.++++|++
T Consensus        17 ~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~A~a   96 (380)
T 3lk5_A           17 DLDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAAS   96 (380)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999999999998876411361299999999986017845061999999999828876665237999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC----------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             88899999864776544532234455665432----------------43452013322223347999973102341267
Q gi|254781111|r   79 IECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQ----------------YDEVTAIIAGNGLLTYAFEIISSPKTQLKDNI  142 (237)
Q Consensus        79 vEllH~asLihDDI~~~D~s~~RRG~pt~h~~----------------~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~  142 (237)
                      +|++|+||||||||  ||+|++|||+||+|.+                ||+..||++||+|++.+++++++...  ....
T Consensus        97 iEllH~asLIHDDI--~D~s~~RRG~pt~h~~~~~~~~~~~~~~~~~~~g~~~ail~GD~l~~~a~~ll~~~~~--~~~~  172 (380)
T 3lk5_A           97 LEFIQACALIHDDI--IDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGL--SAEA  172 (380)
T ss_dssp             HHHHHHHHHHHHHH--HTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCC--CHHH
T ss_pred             HHHHHHHHHHCCCC--CCCCCCCCCCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHH
T ss_conf             99999999972770--1599876898637652206799861453077770889999988999999998653167--7899


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             88888765322235664113322210000---0036799999998634-8999999999975988899999999999984
Q gi|254781111|r  143 RSQLMLSLTHNIGLQGMLGGQMLDIQDEF---IDETQVFMIQKMKTGA-LMCFACESGAIMAHASQNEKERLRCFGENLG  218 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~---~~~~~y~~i~~~KTa~-lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG  218 (237)
                      ..+++..++..  ...++.||.+|+.+..   .+.+.|..++.+||++ +|.+||.+|++++|++++..+.+.+||.++|
T Consensus       173 ~~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~~~~~~~~~~~~~kta~~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG  250 (380)
T 3lk5_A          173 LARTRDAWRGM--RTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIG  250 (380)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999888--8888500568887512431038999999998874699999999887653499999999999999999


Q ss_pred             HHHHHHHHHHHHHHH---HCC
Q ss_conf             999998676534432---067
Q gi|254781111|r  219 IIFQLADDLLDCEED---LPK  236 (237)
Q Consensus       219 iafQi~DD~lD~~~D---~~k  236 (237)
                      +||||+||++|++||   .||
T Consensus       251 iaFQI~DD~lD~~g~~~~~GK  271 (380)
T 3lk5_A          251 IAFQLRDDLLGVFGDPAITGK  271 (380)
T ss_dssp             HHHHHHHHHHHHHSCHHHHSS
T ss_pred             HHHHHHHHHHHHCCCHHHCCC
T ss_conf             999998888763089854699


No 29 
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00  E-value=0  Score=339.70  Aligned_cols=215  Identities=26%  Similarity=0.381  Sum_probs=183.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf             348999999999999999999997675302457157999998750-5860079999999999617882222402468888
Q gi|254781111|r    3 GGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIEC   81 (237)
Q Consensus         3 ~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEl   81 (237)
                      -++++.+++...+|++.+.+.+.        ..++.+.++++|.+ .||||+||+|++++++++|++.+.++++|+++|+
T Consensus         4 ~~~~~~l~~~~~~v~~~l~~~~~--------~~~~~~~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEl   75 (325)
T 3aqb_B            4 LSYKAFLNPYIIEVEKRLYECIQ--------SDSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLEL   75 (325)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHC--------CSSHHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             46999999999999999998755--------7857899999999838985186999999998829987899999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999864776544532234455665432434520133222233479999731023412678888876532223566411
Q gi|254781111|r   82 IHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLG  161 (237)
Q Consensus        82 lH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (237)
                      +|+||||||||  +|+|+.|||+||+|.+||+..|||+||++++.+++.+........    ....   ...  ...++.
T Consensus        76 lH~asLIhDDI--~D~~~~RRg~pt~h~~~G~~~ail~Gd~l~~~a~~~~~~~~~~~~----~~~~---~~~--~~~~~~  144 (325)
T 3aqb_B           76 VHMASLVHDDY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKF----HQIF---SKT--ILEVCF  144 (325)
T ss_dssp             HHHHHHHHHHH--HHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHH----HHHH---HHH--HHHHHH
T ss_pred             HHHHHHHHCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH----HHHH---HHH--HHHHHH
T ss_conf             99999985888--889988789987665314689998346788877775321334689----9999---998--765411


Q ss_pred             CCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C
Q ss_conf             33222100---00003679999999863489999999999759888999999999999849999986765344320---6
Q gi|254781111|r  162 GQMLDIQD---EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL---P  235 (237)
Q Consensus       162 GQ~~dl~~---~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~---~  235 (237)
                      ||..++..   ..++++.|++|++.|||+||+++|.+|+++++++++..+.+.+||.++|++|||+||++|++||.   |
T Consensus       145 g~~~~~~~~~~~~~~~~~y~~ii~~KT~~l~~~~~~~~ail~~~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~G  224 (325)
T 3aqb_B          145 GEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLG  224 (325)
T ss_dssp             HHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHCC
T ss_conf             41899888607888999999999999999999999999997699756563599999999999983441320358865519


Q ss_pred             C
Q ss_conf             7
Q gi|254781111|r  236 K  236 (237)
Q Consensus       236 k  236 (237)
                      |
T Consensus       225 K  225 (325)
T 3aqb_B          225 K  225 (325)
T ss_dssp             S
T ss_pred             C
T ss_conf             8


No 30 
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori}
Probab=100.00  E-value=0  Score=336.83  Aligned_cols=229  Identities=32%  Similarity=0.493  Sum_probs=179.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCC------CCCCCC
Q ss_conf             98348999999999999999999997675302457157999998750-58600799999999996178------822224
Q gi|254781111|r    1 MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNV------NHLTAL   73 (237)
Q Consensus         1 m~~~l~~~l~~~~~~id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~------~~~~~~   73 (237)
                      |+.+.|. +. +.++..+.+++++.+......... +.+.+++.|.+ +||||+||.||++++.++++      +.+.++
T Consensus         1 ~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~-p~l~~~~~~~~~~GGKr~Rp~l~l~~~~al~g~~~~~~~~~~~~   77 (311)
T 3llw_A            1 MSLSSPN-LS-FYYNECERFESFLKNHHLHLESFH-PYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYF   77 (311)
T ss_dssp             -CCCCHH-HH-HHHHHHHHHHHHHHTCCCCCCSSC-SSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHH
T ss_pred             CCCCCCC-HH-HHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             9989854-68-999999999999997366405778-17999999998589851349999999998648764576579999


Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             02468888999998647765445322344556654324345201332222334799997310234126788888765322
Q gi|254781111|r   74 RVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHN  153 (237)
Q Consensus        74 ~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (237)
                      ++|++||++|+|||||||||+||+|++|||+||+|++||+..||++||++++.+++++........  ............
T Consensus        78 ~lA~aiELlH~asLIhDDI~~mD~s~~RRG~pt~h~~~g~~~ai~~gd~l~~~~~~l~~~~~~~~~--~~~~~~~~~~~~  155 (311)
T 3llw_A           78 KIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESH--IIVELIKILSAN  155 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHH
T ss_conf             999999999999999808602466545799876545432289998652888889999873132047--899999999999


Q ss_pred             HHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23566411332221000--00036799999998634899999999997598-8899999999999984999998676534
Q gi|254781111|r  154 IGLQGMLGGQMLDIQDE--FIDETQVFMIQKMKTGALMCFACESGAIMAHA-SQNEKERLRCFGENLGIIFQLADDLLDC  230 (237)
Q Consensus       154 ~~~~~l~~GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~-~~~~~~~l~~~g~~lGiafQi~DD~lD~  230 (237)
                      .+..+++.||..+....  ..+++.|..|+..||+++|.+++.+|+++++. +++..+.+++||.++|++|||+||++|+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lGiaFQi~DD~lD~  235 (311)
T 3llw_A          156 GGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDV  235 (311)
T ss_dssp             HSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999988999887412578999999999985889998999999998863543789999999999989989737988853


Q ss_pred             HHHH
Q ss_conf             4320
Q gi|254781111|r  231 EEDL  234 (237)
Q Consensus       231 ~~D~  234 (237)
                      +||.
T Consensus       236 ~gd~  239 (311)
T 3llw_A          236 TQDE  239 (311)
T ss_dssp             HC--
T ss_pred             CCCH
T ss_conf             4888


No 31 
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00  E-value=0  Score=340.40  Aligned_cols=183  Identities=27%  Similarity=0.352  Sum_probs=156.2

Q ss_pred             HHHHHHC-CCCCHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             9998750-586007999999999961788-22224024688889999986477654453223445566543243452013
Q gi|254781111|r   41 SAIRYAL-LGGKKIRSFLVTECASLFNVN-HLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAII  118 (237)
Q Consensus        41 ~~~~y~l-~gGKr~R~~l~l~~~~~~~~~-~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~AIl  118 (237)
                      +++.|.+ .||||+||.|++++++++|++ ++.++++|+|||++|+||||||||  ||+|++|||+||+|++||++.||+
T Consensus        30 ~~~~~~~~~~GKr~R~~l~l~~~~~~g~~~~~~~~~~AaaiEllH~asLihDDI--~D~s~~RRG~pt~~~~~g~~~ail  107 (299)
T 1v4e_A           30 EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDV--IDGARFRRGKETINFMYGDKAAVA  107 (299)
T ss_dssp             HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEECHHHHHCHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHHCCHHHHH
T ss_conf             999867646886299999999999839996377999999999999999986784--359999888002466622258998


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3222233479999731023412678888876532223566411332221000--00036799999998634899999999
Q gi|254781111|r  119 AGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE--FIDETQVFMIQKMKTGALMCFACESG  196 (237)
Q Consensus       119 ~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~--~~~~~~y~~i~~~KTa~lf~~~~~~g  196 (237)
                      +||+|++.++++++.......       ...+.+.  ...++.||.+|+...  ..++++|++|+.+|||+||.+||.+|
T Consensus       108 ~gd~l~~~a~~~l~~~~~~~~-------~~~~~~~--~~~~~~Gq~~d~~~~~~~~t~~~y~~ii~~KTa~lf~~~~~~g  178 (299)
T 1v4e_A          108 AGDLVLVSAFHTVEEIGNNKL-------RRAFLNV--IGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP  178 (299)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHH-------HHHHHHH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCHHHH-------HHHHHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             244377776552000101788-------8888876--4300357878887227999999999998862101263104677


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCC
Q ss_conf             9975988899999999999984999998676534432--0679
Q gi|254781111|r  197 AIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED--LPKK  237 (237)
Q Consensus       197 a~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D--~~k~  237 (237)
                      ++++|.+++   .+.+||.++|++|||+||++|++||  .||+
T Consensus       179 ai~ag~~~~---~l~~~g~~lG~afQi~DD~lD~~g~~~~GK~  218 (299)
T 1v4e_A          179 ALLEGELGE---DLYNLGVTIGTIYQMFDDIMDFAGMEKIGKD  218 (299)
T ss_dssp             HHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHTTCCSCCTT
T ss_pred             HHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             775476166---8999999999999976998973528864995


No 32 
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00  E-value=0  Score=342.54  Aligned_cols=185  Identities=25%  Similarity=0.298  Sum_probs=163.4

Q ss_pred             CCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7157999998750-586007999999999961788222240246888899999864776544532234455665432434
Q gi|254781111|r   35 HNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDE  113 (237)
Q Consensus        35 ~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~  113 (237)
                      .++.+.+|++|.+ .||||+||.|+++++++++.+++.+.++|+++|++|+||||||||  ||+|++|||+||+|.+||+
T Consensus         9 ~~~~l~e~~~y~~~~gGKr~Rp~L~~~~~~~~~~~~~~~~~~a~aiEllH~asLIHDDI--~D~s~~RRG~pt~h~~~G~   86 (301)
T 2q80_A            9 VQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDNSKLRRGFPVAHSIYGI   86 (301)
T ss_dssp             HHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEECHHHHHCH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCHHHCCH
T ss_conf             02799999999985899629999999999881998899999999999999999982764--6799888999971200573


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf             520133222233479999731023412678888876532223566411332221000----0003679999999863489
Q gi|254781111|r  114 VTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE----FIDETQVFMIQKMKTGALM  189 (237)
Q Consensus       114 ~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~----~~~~~~y~~i~~~KTa~lf  189 (237)
                      +.|||+||+|++.+++.++....+.       .+..++++  ...++.||.+|+.+.    .+++++|+.|+.+|||+||
T Consensus        87 ~~Ail~Gd~l~~~a~~~~~~~~~~~-------~~~~~~~~--~~~~~~Gq~ld~~~~~~~~~~s~~~y~~~i~~KTa~Lf  157 (301)
T 2q80_A           87 PSVINSANYVYFLGLEKVLTLDHPD-------AVKLFTRQ--LLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLF  157 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCTT-------HHHHHHHH--HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHH-------HHHHHHHH--HHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             8899998899988887641012489-------99999999--99987050458776402566769999999987269999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999759888999999999999849999986765344320
Q gi|254781111|r  190 CFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       190 ~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      .+||.+|++++|.+++    +.+||+++|++|||+||++|++||.
T Consensus       158 ~~~~~~ga~~~~~~e~----l~~~g~~lG~afQi~DD~lD~~~~~  198 (301)
T 2q80_A          158 GLAVGLMQLFSDYKED----LKPLLNTLGLFFQIRDDYANLHSKE  198 (301)
T ss_dssp             HHHHHHHHHTCCCCSC----CHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9998887764235689----9999999999998658878601885


No 33 
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genomics; 1.55A {Thermus thermophilus HB8}
Probab=100.00  E-value=0  Score=332.61  Aligned_cols=190  Identities=22%  Similarity=0.273  Sum_probs=161.4

Q ss_pred             HHHHHHHHHH-CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5799999875-058600799999999996178822224024688889999986477654453223445566543243452
Q gi|254781111|r   37 DRLLSAIRYA-LLGGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVT  115 (237)
Q Consensus        37 ~~l~~~~~y~-l~gGKr~R~~l~l~~~~~~~~~~~~~~~~AaavEllH~asLihDDI~~~D~s~~RRG~pt~h~~~G~~~  115 (237)
                      +.+.++++|. .+||||+||.|++++++++|++.+.++++|+++|++|+||||||||  ||+|++|||+||+|.+||++.
T Consensus        25 ~~~~~~~~~~~~~gGK~~R~~l~~~~~~~~~~~~~~~~~~A~a~EliH~asLihDDi--~D~s~~RRG~pt~h~~~G~~~  102 (330)
T 1wmw_A           25 PLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDI--EDGSEERRGRPALHRLHPMPL  102 (330)
T ss_dssp             HHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECHHHHSCHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHCCCCC
T ss_conf             689999999885696409999999999981998789999999999999999987576--779999898804988717632


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf             01332222334799997310234126788888765322235664113322210000-----0036799999998634899
Q gi|254781111|r  116 AIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF-----IDETQVFMIQKMKTGALMC  190 (237)
Q Consensus       116 AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~-----~~~~~y~~i~~~KTa~lf~  190 (237)
                      |||+||||++++|+++++.........  ..+..+++.  ...++.||.+|+.+..     .++++|++++.+|||+||.
T Consensus       103 Ail~Gd~L~a~a~~~l~~~~~~~~~~~--~~~~~~~~~--~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~Kta~l~~  178 (330)
T 1wmw_A          103 ALNAGDAMHAEMWGLLAEGLARGLFPP--EVLLEFHEV--VRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTA  178 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCH--HHHHHHHHH--HHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHH
T ss_pred             EECCCCHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             010541888899999998652365539--999999886--4223776342201012232232699999998872788899


Q ss_pred             H-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9-9999999759888999999999999849999986765344320
Q gi|254781111|r  191 F-ACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       191 ~-~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      + |+.+|++++|.++.  +.+.+||.++|++|||+||++|++||.
T Consensus       179 ~~~~~~ga~~ag~~~~--~~l~~~g~~lG~afQi~DDlld~~~~~  221 (330)
T 1wmw_A          179 VAPLRLGALLAGKTPP--AAYEEGGLRLGTAFQIVDDVLNLEGGE  221 (330)
T ss_dssp             HHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8799988766011257--899999998778999757878753006


No 34 
>3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis}
Probab=100.00  E-value=0  Score=328.59  Aligned_cols=208  Identities=27%  Similarity=0.355  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999997675302457157999998750-5860079999999999617882-222402468888999998647765
Q gi|254781111|r   16 IDTILDDLLLQTASHMQTQHNDRLLSAIRYAL-LGGKKIRSFLVTECASLFNVNH-LTALRVGAAIECIHCYSLIHDDLP   93 (237)
Q Consensus        16 id~~l~~~l~~~~~~~~~~~~~~l~~~~~y~l-~gGKr~R~~l~l~~~~~~~~~~-~~~~~~AaavEllH~asLihDDI~   93 (237)
                      |+..+..+.......+.. .++.+.++++|.+ .||||+||.+++++++++++.. +.+.++|+++|++|+|||||||| 
T Consensus        14 i~~~l~~v~~~l~~~~~~-~~~~l~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~A~aiEllH~asLIhDDI-   91 (335)
T 3n3d_A           14 VEPQLTALQDYLLRTVQL-DNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDV-   91 (335)
T ss_dssp             THHHHHHHHHHHHHHCCC-SCHHHHHHHHHHHHTCTTCHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf             999999999999987078-866899999999958985589999999998769997788999999999999999984675-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH---H
Q ss_conf             4453223445566543243452013322223347999973102341267888887653222356641133222100---0
Q gi|254781111|r   94 SMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQD---E  170 (237)
Q Consensus        94 ~~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~---~  170 (237)
                       ||+|++|||+||+|.+||++.|||+||+|++.+|+.+......  .....    .++.+.  ..++.||..++..   .
T Consensus        92 -~D~s~~RRg~p~~~~~~g~~~Ail~gd~l~~~a~~~~~~~~~~--~~~~~----~~~~~~--~~~~~g~~~~~~~~~~~  162 (335)
T 3n3d_A           92 -IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTD--RSLIQ----NHIDAM--HRILQGELHQMDLNYRE  162 (335)
T ss_dssp             -HTTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHH----HHHHHH--HHHHHHHHHHHHTTTCT
T ss_pred             -CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHH----HHHHHH--HHHHHHHHHHHHHCCCC
T ss_conf             -4799877885332000008899997539999999840000001--79999----999988--99987789998750277


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  171 FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       171 ~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      .+++++|+.++.+|||+||.++|.+|+++++++++....+.+||.++|++|||+||++|++||.
T Consensus       163 ~~~~~~y~~~i~~KT~~l~~~~~~~ga~~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~  226 (335)
T 3n3d_A          163 DITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDP  226 (335)
T ss_dssp             TCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             8899999999998688899999998774102425777999998777788988756765324887


No 35 
>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} SCOP: a.128.1.2
Probab=93.17  E-value=0.37  Score=24.82  Aligned_cols=75  Identities=12%  Similarity=-0.041  Sum_probs=51.1

Q ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4113322210000003679999999863489999999999759888999999999999849999986765344320
Q gi|254781111|r  159 MLGGQMLDIQDEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDL  234 (237)
Q Consensus       159 l~~GQ~~dl~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~  234 (237)
                      +..|+..+......|++++.+-+.+--|....+.+.+-.. .+.+.........++..+|+++|+.+=+-|+-.|.
T Consensus       120 m~~~m~d~~~~~~~t~~dL~~Ycy~VAg~VG~~l~~l~~~-~~~~~~~~~~~~~~a~~lG~alQltNilRD~~eD~  194 (340)
T 1ezf_A          120 MGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSA-SEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQ  194 (340)
T ss_dssp             HHHHHHHHHTSCCCSHHHHHHHHHHHTHHHHHHHHHHHHH-HTSSCHHHHHCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHCCHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7253898736767988999999987551699999999567-77653006889999999999999998998339999


No 36 
>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*
Probab=93.14  E-value=0.28  Score=25.52  Aligned_cols=72  Identities=18%  Similarity=0.183  Sum_probs=48.7

Q ss_pred             HHHCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             6411332221000-00036799999998634899999999997598889999999999998499999867653443206
Q gi|254781111|r  158 GMLGGQMLDIQDE-FIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEEDLP  235 (237)
Q Consensus       158 ~l~~GQ~~dl~~~-~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~D~~  235 (237)
                      .++.|+..|+... ..|++++..-+.+-.|+...+.+.   ++++.+++   ....++..+|+++|+.+=+-|+-.|..
T Consensus       112 ~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~l~~~---il~~~~~~---~~~~~A~~lG~AlQltNiLRDi~eD~~  184 (293)
T 2zco_A          112 NLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTP---ILSDHETH---QTYDVARRLGESLQLINILRDVGEDFE  184 (293)
T ss_dssp             HHHHHHHHGGGCCCCSSHHHHHHHHHHHTHHHHHHHHH---HHCSSCCH---HHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHH---HHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998624356899999999987130219999999---96152200---279999999999999999971598997


No 37 
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=70.32  E-value=4.7  Score=18.30  Aligned_cols=74  Identities=4%  Similarity=-0.043  Sum_probs=48.0

Q ss_pred             HCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1133222100----000036799999998634899999999997598889--9999999999984999998676534432
Q gi|254781111|r  160 LGGQMLDIQD----EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQN--EKERLRCFGENLGIIFQLADDLLDCEED  233 (237)
Q Consensus       160 ~~GQ~~dl~~----~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~--~~~~l~~~g~~lGiafQi~DD~lD~~~D  233 (237)
                      +.|+..+..+    ..++.++|+.+-+.-+|..+.+.+.--+.-...+++  ....+.++-...+...-+.|||.-+.-+
T Consensus       190 ~~a~~~Ea~~r~~g~vPsl~eYl~~R~~t~g~~~~~~l~e~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDi~S~~KE  269 (382)
T 3kb9_A          190 IEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKE  269 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999998769999999999998886557899999999848988999881831789999999999999998898876


No 38 
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=47.63  E-value=4.4  Score=18.47  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4532234455665432434520
Q gi|254781111|r   95 MDNGYIRRGKPTVHIQYDEVTA  116 (237)
Q Consensus        95 ~D~s~~RRG~pt~h~~~G~~~A  116 (237)
                      +-.+|+|||..|.|-+-|+.+|
T Consensus        44 IrRsPlRRGa~TlW~v~~E~~~   65 (81)
T 2htj_A           44 VQRSPLRRGMATYWFLKGEKQA   65 (81)
T ss_dssp             EEEECCSSSSSCEEEESSCSSS
T ss_pred             EECCCCCCCHHHHHHHHHHHHC
T ss_conf             1048500006999999734541


No 39 
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=45.57  E-value=13  Score=15.72  Aligned_cols=74  Identities=9%  Similarity=0.076  Sum_probs=47.6

Q ss_pred             HCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1133222100-----000036799999998634899999999997598889--999999999998499999867653443
Q gi|254781111|r  160 LGGQMLDIQD-----EFIDETQVFMIQKMKTGALMCFACESGAIMAHASQN--EKERLRCFGENLGIIFQLADDLLDCEE  232 (237)
Q Consensus       160 ~~GQ~~dl~~-----~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~--~~~~l~~~g~~lGiafQi~DD~lD~~~  232 (237)
                      +.++..+..+     ..+|.++|+.+-..-+|..+...+..-+.--..+++  ....+.++-+..+...-+.+|+..+.-
T Consensus       147 ~~~~~~e~~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~K  226 (337)
T 1ps1_A          147 FDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASLEK  226 (337)
T ss_dssp             HHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999975048889999999999997123689999999986998899998481259999999999989888888888


Q ss_pred             H
Q ss_conf             2
Q gi|254781111|r  233 D  233 (237)
Q Consensus       233 D  233 (237)
                      +
T Consensus       227 E  227 (337)
T 1ps1_A          227 E  227 (337)
T ss_dssp             H
T ss_pred             H
T ss_conf             8


No 40 
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=32.31  E-value=21  Score=14.47  Aligned_cols=63  Identities=14%  Similarity=0.103  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             000003679999999863489999999999759888999999999999849999986765344
Q gi|254781111|r  169 DEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCE  231 (237)
Q Consensus       169 ~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~lD~~  231 (237)
                      ...++.++|+.+-+.-+|..+.+++.--+.--..+++....++++-+..+..-=+.+|+.-+.
T Consensus       163 ~~~psl~eY~~~R~~~~g~~~~~~l~e~~~~~~l~~~~~~~~~~l~~~~~~~~~l~NDl~S~~  225 (320)
T 3bny_A          163 ARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYE  225 (320)
T ss_dssp             CCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             789899999999987255889999999975799988999999999999999999984898999


No 41 
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A
Probab=28.79  E-value=24  Score=14.11  Aligned_cols=55  Identities=7%  Similarity=0.067  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             0367999999986348999999999975988899999999-99998499999867653
Q gi|254781111|r  173 DETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRC-FGENLGIIFQLADDLLD  229 (237)
Q Consensus       173 ~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~-~g~~lGiafQi~DD~lD  229 (237)
                      +...+.++++.|--+ -+.-..+.|+.-|+.+.+.+.+-. .|.+ --+-|+.+|.++
T Consensus        18 tLnaWVKvvEEk~fs-pEvipmFsALSegatP~Dln~mLn~vGgh-qaamQ~lkd~In   73 (144)
T 2wlv_A           18 TLNAWVKLVEEKKFG-AEVVPGFQALSEGCTPYDINQMLNCVGDH-QAAMQIIREIIN   73 (144)
T ss_dssp             HHHHHHHHHHHHTSC-TTHHHHHHHHTTTCCHHHHHHHHHTTTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCC-HHHHHHHHHHCCCCCHHHHHHHHCCCCCH-HHHHHHHHHHHH
T ss_conf             899999999962788-46767789844999879999986005771-999999999871


No 42 
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} PDB: 2xba_A* 2xb7_A*
Probab=23.56  E-value=13  Score=15.65  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=18.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             2402468888999998647765
Q gi|254781111|r   72 ALRVGAAIECIHCYSLIHDDLP   93 (237)
Q Consensus        72 ~~~~AaavEllH~asLihDDI~   93 (237)
                      +..+|.+++.+|....||-||.
T Consensus       187 ~~qia~gL~yLH~~~IvHrDLK  208 (367)
T 3l9p_A          187 ARDIACGCQYLEENHFIHRDIA  208 (367)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCC
T ss_pred             HHHHHHHHHHHHHCCCEECCCC
T ss_conf             9999999999997891526566


No 43 
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=22.76  E-value=14  Score=15.48  Aligned_cols=23  Identities=17%  Similarity=0.405  Sum_probs=19.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             22402468888999998647765
Q gi|254781111|r   71 TALRVGAAIECIHCYSLIHDDLP   93 (237)
Q Consensus        71 ~~~~~AaavEllH~asLihDDI~   93 (237)
                      -+..+|.+++.+|.--+||-||.
T Consensus       368 ~~~qia~gl~yLH~~~iiHrDLk  390 (535)
T 2h8h_A          368 MAAQIASGMAYVERMNYVHRDLR  390 (535)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99999999999985898467486


No 44 
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphoprotein, RNA-binding, ATP-binding; 3.50A {Mus musculus}
Probab=21.53  E-value=33  Score=13.29  Aligned_cols=56  Identities=14%  Similarity=0.151  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHH---------HHH-HCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             999999999999999976---------753-02457157999998750586007999999999961
Q gi|254781111|r   10 QENSKRIDTILDDLLLQT---------ASH-MQTQHNDRLLSAIRYALLGGKKIRSFLVTECASLF   65 (237)
Q Consensus        10 ~~~~~~id~~l~~~l~~~---------~~~-~~~~~~~~l~~~~~y~l~gGKr~R~~l~l~~~~~~   65 (237)
                      .++.++++.++++|+..-         ... .+..++..+...+..++-.+-+-|-+...+...+.
T Consensus        51 ee~kkk~~~ii~EYf~~~D~~Ea~~~l~EL~~~~~~~~~V~~~I~~Aldrk~~eRE~~s~LLs~L~  116 (358)
T 3eiq_C           51 TAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC  116 (358)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             999999999999997179999999999984882115999999999987488889999999999998


No 45 
>2pwo_A GAG-POL polyprotein (PR160GAG-POL); viral capsid, HIV-1, anti-viral, viral protein; 1.45A {Human immunodeficiency virus 1} PDB: 2pwm_A 2gon_A 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 2x2d_D* 1ak4_C 2jpr_A* 1m9e_C 1m9y_C 1m9f_C 1m9x_C 1m9d_C 1fgl_B
Probab=20.96  E-value=34  Score=13.22  Aligned_cols=55  Identities=9%  Similarity=0.043  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             036799999998634899999999997598889999999-999998499999867653
Q gi|254781111|r  173 DETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLR-CFGENLGIIFQLADDLLD  229 (237)
Q Consensus       173 ~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~l~-~~g~~lGiafQi~DD~lD  229 (237)
                      +...+.++++.|--+ -+.-..+.|+.-|+.+.+++.+- ..|.+-| +.|+.+|.++
T Consensus        19 tLnaWVKvveEk~f~-pEvIpmFsALSegatP~DlN~mLn~vgghqa-amQ~lkd~In   74 (146)
T 2pwo_A           19 TLNAWVKVVEEKAFS-PEVIPMFSALSEGATPQDLNTMLNTVGGHQA-AMQMLKETIN   74 (146)
T ss_dssp             HHHHHHHHHHHHTTS-TTHHHHHHHHTTTCCHHHHHHHHTTCCSCHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCC-CCHHHHHHHHCCCCCHHHHHHHHHHCCCCHH-HHHHHHHHHH
T ss_conf             899999999860578-2120689997189875989999986467288-9999999987


No 46 
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 1yoj_A 1yom_A* 3dqw_A* 3g6h_A* ...
Probab=20.60  E-value=15  Score=15.39  Aligned_cols=23  Identities=17%  Similarity=0.405  Sum_probs=19.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             22402468888999998647765
Q gi|254781111|r   71 TALRVGAAIECIHCYSLIHDDLP   93 (237)
Q Consensus        71 ~~~~~AaavEllH~asLihDDI~   93 (237)
                      -+..+|.+++.+|.--.||-||.
T Consensus       285 i~~qia~gl~yLH~~~iiHRDLk  307 (452)
T 1fmk_A          285 MAAQIASGMAYVERMNYVHRDLR  307 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99999999999985898457644


No 47 
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=20.57  E-value=17  Score=14.97  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=21.7

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             24024688889999986477654453223
Q gi|254781111|r   72 ALRVGAAIECIHCYSLIHDDLPSMDNGYI  100 (237)
Q Consensus        72 ~~~~AaavEllH~asLihDDI~~~D~s~~  100 (237)
                      +.+++.+++.+|..-.||-||- -+|=-+
T Consensus       217 ~~qi~~aL~ylH~~givHRDLK-P~NiLl  244 (413)
T 3dzo_A          217 TLQVIRLLASLHHYGLVHTYLR-PVDIVL  244 (413)
T ss_dssp             HHHHHHHHHHHHHTTEECSCCC-GGGEEE
T ss_pred             HHHHHHHHHHHHHCCCEECCCC-HHHEEE
T ss_conf             9999999999998893546357-888666


No 48 
>3kfa_A V-ABL, tyrosine-protein kinase transforming protein ABL; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene; HET: B91; 1.22A {Abelson murine leukemia virus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 2g1t_A* 2hiw_A* 2v7a_A* 2f4j_A* 2g2h_A* 2g2f_A* 2g2i_A* ...
Probab=20.21  E-value=24  Score=14.19  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=20.8

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             240246888899999864776544532
Q gi|254781111|r   72 ALRVGAAIECIHCYSLIHDDLPSMDNG   98 (237)
Q Consensus        72 ~~~~AaavEllH~asLihDDI~~~D~s   98 (237)
                      +..+|.+++.+|.--.||-||. -+|=
T Consensus       117 ~~qi~~gl~yLH~~~iiHrDlK-p~NI  142 (288)
T 3kfa_A          117 ATQISSAMEYLEKKNFIHRDLA-ARNC  142 (288)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCCS-GGGE
T ss_pred             HHHHHHHHHHHHCCCCCCCCCC-HHHE
T ss_conf             9999999999831995168887-7887


No 49 
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 2ogv_A 3lco_A*
Probab=20.21  E-value=19  Score=14.75  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=18.7

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             2402468888999998647765
Q gi|254781111|r   72 ALRVGAAIECIHCYSLIHDDLP   93 (237)
Q Consensus        72 ~~~~AaavEllH~asLihDDI~   93 (237)
                      +..+|.+++.+|.--.||-||.
T Consensus       170 ~~qia~gl~ylH~~~IiHRDLK  191 (333)
T 2i1m_A          170 SSQVAQGMAFLASKNCIHRDVA  191 (333)
T ss_dssp             HHHHHHHHHHHHHTTEECSCCS
T ss_pred             HHHHHHHHHHHHCCCEEECCCC
T ss_conf             9999999988760993526676


No 50 
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 1k2p_A
Probab=20.19  E-value=21  Score=14.46  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=19.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             2402468888999998647765
Q gi|254781111|r   72 ALRVGAAIECIHCYSLIHDDLP   93 (237)
Q Consensus        72 ~~~~AaavEllH~asLihDDI~   93 (237)
                      +..+|.+++.+|.--.||-||.
T Consensus       126 ~~qia~gl~yLH~~~iiHrDlK  147 (283)
T 3gen_A          126 CKDVCEAMEYLESKQFLHRDLA  147 (283)
T ss_dssp             HHHHHHHHHHHHHTTCCCSSCS
T ss_pred             HHHHHHHHHHHHHCCEEECCCC
T ss_conf             9999999998864882106676


Done!