PSIBLAST alignment of GI: 254781111 and protein with PDB id: 1rqj
gi|46015527|pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Risedronate Length = 299
>gi|46015528|pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Risedronate Length = 299
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 86/242 (35%), Positives = 129/242 (53%), Gaps = 13/242 (5%)
Query: 4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRY-ALLGGKKIRSFLVTECA 62
P +L+ K+ + L + N ++ ++Y ALLGGK++R FLV
Sbjct: 2 DFPQQLEACVKQANQALSRFIAPL-----PFQNTPVVETMQYGALLGGKRLRPFLVYATG 56
Query: 63 SLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNG 122
+F V+ T AA+ECIH YSLIHDDLP+MD+ +RRG PT H+++ E AI+AG+
Sbjct: 57 HMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDA 116
Query: 123 LLTYAFEIISS-PKTQLKDNIRSQLMLSLTHNIGLQGMLGGQ--MLDIQDEFIDETQVFM 179
L T AF I+S ++ D R ++ L G+ GM GGQ LD + + + +
Sbjct: 117 LQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALER 176
Query: 180 IQKMKTGALMCFACESGAIMAH-ASQNEKERLRCFGENLGIIFQLADDLLDCEED---LP 235
I + KTGAL+ A GA+ A + L + E++G+ FQ+ DD+LD D L
Sbjct: 177 IHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLG 236
Query: 236 KK 237
K+
Sbjct: 237 KR 238