RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781111|ref|YP_003065524.1| geranyltranstransferase
protein [Candidatus Liberibacter asiaticus str. psy62]
(237 letters)
>gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional.
Length = 299
Score = 152 bits (386), Expect = 7e-38
Identities = 86/229 (37%), Positives = 129/229 (56%), Gaps = 10/229 (4%)
Query: 6 PSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRY-ALLGGKKIRSFLVTECASL 64
P +LQ ++ + L + N ++ A++Y ALLGGK++R FLV +
Sbjct: 4 PQQLQACVQQANQALSRFIAP-----LPFQNTPVVEAMQYGALLGGKRLRPFLVYATGQM 58
Query: 65 FNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLL 124
F V+ T AA+ECIH YSLIHDDLP+MD+ +RRG PT H+++ E AI+AG+ L
Sbjct: 59 FGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQ 118
Query: 125 TYAFEIIS-SPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF--IDETQVFMIQ 181
T AF I+S +P ++ D R ++ L G+ GM GGQ LD++ E + + I
Sbjct: 119 TLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQALDLEAEGKQVPLDALERIH 178
Query: 182 KMKTGALMCFACESGAIMA-HASQNEKERLRCFGENLGIIFQLADDLLD 229
+ KTGAL+ A GA+ A + L + E++G+ FQ+ DD+LD
Sbjct: 179 RHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILD 227
>gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component
II. Members of this family are component II of the
heterodimeric heptaprenyl diphosphate synthase. The
trusted cutoff was set such that all members identified
are encoded near to a recognizable gene for component I
(in Pfam family pfam07307). This enzyme acts in
menaquinone-7 isoprenoid side chain biosynthesis.
Length = 319
Score = 82.8 bits (205), Expect = 8e-17
Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 19/195 (9%)
Query: 49 GGKKIRSFLVTECASLFNVNHLTALR-VGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTV 107
GGK+IR V A F L A++ V A+E IH SL+HDD+ +D+ +RRG+PT+
Sbjct: 42 GGKRIRPVFVL-LAGKFGDYDLDAIKHVAVALELIHMASLVHDDV--IDDADLRRGRPTI 98
Query: 108 HIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDI 167
++ A+ G+ L + E + T++KD R+ +LS T + G++ I
Sbjct: 99 KSKWGNRIAMYTGDYLFAKSLETM----TEIKD-PRAHQILSHTIV----EVCRGEIEQI 149
Query: 168 QDEFIDETQV---FMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLA 224
+D++ + + K KT L+ +C+ GAI + A++ ++L FG +G+ +Q+
Sbjct: 150 KDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQIT 209
Query: 225 DDLLD---CEEDLPK 236
DD+LD EE+L K
Sbjct: 210 DDILDFVGTEEELGK 224
>gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional.
Length = 323
Score = 80.3 bits (198), Expect = 4e-16
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 8/185 (4%)
Query: 49 GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVH 108
GGK+IR + A + + A IE IH +L+HDD+ +D +RRGK T +
Sbjct: 43 GGKRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLHDDV--VDESDMRRGKATAN 100
Query: 109 IQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQ 168
+ +++ G+ + T AF++++S +++ ++S N+ +G + Q++++
Sbjct: 101 AAFGNAASVLVGDFIYTRAFQMMTS-----LGSLKVLEVMSEAVNVIAEGEVL-QLMNVN 154
Query: 169 DEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLL 228
D I E + KT L A + I+A + +++ L+ +G LG FQL DDLL
Sbjct: 155 DPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLL 214
Query: 229 DCEED 233
D D
Sbjct: 215 DYSAD 219
>gnl|CDD|178448 PLN02857, PLN02857, octaprenyl-diphosphate synthase.
Length = 416
Score = 75.3 bits (185), Expect = 1e-14
Identities = 70/250 (28%), Positives = 112/250 (44%), Gaps = 53/250 (21%)
Query: 10 QENSKRIDTILDDLLLQTASHMQTQHNDRLLSAI--RYALL----------GGKKIRS-- 55
E+ + I L +L A +Q Q ND L S + +L GGK++R
Sbjct: 86 AESKEPIS--LSELFEPVADDLQ-QLNDNLQSIVGAENPVLMSAAEQIFGAGGKRMRPAL 142
Query: 56 -FLVTEC-ASLFNVNHLTA--LRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQY 111
FLV+ A L + LT R+ E IH SLIHDD+ +D +RRGK TVH Y
Sbjct: 143 VFLVSRATAELAGLKELTTEHRRLAEITEMIHTASLIHDDV--LDESDMRRGKETVHQLY 200
Query: 112 DEVTAIIAGNGLLTYA---------FEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGG 162
A++AG+ + + E+I +KD ++ +
Sbjct: 201 GTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVIKDFASGEIKQA------------S 248
Query: 163 QMLDIQ---DEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGI 219
+ D DE++ ++ KT +L+ + +S AI + + KE++ +G+NLG+
Sbjct: 249 SLFDCDVTLDEYLLKSY------YKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGL 302
Query: 220 IFQLADDLLD 229
FQ+ DD+LD
Sbjct: 303 AFQVVDDILD 312
>gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase. Members
of this family all are from cyanobacteria or
plastid-containing eukaryotes. A member from Arabidopsis
(where both plastoquinone and ubiquinone contain the
C(45) prenyl moiety) was characterized by heterologous
expression as a solanesyl diphosphate synthase.
Length = 322
Score = 69.0 bits (169), Expect = 1e-12
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 35/196 (17%)
Query: 49 GGKKIRS---FLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKP 105
GGK++R LV+ + R+ E IH SL+HDD+ +D RRG
Sbjct: 43 GGKRLRPAIVLLVSRATAEQQELTPRHRRLAEITEMIHTASLVHDDV--IDESDTRRGIE 100
Query: 106 TVHIQYDEVTAIIAGNGLLTYA---------FEIISSPKTQLKDNIRSQLMLSLTH---N 153
TVH + A++AG+ L A E++ + D ++ L +
Sbjct: 101 TVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGEIKQGLNQFDSD 160
Query: 154 IGLQGMLGGQMLDIQDEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCF 213
+ L +++++++ KT +L+ + ++ A+++ L +
Sbjct: 161 LSL------------EDYLEKSF------YKTASLVAASSKAAAVLSDVPSQVANDLYEY 202
Query: 214 GENLGIIFQLADDLLD 229
G++LG+ FQ+ DD+LD
Sbjct: 203 GKHLGLAFQVVDDILD 218
>gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase.
Length = 422
Score = 49.2 bits (117), Expect = 1e-06
Identities = 43/152 (28%), Positives = 81/152 (53%), Gaps = 12/152 (7%)
Query: 80 ECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLK 139
E IH SL+HDD+ +D+ RRG ++++ +++AG+ LL+ A +++ K
Sbjct: 171 EMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNT-- 226
Query: 140 DNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMIQKM--KTGALMCFACESGA 197
+ S L ++ H + + M Q+ +++ + + +QK KT +L+ +C++ A
Sbjct: 227 -EVVSLLATAVEHLVTGETM---QITSSREQ--RRSMDYYMQKTYYKTASLISNSCKAVA 280
Query: 198 IMAHASQNEKERLRCFGENLGIIFQLADDLLD 229
I+A + +G NLG+ FQL DD+LD
Sbjct: 281 ILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLD 312
>gnl|CDD|173307 PRK14846, truB, tRNA pseudouridine synthase B; Provisional.
Length = 345
Score = 29.6 bits (66), Expect = 0.82
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 9 LQENSKRIDTILDDLLLQTASHMQTQH 35
L+E S +I+ ILDD+L+ A+ Q Q
Sbjct: 220 LEEKSIKIEAILDDILVLDATDSQAQQ 246
>gnl|CDD|149997 pfam09149, DUF1935, Domain of unknown function (DUF1935). Members
of this family are found in various bacterial and
eukaryotic hypothetical proteins, as well as in the
cysteine protease calpain. Their exact function has not,
as yet, been defined.
Length = 98
Score = 28.7 bits (65), Expect = 1.2
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 101 RRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPK 135
+ G P+V + EVT GLL F I+
Sbjct: 1 KNGGPSV--KGGEVTPCFKEGGLL---FRIVDEKG 30
>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large
subunit.
Length = 813
Score = 28.6 bits (64), Expect = 1.6
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 18 TILDDLLLQTASHMQTQHNDRLLSAIRYAL--LGGKKIRSFLVTECASLFNVNHLTALRV 75
+ LD+L +TA+ M T H D + A R A+ L +SF T +VN + L+
Sbjct: 54 SQLDELAAETAAAMTTNHPDYAILAARIAVSNLHKNTKKSFSETVKDMYNHVNERSGLKA 113
Query: 76 GAAIECIHCYSLIHDDLPSMD 96
+ + Y +I + +D
Sbjct: 114 PLIADDV--YDIIMKNAARLD 132
>gnl|CDD|182139 PRK09908, PRK09908, xanthine dehydrogenase subunit XdhC;
Provisional.
Length = 159
Score = 28.3 bits (63), Expect = 1.9
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 161 GGQMLDIQDEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLR 211
GG++ +Q + GA+ C C G IMA + K R +
Sbjct: 85 GGKLSHVQQAYAKS-----------GAVQCGFCTPGLIMATTAMLAKPREK 124
>gnl|CDD|183974 PRK13321, PRK13321, pantothenate kinase; Reviewed.
Length = 256
Score = 27.5 bits (62), Expect = 2.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 3 GGLPSKLQENSKRIDTILDDLLLQ 26
GG S + + S+ D + DLLL+
Sbjct: 222 GGFASLIAKESRCFDHVDPDLLLE 245
>gnl|CDD|166304 PLN02663, PLN02663, hydroxycinnamoyl-CoA:shikimate/quinate
hydroxycinnamoyltransferase.
Length = 431
Score = 27.6 bits (61), Expect = 3.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 88 IHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAG 120
IHD L MD+ Y+R + +Q D ++A++ G
Sbjct: 324 IHDALVRMDDDYLRSALDYLELQPD-LSALVRG 355
>gnl|CDD|179300 PRK01528, truB, tRNA pseudouridine synthase B; Provisional.
Length = 292
Score = 27.2 bits (60), Expect = 4.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 7 SKLQENSKRIDTILDDLLLQTASHMQTQ 34
+ L+E S +I+ ILDD+L+ A+ Q Q
Sbjct: 218 NSLEEKSIKIEAILDDILVLDATDEQAQ 245
>gnl|CDD|128759 smart00483, POLXc, DNA polymerase X family. includes vertebrate
polymerase beta and terminal
deoxynucleotidyltransferases.
Length = 334
Score = 27.0 bits (60), Expect = 4.6
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 120 GNGLLTYAFEIISSPKTQLKDNIRS--------QLMLSLTHNIG----LQGM--LGGQML 165
N + A EI++ +N R ++ SL I L+G+ +G ++
Sbjct: 2 LNRGIIDALEILAENYEVFGENKRKCSYFRKAASVLKSLPFPINSMKDLKGLPGIGDKIK 61
Query: 166 DIQDEFIDETQVFMIQKMKT 185
+E I+ + + ++
Sbjct: 62 KKIEEIIETGKSSKVLEILN 81
>gnl|CDD|151892 pfam11453, DUF2950, Protein of unknown function (DUF2950). This is
a bacterial family of uncharacterized proteins.
Length = 266
Score = 26.1 bits (58), Expect = 7.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 110 QYDEVTAIIAGNGLLTYAFEIISSP 134
Q + G+G+L YA ++ISSP
Sbjct: 125 QREYAEQDRDGDGVLEYAQKLISSP 149
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 26.0 bits (57), Expect = 8.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 145 QLMLSLTHNIGLQGMLGGQMLDIQDEFIDETQVF 178
+L+ +LT NI + G + QDEFI Q F
Sbjct: 175 ELIFTLTRNITYRAAFGSSSNEGQDEFIKILQEF 208
>gnl|CDD|184992 PRK15032, PRK15032, trimethylamine N-oxide reductase cytochrome
c-type subunit; Provisional.
Length = 390
Score = 26.1 bits (57), Expect = 9.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 81 CIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEI 130
CI C+ I LP M +G+ + Q+DE+ A +G Y+ +I
Sbjct: 170 CIDCHKGIAHQLPDMSSGFRK--------QFDELRASANDSGDTLYSIDI 211
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.138 0.399
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,771,942
Number of extensions: 232890
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 24
Length of query: 237
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 147
Effective length of database: 4,049,753
Effective search space: 595313691
Effective search space used: 595313691
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)