RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781111|ref|YP_003065524.1| geranyltranstransferase protein [Candidatus Liberibacter asiaticus str. psy62] (237 letters) >gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional. Length = 299 Score = 152 bits (386), Expect = 7e-38 Identities = 86/229 (37%), Positives = 129/229 (56%), Gaps = 10/229 (4%) Query: 6 PSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRY-ALLGGKKIRSFLVTECASL 64 P +LQ ++ + L + N ++ A++Y ALLGGK++R FLV + Sbjct: 4 PQQLQACVQQANQALSRFIAP-----LPFQNTPVVEAMQYGALLGGKRLRPFLVYATGQM 58 Query: 65 FNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLL 124 F V+ T AA+ECIH YSLIHDDLP+MD+ +RRG PT H+++ E AI+AG+ L Sbjct: 59 FGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQ 118 Query: 125 TYAFEIIS-SPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF--IDETQVFMIQ 181 T AF I+S +P ++ D R ++ L G+ GM GGQ LD++ E + + I Sbjct: 119 TLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQALDLEAEGKQVPLDALERIH 178 Query: 182 KMKTGALMCFACESGAIMA-HASQNEKERLRCFGENLGIIFQLADDLLD 229 + KTGAL+ A GA+ A + L + E++G+ FQ+ DD+LD Sbjct: 179 RHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILD 227 >gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis. Length = 319 Score = 82.8 bits (205), Expect = 8e-17 Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 19/195 (9%) Query: 49 GGKKIRSFLVTECASLFNVNHLTALR-VGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTV 107 GGK+IR V A F L A++ V A+E IH SL+HDD+ +D+ +RRG+PT+ Sbjct: 42 GGKRIRPVFVL-LAGKFGDYDLDAIKHVAVALELIHMASLVHDDV--IDDADLRRGRPTI 98 Query: 108 HIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDI 167 ++ A+ G+ L + E + T++KD R+ +LS T + G++ I Sbjct: 99 KSKWGNRIAMYTGDYLFAKSLETM----TEIKD-PRAHQILSHTIV----EVCRGEIEQI 149 Query: 168 QDEFIDETQV---FMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLA 224 +D++ + + K KT L+ +C+ GAI + A++ ++L FG +G+ +Q+ Sbjct: 150 KDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQIT 209 Query: 225 DDLLD---CEEDLPK 236 DD+LD EE+L K Sbjct: 210 DDILDFVGTEEELGK 224 >gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional. Length = 323 Score = 80.3 bits (198), Expect = 4e-16 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 8/185 (4%) Query: 49 GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVH 108 GGK+IR + A + + A IE IH +L+HDD+ +D +RRGK T + Sbjct: 43 GGKRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLHDDV--VDESDMRRGKATAN 100 Query: 109 IQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQ 168 + +++ G+ + T AF++++S +++ ++S N+ +G + Q++++ Sbjct: 101 AAFGNAASVLVGDFIYTRAFQMMTS-----LGSLKVLEVMSEAVNVIAEGEVL-QLMNVN 154 Query: 169 DEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLL 228 D I E + KT L A + I+A + +++ L+ +G LG FQL DDLL Sbjct: 155 DPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLL 214 Query: 229 DCEED 233 D D Sbjct: 215 DYSAD 219 >gnl|CDD|178448 PLN02857, PLN02857, octaprenyl-diphosphate synthase. Length = 416 Score = 75.3 bits (185), Expect = 1e-14 Identities = 70/250 (28%), Positives = 112/250 (44%), Gaps = 53/250 (21%) Query: 10 QENSKRIDTILDDLLLQTASHMQTQHNDRLLSAI--RYALL----------GGKKIRS-- 55 E+ + I L +L A +Q Q ND L S + +L GGK++R Sbjct: 86 AESKEPIS--LSELFEPVADDLQ-QLNDNLQSIVGAENPVLMSAAEQIFGAGGKRMRPAL 142 Query: 56 -FLVTEC-ASLFNVNHLTA--LRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQY 111 FLV+ A L + LT R+ E IH SLIHDD+ +D +RRGK TVH Y Sbjct: 143 VFLVSRATAELAGLKELTTEHRRLAEITEMIHTASLIHDDV--LDESDMRRGKETVHQLY 200 Query: 112 DEVTAIIAGNGLLTYA---------FEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGG 162 A++AG+ + + E+I +KD ++ + Sbjct: 201 GTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVIKDFASGEIKQA------------S 248 Query: 163 QMLDIQ---DEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGI 219 + D DE++ ++ KT +L+ + +S AI + + KE++ +G+NLG+ Sbjct: 249 SLFDCDVTLDEYLLKSY------YKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGL 302 Query: 220 IFQLADDLLD 229 FQ+ DD+LD Sbjct: 303 AFQVVDDILD 312 >gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase. Length = 322 Score = 69.0 bits (169), Expect = 1e-12 Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 35/196 (17%) Query: 49 GGKKIRS---FLVTECASLFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKP 105 GGK++R LV+ + R+ E IH SL+HDD+ +D RRG Sbjct: 43 GGKRLRPAIVLLVSRATAEQQELTPRHRRLAEITEMIHTASLVHDDV--IDESDTRRGIE 100 Query: 106 TVHIQYDEVTAIIAGNGLLTYA---------FEIISSPKTQLKDNIRSQLMLSLTH---N 153 TVH + A++AG+ L A E++ + D ++ L + Sbjct: 101 TVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGEIKQGLNQFDSD 160 Query: 154 IGLQGMLGGQMLDIQDEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCF 213 + L +++++++ KT +L+ + ++ A+++ L + Sbjct: 161 LSL------------EDYLEKSF------YKTASLVAASSKAAAVLSDVPSQVANDLYEY 202 Query: 214 GENLGIIFQLADDLLD 229 G++LG+ FQ+ DD+LD Sbjct: 203 GKHLGLAFQVVDDILD 218 >gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase. Length = 422 Score = 49.2 bits (117), Expect = 1e-06 Identities = 43/152 (28%), Positives = 81/152 (53%), Gaps = 12/152 (7%) Query: 80 ECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLK 139 E IH SL+HDD+ +D+ RRG ++++ +++AG+ LL+ A +++ K Sbjct: 171 EMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNT-- 226 Query: 140 DNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMIQKM--KTGALMCFACESGA 197 + S L ++ H + + M Q+ +++ + + +QK KT +L+ +C++ A Sbjct: 227 -EVVSLLATAVEHLVTGETM---QITSSREQ--RRSMDYYMQKTYYKTASLISNSCKAVA 280 Query: 198 IMAHASQNEKERLRCFGENLGIIFQLADDLLD 229 I+A + +G NLG+ FQL DD+LD Sbjct: 281 ILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLD 312 >gnl|CDD|173307 PRK14846, truB, tRNA pseudouridine synthase B; Provisional. Length = 345 Score = 29.6 bits (66), Expect = 0.82 Identities = 12/27 (44%), Positives = 18/27 (66%) Query: 9 LQENSKRIDTILDDLLLQTASHMQTQH 35 L+E S +I+ ILDD+L+ A+ Q Q Sbjct: 220 LEEKSIKIEAILDDILVLDATDSQAQQ 246 >gnl|CDD|149997 pfam09149, DUF1935, Domain of unknown function (DUF1935). Members of this family are found in various bacterial and eukaryotic hypothetical proteins, as well as in the cysteine protease calpain. Their exact function has not, as yet, been defined. Length = 98 Score = 28.7 bits (65), Expect = 1.2 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%) Query: 101 RRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPK 135 + G P+V + EVT GLL F I+ Sbjct: 1 KNGGPSV--KGGEVTPCFKEGGLL---FRIVDEKG 30 >gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit. Length = 813 Score = 28.6 bits (64), Expect = 1.6 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 18 TILDDLLLQTASHMQTQHNDRLLSAIRYAL--LGGKKIRSFLVTECASLFNVNHLTALRV 75 + LD+L +TA+ M T H D + A R A+ L +SF T +VN + L+ Sbjct: 54 SQLDELAAETAAAMTTNHPDYAILAARIAVSNLHKNTKKSFSETVKDMYNHVNERSGLKA 113 Query: 76 GAAIECIHCYSLIHDDLPSMD 96 + + Y +I + +D Sbjct: 114 PLIADDV--YDIIMKNAARLD 132 >gnl|CDD|182139 PRK09908, PRK09908, xanthine dehydrogenase subunit XdhC; Provisional. Length = 159 Score = 28.3 bits (63), Expect = 1.9 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 11/51 (21%) Query: 161 GGQMLDIQDEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEKERLR 211 GG++ +Q + GA+ C C G IMA + K R + Sbjct: 85 GGKLSHVQQAYAKS-----------GAVQCGFCTPGLIMATTAMLAKPREK 124 >gnl|CDD|183974 PRK13321, PRK13321, pantothenate kinase; Reviewed. Length = 256 Score = 27.5 bits (62), Expect = 2.7 Identities = 9/24 (37%), Positives = 14/24 (58%) Query: 3 GGLPSKLQENSKRIDTILDDLLLQ 26 GG S + + S+ D + DLLL+ Sbjct: 222 GGFASLIAKESRCFDHVDPDLLLE 245 >gnl|CDD|166304 PLN02663, PLN02663, hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase. Length = 431 Score = 27.6 bits (61), Expect = 3.0 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Query: 88 IHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAG 120 IHD L MD+ Y+R + +Q D ++A++ G Sbjct: 324 IHDALVRMDDDYLRSALDYLELQPD-LSALVRG 355 >gnl|CDD|179300 PRK01528, truB, tRNA pseudouridine synthase B; Provisional. Length = 292 Score = 27.2 bits (60), Expect = 4.3 Identities = 12/28 (42%), Positives = 19/28 (67%) Query: 7 SKLQENSKRIDTILDDLLLQTASHMQTQ 34 + L+E S +I+ ILDD+L+ A+ Q Q Sbjct: 218 NSLEEKSIKIEAILDDILVLDATDEQAQ 245 >gnl|CDD|128759 smart00483, POLXc, DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases. Length = 334 Score = 27.0 bits (60), Expect = 4.6 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 14/80 (17%) Query: 120 GNGLLTYAFEIISSPKTQLKDNIRS--------QLMLSLTHNIG----LQGM--LGGQML 165 N + A EI++ +N R ++ SL I L+G+ +G ++ Sbjct: 2 LNRGIIDALEILAENYEVFGENKRKCSYFRKAASVLKSLPFPINSMKDLKGLPGIGDKIK 61 Query: 166 DIQDEFIDETQVFMIQKMKT 185 +E I+ + + ++ Sbjct: 62 KKIEEIIETGKSSKVLEILN 81 >gnl|CDD|151892 pfam11453, DUF2950, Protein of unknown function (DUF2950). This is a bacterial family of uncharacterized proteins. Length = 266 Score = 26.1 bits (58), Expect = 7.6 Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 110 QYDEVTAIIAGNGLLTYAFEIISSP 134 Q + G+G+L YA ++ISSP Sbjct: 125 QREYAEQDRDGDGVLEYAQKLISSP 149 >gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase. Length = 516 Score = 26.0 bits (57), Expect = 8.3 Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 145 QLMLSLTHNIGLQGMLGGQMLDIQDEFIDETQVF 178 +L+ +LT NI + G + QDEFI Q F Sbjct: 175 ELIFTLTRNITYRAAFGSSSNEGQDEFIKILQEF 208 >gnl|CDD|184992 PRK15032, PRK15032, trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional. Length = 390 Score = 26.1 bits (57), Expect = 9.4 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 8/50 (16%) Query: 81 CIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEI 130 CI C+ I LP M +G+ + Q+DE+ A +G Y+ +I Sbjct: 170 CIDCHKGIAHQLPDMSSGFRK--------QFDELRASANDSGDTLYSIDI 211 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.138 0.399 Gapped Lambda K H 0.267 0.0666 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,771,942 Number of extensions: 232890 Number of successful extensions: 383 Number of sequences better than 10.0: 1 Number of HSP's gapped: 373 Number of HSP's successfully gapped: 24 Length of query: 237 Length of database: 5,994,473 Length adjustment: 90 Effective length of query: 147 Effective length of database: 4,049,753 Effective search space: 595313691 Effective search space used: 595313691 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.5 bits)