RPSBLAST alignment of GI: 254781111 and protein with PDBid: 1uby
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367
Score = 94.2 bits (233), Expect = 2e-20
Identities = 49/242 (20%), Positives = 84/242 (34%), Gaps = 17/242 (7%)
Query: 7 SKLQENSKRIDTILDDLLLQTASHMQTQHN-DRLLSAIRYALLGGKKIRSFLVTECASLF 65
+ +E I+ DL H + RL ++Y GGK R V
Sbjct: 26 REREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNAPGGKCNRGLTVVAAYREL 85
Query: 66 N-------VNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAII 118
+ + AL VG IE SL+ DD+ MD RRG+ + + I
Sbjct: 86 SGPGQKDAESLRCALAVGWCIELFQAASLVADDI--MDQSLTRRGQLCWYKKEGVGLDAI 143
Query: 119 AGNGLLTYA-FEIISSPKTQLKDNIRSQLMLSLTHN----IGLQGMLGGQMLDIQDEFID 173
+ LL + + ++ Q + + T + ++ + +
Sbjct: 144 NDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203
Query: 174 ETQVFMIQKMKTGALMCFACESGAIMAHASQNEKER--LRCFGENLGIIFQLADDLLDCE 231
E + I K KT + + A+ +++E + +G FQ+ DD LDC
Sbjct: 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCF 263
Query: 232 ED 233
D
Sbjct: 264 GD 265