RPSBLAST alignment of GI: 254781111 and protein with PDBid: 3ipi

>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Length = 295

 Score = 72.8 bits (177), Expect = 6e-14
 Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 11/210 (5%)

Query: 29  SHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLFNVNHLTALRVGAAIECIHCYSL 87
             +    +  L   + +    GGK+IR  ++   + + + ++  +L    A+E +H  SL
Sbjct: 20  ESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASL 79

Query: 88  IHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEIISSPKTQLKDNIRSQLM 147
           IHDD   +D G +RR  P+   ++    A++ G+ L+  +   I             +++
Sbjct: 80  IHDD--LLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFI--------SPYGEKVI 129

Query: 148 LSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMIQKMKTGALMCFACESGAIMAHASQNEK 207
                            L ++DE   E   F     KT +L   +   GA    A +   
Sbjct: 130 QDFGKAGMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELA 189

Query: 208 ERLRCFGENLGIIFQLADDLLDCEEDLPKK 237
           ER   FG  LG  +Q+ DD+L+  E +  K
Sbjct: 190 ERFSHFGNALGTAYQIVDDILEFLEVVEGK 219