RPSBLAST alignment of GI: 254781111 and protein with PDBid: 3llw

>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} Length = 311

 Score =  147 bits (371), Expect = 2e-36
 Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 17/237 (7%)

Query: 7   SKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECAS-- 63
           S      +R ++ L +  L   S      +  L  A    +L GGK+ R  L        
Sbjct: 9   SFYYNECERFESFLKNHHLHLESF-----HPYLEKAFFEMVLNGGKRFRPKLFLAVLCAL 63

Query: 64  ----LFNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIA 119
                ++       ++  +IEC+H YSLIHDDLP MDN  +RR  PT+H +YDE TA++ 
Sbjct: 64  VGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLI 123

Query: 120 GNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF--IDETQV 177
           G+ L TY+FE++      L+ +I  +L+  L+ N G++GM+ GQ LD   E   ++  Q+
Sbjct: 124 GDALNTYSFELL--SNALLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQL 181

Query: 178 FMIQKMKTGALMCFACESGAIMAHASQNEKER-LRCFGENLGIIFQLADDLLDCEED 233
             + + KT  L+  +   G + +     E  + L+ FG  +G+ FQ+ DD++D  +D
Sbjct: 182 TFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQD 238