RPSBLAST alignment of GI: 254781111 and protein with PDBid: 3m0g
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, isoprene biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297
Score = 154 bits (390), Expect = 1e-38
Identities = 84/233 (36%), Positives = 129/233 (55%), Gaps = 15/233 (6%)
Query: 5 LPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGGKKIRSFLVTECASL 64
L +L+E ++T + + L A+ YA GGK++R+FL E A++
Sbjct: 3 LSERLKEVQDAVETAMAAAI-------GRLPAGDLRDAMAYAAQGGKRLRAFLAIESAAI 55
Query: 65 FNVNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLL 124
++ A+ A+E +H YSL+HDD+P MDN +RRG PTVH ++D+ TA++AG+ L
Sbjct: 56 HGISMAQAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQ 115
Query: 125 TYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEFID----ETQVFMI 180
T AFE+ + P R L+ +L G +GM+ GQ LDI E ++ +
Sbjct: 116 TLAFELCTDP-VLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRL 174
Query: 181 QKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED 233
Q KTGAL+ FA ++GAI+A A + L + LG+ FQ+ADD+LD E +
Sbjct: 175 QAGKTGALISFAAQAGAILAGADRGP---LTAYATALGLAFQIADDILDVEGN 224