RPSBLAST alignment of GI: 254781111 and protein with PDBid: 3n3d

>3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis} Length = 335

 Score =  130 bits (329), Expect = 2e-31
 Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 16/236 (6%)

Query: 1   MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVT 59
           ++  L  +  +   ++  + D LL           N  +   I   L  GGK +R     
Sbjct: 3   LDRQLWRQFPQVEPQLTALQDYLLRTVQLD-----NQPIHHKILALLKSGGKLLRPGYFY 57

Query: 60  ECASLFNVNHLTALRVGA-AIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAII 118
             ++  N      L+ GA AIE +H  +LIHDD+  +D+   RRG  T+ + Y +  AI 
Sbjct: 58  LFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDV--IDDSPTRRGVRTIQMTYGQRNAIY 115

Query: 119 AGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQ-DEFIDETQV 177
           AG+ + T  F+ +    T          + +    +          +D+   E I     
Sbjct: 116 AGDFMFTVYFDQVLKSTTDRSL------IQNHIDAMHRILQGELHQMDLNYREDITLDAY 169

Query: 178 FMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED 233
                 KT  L   +C  GA +A A Q+  +R R  G  +G  +Q+ DD+LD   D
Sbjct: 170 LNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGD 225