RPSBLAST alignment of GI: 254781111 and protein with PDBid: 3npk

>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291
 Score =  147 bits (372), Expect = 2e-36
 Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 13  SKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLFNVNHL- 70
           S  +  +    L +    +++ H      A+   L  GGK  R+ L+           L 
Sbjct: 2   SLNLKELFIHHLEKNLPKVESFH-PFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLN 60

Query: 71  TALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEI 130
            AL V  A+E IH YSLIHDDLP+MDN   RRG PT+H  YDE TAI+ G+ L T AF +
Sbjct: 61  QALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLV 120

Query: 131 ISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF--IDETQVFMIQKMKTGAL 188
           +S     LKD I+ +L+ +L  N GL GM+ GQ +D   E   +   ++  +   KT  L
Sbjct: 121 LSH--AHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARL 178

Query: 189 MCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED 233
           +  A + G  +   +  E  ++   G  LG+IFQ+ DD++D    
Sbjct: 179 IAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTS 223