RPSBLAST alignment of GI: 254781111 and protein with PDBid: 3npk
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291
Score = 147 bits (372), Expect = 2e-36
Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 7/225 (3%)
Query: 13 SKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLFNVNHL- 70
S + + L + +++ H A+ L GGK R+ L+ L
Sbjct: 2 SLNLKELFIHHLEKNLPKVESFH-PFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLN 60
Query: 71 TALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTYAFEI 130
AL V A+E IH YSLIHDDLP+MDN RRG PT+H YDE TAI+ G+ L T AF +
Sbjct: 61 QALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLV 120
Query: 131 ISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDEF--IDETQVFMIQKMKTGAL 188
+S LKD I+ +L+ +L N GL GM+ GQ +D E + ++ + KT L
Sbjct: 121 LSH--AHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARL 178
Query: 189 MCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED 233
+ A + G + + E ++ G LG+IFQ+ DD++D
Sbjct: 179 IAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTS 223