RPSBLAST alignment of GI: 254781111 and protein with PDBid: 3p8r
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302
Score = 149 bits (378), Expect = 4e-37
Identities = 84/231 (36%), Positives = 118/231 (51%), Gaps = 10/231 (4%)
Query: 8 KLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVTECASLFN 66
L +R + LD L + L+ A+RY LL GGK+ R +LV +
Sbjct: 12 ALSSYQQRNNQQLDQWLNR-----IPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLG 66
Query: 67 VNHLTALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAIIAGNGLLTY 126
+A+ECIH YSLIHDDLP+MD+ +RRGKPT HIQ+DE TAI+ G+ L T
Sbjct: 67 CELSDLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTL 126
Query: 127 AFEI-ISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDI--QDEFIDETQVFMIQKM 183
AF I + + R ++ +L G QGM GQ LD+ ++ I ++ I +
Sbjct: 127 AFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRN 186
Query: 184 KTGALMCFACESGAI-MAHASQNEKERLRCFGENLGIIFQLADDLLDCEED 233
KTGALM A GA+ + L + E +G+ FQ+ DD+LD D
Sbjct: 187 KTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISD 237