RPSBLAST alignment of GI: 254781111 and protein with PDBid: 3pde

>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309

 Score =  148 bits (373), Expect = 1e-36
 Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 13/238 (5%)

Query: 1   MNGGLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALL-GGKKIRSFLVT 59
           +N  L +   +    ++  L   +L  +       + +L +A+ Y++L GGK++R  L  
Sbjct: 4   INARLIAFEDQWVPALNAPLKQAILADSQ------DAQLAAAMTYSVLAGGKRLRPLLTV 57

Query: 60  ECASLFNVNHLT--ALRVGAAIECIHCYSLIHDDLPSMDNGYIRRGKPTVHIQYDEVTAI 117
                  V  +     R   A+E +H YSLIHDDLP+MDN  +RRG+PT H+++    A 
Sbjct: 58  ATMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMAT 117

Query: 118 IAGNGLLTYAFEIISSPKTQLKDNIRSQLMLSLTHNIGLQGMLGGQMLDIQDE--FIDET 175
           +AG+GLLT AF+ ++   T L   +++ L+ +L    G  GM+ GQ  DIQ E   +  +
Sbjct: 118 LAGDGLLTLAFQWLT--ATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLS 175

Query: 176 QVFMIQKMKTGALMCFACESGAIMAHASQNEKERLRCFGENLGIIFQLADDLLDCEED 233
           Q+ ++ K KTGAL+ +A ++G I+  A + +      F +  G+ FQ+ DD+LD    
Sbjct: 176 QLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSS 233