HHsearch alignment for GI: 254781112 and conserved domain: COG0834
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].
Probab=100.00 E-value=2.7e-31 Score=213.21 Aligned_cols=227 Identities=33% Similarity=0.524 Sum_probs=187.1
Q ss_pred HHHHHCCCEEEEECCCC-CCEEEEEECCC-CCEEEEEEEEHHHHHHHCCCC--CCCCCCCHHHHHHHHHCCCCCCCH-HC
Q ss_conf 87885895899962899-87248704699-848898852167899762998--555668988988643103221100-00
Q gi|254781112|r 35 FRTEDQSALRVGTDGIY-PPHSFHAQDGR-GELTGFDIDLIKEVAHRLNLK--VEFFETAVSGLITGLDTNRYDVLV-NV 109 (274)
Q Consensus 35 ~~~~~~~~l~v~~~~~~-pP~~~~~~d~~-g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~~~~l~~g~~D~~~-~~ 109 (274)
T Consensus 28 ~~~~~~~~~~v~~~~~~~~p~~~~~--~~~~~~~G~dvdl~~~ia~~l~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 105 (275)
T COG0834 28 DKIKARGKLRVGTEATYAPPFEFLD--AKGGKLVGFDVDLAKAIAKRLGGDKKVEFVPVAWDGLIPALKAGKVDIIIAGM 105 (275)
T ss_pred HHHHHCCEEEEEECCCCCCCCEEEC--CCCCEEEEEHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEECC
T ss_conf 6664477599997268889841023--88870676529999999998467742488506887763898779988898567
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEECCCH--HHHHHHCC--CCCCEEECCHHHHHHHH
Q ss_conf 3675675420023332222222221112222-1111123343202310101--22332013--45421336855777755
Q gi|254781112|r 110 AITPERQKKYDFSIPYIAHRVLLVVRSDQQD-IRSFKDLTDKTVAQILGTD--LSRFAKEL--KSHLVFSHNFEQSLQLL 184 (274)
Q Consensus 110 ~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~-~~~~~dL~g~~V~~~~g~~--~~~~l~~~--~~~~~~~~~~~~~~~~l 184 (274)
T Consensus 106 ~~t~~r~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~DL~gk~v~v~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 185 (275)
T COG0834 106 TITPERKKKVDFSDPYYYSGQVLLVKKDSDIGIKSLEDLKGKKVGVQLGTTDEAEEKAKKPGPNAKIVAYDSNAEALLAL 185 (275)
T ss_pred CCCHHHHHCCCCCCCEEECCEEEEEECCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
T ss_conf 36877752005677736546589997688545589889589769996684588887764046774499818889999999
Q ss_pred HHHHHHCCCCCHHHHHHH--HHHCCCCCCCEEECCCCCC-CCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 443210036655899999--9845876673262367768-77079998189-9899999999999999798599999876
Q gi|254781112|r 185 LSKRTDATMIPDIPFFNF--LERRPHDGNLFKIADRMKD-NSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274)
Q Consensus 185 ~~grvD~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274)
T Consensus 186 ~~Gr~Da~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l~~l~~~G~~~~i~~kw 262 (275)
T COG0834 186 KNGRADAVVSDSAVLAGLKLLKKNPGL---YVLLVFPGLSVEYLGIALRKGDDPELLEAVNKALKELKADGTLQKISDKW 262 (275)
T ss_pred HCCCCCEEEECHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 849988997068887666653015565---32114556654320001246855999999999999998197099999986
Q ss_pred CCCCCC
Q ss_conf 788877
Q gi|254781112|r 261 FDKNII 266 (274)
Q Consensus 261 ~g~d~~ 266 (274)
T Consensus 263 ~~~~~~ 268 (275)
T COG0834 263 FGPDDY 268 (275)
T ss_pred CCCCCC
T ss_conf 685433