HHsearch alignment for GI: 254781112 and conserved domain: COG1464
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].
Probab=97.58 E-value=0.00016 Score=47.60 Aligned_cols=198 Identities=14% Similarity=0.128 Sum_probs=99.6
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEE-EHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCC-H-HCCCCHH--
Q ss_conf 9589996289987248704699848898852-16789976299855566-898898864310322110-0-0036756--
Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDGRGELTGFDID-LIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVL-V-NVAITPE-- 114 (274)
Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~d-l~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~-~-~~~~t~e-- 114 (274)
T Consensus 29 ~~I~vg~~~~--p~a--------~i----le~~~k~~~~k~Gi~l~i~~FtDY~~PN~AL~~gdiDaN~FQH~pyL~~~~ 94 (268)
T COG1464 29 KTIKVGATPG--PHA--------EI----LEVVVKPALKKKGLDLKIVEFTDYVQPNEALADGDIDANAFQHKPYLDQFN 94 (268)
T ss_pred CCEEEEECCC--CHH--------HH----HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCCHHHHCHHHHHHHH
T ss_conf 7179963689--659--------99----999987788855965999981487665578766884600121468899999
Q ss_pred HHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCH-HHH---HHHCCCC------------------
Q ss_conf 75420023--33222222222111222211111233-43202310101-223---3201345------------------
Q gi|254781112|r 115 RQKKYDFS--IPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTD-LSR---FAKELKS------------------ 169 (274)
Q Consensus 115 R~~~~~fs--~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~-~~~---~l~~~~~------------------ 169 (274)
T Consensus 95 k~~~~~Lv~vg~~~i~Pmg~YS----kk~ksl~el~~GatIaiPNDpsN~gRAL~lL~~aGLIkLk~~~~~~aT~~DI~e 170 (268)
T COG1464 95 KEHGGKLVAVGNTHIEPMGLYS----KKYKSLAELKDGATIAIPNDPTNEGRALLLLQKAGLIKLKDGVNLLATPKDITE 170 (268)
T ss_pred HHCCCCEEEEEEEEECCCEECC----HHCCCHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHH
T ss_conf 9739978987557761425012----200868467999989887898735679999998796797688765588878861
Q ss_pred ---CCEEE-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCC--CCCCCCEEEEEECCCH--HHHHHHH
Q ss_conf ---42133-68557777554432100366558999999845876673262367--7687707999818998--9999999
Q gi|254781112|r 170 ---HLVFS-HNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADR--MKDNSAVAFMMRKGNN--KLTRSIN 241 (274)
Q Consensus 170 ---~~~~~-~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~--~L~~~in 241 (274)
T Consensus 171 NPK~lki~EldAaqlpRaLdd--vD~AvIN~n----yA~~AgL~p~kdai~~e~~~~spY~Niivvr~~d~d~~~ik~-- 242 (268)
T COG1464 171 NPKNLKIKELEAAQLPRALDD--VDAAVINTN----YALQAGLNPKKDALFEEDKDSSPYVNIIVVREEDKDDPAVKK-- 242 (268)
T ss_pred CCCCCEEEECCHHHCCCCCCC--CCEEEECCH----HHHHCCCCCCCCCEECCCCCCCCCEEEEEECCCCCCCHHHHH--
T ss_conf 944575687056756532035--677987430----797759991204214146667862479997155668889999--
Q ss_pred HHHHHHHHCCHH-HHHHHHHCCCCCC
Q ss_conf 999999979859-9999876788877
Q gi|254781112|r 242 EILCAIHLDGTY-KKIFDRYFDKNII 266 (274)
Q Consensus 242 ~~l~~l~~~G~~-~~I~~kw~g~d~~ 266 (274)
T Consensus 243 --lv~a~qs~evk~~i~k~y~G~~vP 266 (268)
T COG1464 243 --LVEAYQSDEVKAFIEKKYKGAVVP 266 (268)
T ss_pred --HHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf --999974999999999972887566