HHsearch alignment for GI: 254781112 and conserved domain: COG1732
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane].
Probab=97.56 E-value=4.8e-05 Score=50.91 Aligned_cols=203 Identities=16% Similarity=0.114 Sum_probs=108.3
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHH--HHHHHHHCCCCCCC---HH---
Q ss_conf 88589589996289987248704699848898852167899762998555668988--98864310322110---00---
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVS--GLITGLDTNRYDVL---VN--- 108 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~--~~~~~l~~g~~D~~---~~--- 108 (274)
T Consensus 29 ~~~~~~I~VgsK~----~t--E----~---~IL~~m~~~lle~~~~kv~~~~~lG~t~v~~~Al~~G~IDiYpEYTGt~~ 95 (300)
T COG1732 29 ASAAKTIVVGSKI----FT--E----Q---YILGNILKQLLEKNGIKVEDKTGLGGTAVVRNALKSGDIDIYPEYTGTAL 95 (300)
T ss_pred CCCCCCEEEECCC----CC--H----H---HHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 2357887983477----83--8----8---99999999999865991454168885299999997598776854323145
Q ss_pred --CCC-------CHHH---------HH--HHCCCCCC-CCCCCCCCCCCCC---CCCCCCCCCCC----CCEEEECCCH-
Q ss_conf --036-------7567---------54--20023332-2222222211122---22111112334----3202310101-
Q gi|254781112|r 109 --VAI-------TPER---------QK--KYDFSIPY-IAHRVLLVVRSDQ---QDIRSFKDLTD----KTVAQILGTD- 159 (274)
Q Consensus 109 --~~~-------t~eR---------~~--~~~fs~p~-~~~~~~~~~~~~~---~~~~~~~dL~g----~~V~~~~g~~- 159 (274)
T Consensus 96 ~~~lk~~~~~~~dp~~~y~~vK~~~~k~~~l~wl~p~~~nNTyA~av~~~~A~~~~i~TiSDLak~~~~l~~g~~~eF~~ 175 (300)
T COG1732 96 FSFLKKDPPASKDPKKVYETVKKLDAKQFKLVWLKPAGFNNTYALAVRKDVAEKYNLETISDLAKHSNQLKLGADSEFAE 175 (300)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHHHCEECCCHHHHC
T ss_conf 66345676454798999999999888607978965468776058996198898819816999998665346227842313
Q ss_pred ----HHHHHHCCCCCC---EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC--CCCEEECCCCCCCCCEEEEEE
Q ss_conf ----223320134542---13368557777554432100366558999999845876--673262367768770799981
Q gi|254781112|r 160 ----LSRFAKELKSHL---VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHD--GNLFKIADRMKDNSAVAFMMR 230 (274)
Q Consensus 160 ----~~~~l~~~~~~~---~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 230 (274)
T Consensus 176 R~DG~~~l~k~Yg~~~~~~~~~m~~gl~y~Al~~g~~d~~~~YsTDg--~I~~~~L~VLkDD-K~~fP~Y~~---apvvr 249 (300)
T COG1732 176 RADGLPALQKAYGFDFKPDLRTMDGGLTYQALKNGTVDAADAYSTDG--RIAAYGLKVLKDD-KGFFPPYQA---APVVR 249 (300)
T ss_pred CCCCCHHHHHHHCCCCCCCCEECCCHHHHHHHHCCCCCEEEECCCCC--CCCCCCCEEEECC-CCCCCCCCC---CCEEC
T ss_conf 65122899998487668874433815899998749977676314552--2122685797068-767998765---64021
Q ss_pred ----CCCHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf ----89989999999999999979859999987
Q gi|254781112|r 231 ----KGNNKLTRSINEILCAIHLDGTYKKIFDR 259 (274)
Q Consensus 231 ----k~~~~L~~~in~~l~~l~~~G~~~~I~~k 259 (274)
T Consensus 250 e~vlk~~Pel~~~l~~l~~kid~~-tMq~LNy~ 281 (300)
T COG1732 250 EEVLKKHPELKTILNKLSGKIDTE-TMQALNYR 281 (300)
T ss_pred HHHHHHCHHHHHHHHHHHCCCCHH-HHHHHHHH
T ss_conf 877767988999998875458999-99998777