HHsearch alignment for GI: 254781112 and conserved domain: COG2358
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only].
Probab=97.91 E-value=1.1e-05 Score=54.91 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=79.5
Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHH-HCCCCCCCCCCCH-HHHHHHHHCCCCCCCHHCC-----
Q ss_conf 85895899962899872487046998488988521678997-6299855566898-8988643103221100003-----
Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAH-RLNLKVEFFETAV-SGLITGLDTNRYDVLVNVA----- 110 (274)
Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~-~lg~~~~~~~~~~-~~~~~~l~~g~~D~~~~~~----- 110 (274)
T Consensus 23 ~~~~~itigTG~~~G~Y--Y---------~ig~~ia~~~~~~~~~i~~~v~~tggSv~Nl~~i~~Ge~d~alvq~d~a~~ 91 (321)
T COG2358 23 AEPKFITIGTGSTGGVY--Y---------PIGGGLAQLLNKDEKGIECSVVPTGGSVENLKLLASGEADLALVQSDVAYE 91 (321)
T ss_pred CCCEEEEEEECCCCCEE--E---------EHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 67637999606998622--3---------037899999851477818999606542999986753762535666789999
Q ss_pred ------CCHH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-ECCCH----HHHHHHCCCCCCEE----
Q ss_conf ------6756--7542002333222222222111222211111233432023-10101----22332013454213----
Q gi|254781112|r 111 ------ITPE--RQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQ-ILGTD----LSRFAKELKSHLVF---- 173 (274)
Q Consensus 111 ------~t~e--R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~-~~g~~----~~~~l~~~~~~~~~---- 173 (274)
T Consensus 92 ay~G~g~f~~~~~~~~lr~v~~lype~~~vv~r~d~~-Ikti~DL~GKrV~iG~~gSgt~~~a~~il~a~Gi~~~~~~~~ 170 (321)
T COG2358 92 AYNGTGSFEGKGKDENLRAVAALYPEPFHVVTRKDAG-IKTIADLKGKRVAIGPPGSGTEATARQILEALGITYDDYELD 170 (321)
T ss_pred HHHCCCCCCCCCCCCCHHHHEECCCCEEEEEEECCCC-CCEEHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHH
T ss_conf 8718531145665514332213054208999966889-656010389888626999740889999999739997624566
Q ss_pred -ECCHHHHHHHHHHHHHHCCCC
Q ss_conf -368557777554432100366
Q gi|254781112|r 174 -SHNFEQSLQLLLSKRTDATMI 194 (274)
Q Consensus 174 -~~~~~~~~~~l~~grvD~~~~ 194 (274)
T Consensus 171 ~~~~~a~~~~~l~~g~iDA~~~ 192 (321)
T COG2358 171 LGLGDAESADALKNGTIDAAFY 192 (321)
T ss_pred HHCCCHHHHHHHHCCCCCEEEE
T ss_conf 6337306578763796328998