HHsearch alignment for GI: 254781112 and conserved domain: COG3181
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=95.99 E-value=0.039 Score=32.88 Aligned_cols=133 Identities=17% Similarity=0.140 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-------CCCEEEECC--CHH----HHHHHCCC--CCCEEECCHHHHHHHHHHHHH
Q ss_conf 222222222111222211111233-------432023101--012----23320134--542133685577775544321
Q gi|254781112|r 125 YIAHRVLLVVRSDQQDIRSFKDLT-------DKTVAQILG--TDL----SRFAKELK--SHLVFSHNFEQSLQLLLSKRT 189 (274)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~dL~-------g~~V~~~~g--~~~----~~~l~~~~--~~~~~~~~~~~~~~~l~~grv 189 (274)
T Consensus 119 v~~~p~~l~v~~~s~-~~t~~dlv~~~k~~p~~v~~~~~g~Gs~dhl~~~~~~k~~Gi~~~~Vpy~g~gea~taLlgg~v 197 (319)
T COG3181 119 LVSDPGVLVVRADSP-YKTLKDLVAYAKADPGSVIGGGSGLGSADHLAGALFAKAAGIKITYVPYKGGGEALTALLGGHV 197 (319)
T ss_pred EECCCCEEEEECCCC-CCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCE
T ss_conf 113661599817887-3669999999985998089547888958899999999973896257741686487899860866
Q ss_pred HCCCCCHHHHHHHHHHCCCCCCC-------------EE----ECCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCC
Q ss_conf 00366558999999845876673-------------26----236776877079998189-9899999999999999798
Q gi|254781112|r 190 DATMIPDIPFFNFLERRPHDGNL-------------FK----IADRMKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDG 251 (274)
Q Consensus 190 D~~~~~~~~~~~~~~~~~~~~~~-------------~~----~~~~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G 251 (274)
T Consensus 198 ~a~~~~~se~~~~vksG-~lr~Lav~s~eRl~~~pdvPT~~E~G~~~~~~~wrgvfap~g~~~e~~~~~~~a~kk~l~s~ 276 (319)
T COG3181 198 DAGSTNLSELLSQVKSG-TLRLLAVFSEERLPGLPDVPTLKEQGYDVVMSIWRGVFAPAGTPDEIIAKLSAALKKALASP 276 (319)
T ss_pred EEEECCHHHHHHHHCCC-CEEEEEEECHHHCCCCCCCCCHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCH
T ss_conf 54436712435563057-46787753431067799999867638754664435898079999999999999999986398
Q ss_pred HHHHHHHH
Q ss_conf 59999987
Q gi|254781112|r 252 TYKKIFDR 259 (274)
Q Consensus 252 ~~~~I~~k 259 (274)
T Consensus 277 e~~~~~~~ 284 (319)
T COG3181 277 EWQKRLKE 284 (319)
T ss_pred HHHHHHHH
T ss_conf 89999985