HHsearch alignment for GI: 254781112 and conserved domain: COG4588
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only].
Probab=97.55 E-value=0.00045 Score=44.86 Aligned_cols=180 Identities=17% Similarity=0.217 Sum_probs=116.0
Q ss_pred EEEEEHHHHHHHCCCCCCCCC--C-CHHHHHHHHHCCCCCCCHHCCCCHHH---HH-HHCCC----CCCCCCCCCCCCCC
Q ss_conf 885216789976299855566--8-98898864310322110000367567---54-20023----33222222222111
Q gi|254781112|r 68 FDIDLIKEVAHRLNLKVEFFE--T-AVSGLITGLDTNRYDVLVNVAITPER---QK-KYDFS----IPYIAHRVLLVVRS 136 (274)
Q Consensus 68 ~~~dl~~~i~~~lg~~~~~~~--~-~~~~~~~~l~~g~~D~~~~~~~t~eR---~~-~~~fs----~p~~~~~~~~~~~~ 136 (274)
T Consensus 34 aL~~vA~~~~ektg~kVnvt~GPq~tW~~kA----kknADilfgaseqsalaia~~~~~~fs~~~i~ply~R~aiIlvkk 109 (252)
T COG4588 34 ALKDVAKKYEEKTGIKVNVTAGPQATWNEKA----KKNADILFGASEQSALAIAEDHKDSFSEKNIQPLYLRPAIILVKK 109 (252)
T ss_pred HHHHHHHHHHHHHCEEEEEECCCCCHHHHHH----HCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEECEEEEECC
T ss_conf 8999999987874807999418861044564----136745641648889999985633355202531354021799627
Q ss_pred CCC-CCCCCCCCC--CCCEEEECC--------C-HHHHHHHC---------CCCCCEEE-CCHHHHHHHHHH-HHHHCCC
Q ss_conf 222-211111233--432023101--------0-12233201---------34542133-685577775544-3210036
Q gi|254781112|r 137 DQQ-DIRSFKDLT--DKTVAQILG--------T-DLSRFAKE---------LKSHLVFS-HNFEQSLQLLLS-KRTDATM 193 (274)
Q Consensus 137 ~~~-~~~~~~dL~--g~~V~~~~g--------~-~~~~~l~~---------~~~~~~~~-~~~~~~~~~l~~-grvD~~~ 193 (274)
T Consensus 110 gNPknIk~~eDll~~gi~ivV~dGaG~sntsgtgvwED~agr~~~ie~v~afR~NI~~fapnSgaArkaf~~~~~aDawI 189 (252)
T COG4588 110 GNPKNIKGFEDLLKPGIGIVVNDGAGVSNTSGTGVWEDIAGRKGNIETVAAFRKNIVAFAPNSGAARKAFENQPDADAWI 189 (252)
T ss_pred CCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCEEHHHHHCCCCCHHHHHHHHHCEEEECCCCCHHHHHHHCCCCCCEEE
T ss_conf 99544456888705786299837976447777220486541011488999988523897468704899985499985588
Q ss_pred CCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 655899999984587667326236776877079998189-9899999999999999798599999876
Q gi|254781112|r 194 IPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274)
T Consensus 190 tW~----dWa~snpdig~~v~~~~d~vIyRd~nv~~~~~a~~ea~~F~dy-----l~S~EAq~ifkky 248 (252)
T COG4588 190 TWA----DWAKSNPDIGDAVEIEKDYVIYRDFNVALAKDANKEARDFADY-----LQSDEAQKIFKKY 248 (252)
T ss_pred EEC----CHHHHCCCHHCEEECCCCEEEEEECCEEECCCCCHHHHHHHHH-----HHHHHHHHHHHHH
T ss_conf 701----3233098501004516661775402034368999789999999-----7217789999860