HHsearch alignment for GI: 254781112 and conserved domain: COG4623
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane].
Probab=99.90 E-value=3.2e-23 Score=163.28 Aligned_cols=222 Identities=22% Similarity=0.315 Sum_probs=187.3
Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCH-HHHHHHHHCCCCCCCH-HCCC
Q ss_conf 8878858958999628998724870469984889885216789976299855566898-8988643103221100-0036
Q gi|254781112|r 34 PFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAV-SGLITGLDTNRYDVLV-NVAI 111 (274)
Q Consensus 34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~-~~~~~~l~~g~~D~~~-~~~~ 111 (274)
T Consensus 16 l~~Iq~rGvLrV~tins--p~sy~~~--~~~p~G~eYelak~Fa~yLgV~Lki~~~~n~dqLf~aL~ng~~DL~Aagl~~ 91 (473)
T COG4623 16 LAAIQARGVLRVSTINS--PLSYFED--KGGPTGLEYELAKAFADYLGVKLKIIPADNIDQLFDALDNGNADLAAAGLLY 91 (473)
T ss_pred HHHHHHCCEEEEEEECC--CCCEECC--CCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCEECCCCCC
T ss_conf 89998668079984058--6500003--7986535599999999985976899866778889999857993324265667
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCC-----C---CCEEECCHHHHHHH
Q ss_conf 756754200233322222222211122221111123343202310101223320134-----5---42133685577775
Q gi|254781112|r 112 TPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELK-----S---HLVFSHNFEQSLQL 183 (274)
Q Consensus 112 t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~-----~---~~~~~~~~~~~~~~ 183 (274)
T Consensus 92 ~~~~l~~~~~gP~y~svs~qlVyRkG~~Rp~~l~~L~g~~i~v~~gs~~~~~l~~lk~~kyP~l~~k~d~~~~~~dLle~ 171 (473)
T COG4623 92 NSERLKNFQPGPTYYSVSQQLVYRKGQYRPRSLGQLKGRQITVAKGSAHVEDLKLLKETKYPELIWKVDDKLGVEDLLEM 171 (473)
T ss_pred CHHHHCCCCCCCCEECCCHHHHHHCCCCCCCCHHHCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHH
T ss_conf 96674046788720022588876528878788887367556406996888999999873163443020221269999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 5443210036655899999984587667326236776877079998189-989999999999999979859999987678
Q gi|254781112|r 184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKKIFDRYFD 262 (274)
Q Consensus 184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~I~~kw~g 262 (274)
T Consensus 172 v~~Gkldytiads~~is~~q~i~P~la----Vafd~tde~~v~Wy~~~~dd~tL~a~ll~F~~~~~e~g~larleeky~g 247 (473)
T COG4623 172 VAEGKLDYTIADSVEISLFQRVHPELA----VAFDLTDEQPVAWYLPRDDDSTLSAALLDFLNEAKEDGLLARLEEKYLG 247 (473)
T ss_pred HHCCCCCEEEECCHHHHHHHHHCCCCE----EEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf 964776615516188898988572221----3220135667346605896688999999999873052078999999724
Q ss_pred C
Q ss_conf 8
Q gi|254781112|r 263 K 263 (274)
Q Consensus 263 ~ 263 (274)
T Consensus 248 H 248 (473)
T COG4623 248 H 248 (473)
T ss_pred C
T ss_conf 4