HHsearch alignment for GI: 254781112 and conserved domain: PRK09501
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed.
Probab=97.65 E-value=0.0006 Score=44.09 Aligned_cols=210 Identities=16% Similarity=0.148 Sum_probs=108.4
Q ss_pred HHHHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCC-HHHHHHHHHC---CCCC
Q ss_conf 98417887885895899962899872487046998488988521678997629985556689-8898864310---3221
Q gi|254781112|r 29 YFVIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETA-VSGLITGLDT---NRYD 104 (274)
Q Consensus 29 ~~~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~-~~~~~~~l~~---g~~D 104 (274)
T Consensus 15 ~l~~~~~~a~~~~~L~i~~---W~--~Yi-----------~~~~i~~Fe~etGikV~~~~~~s~ee~~akL~a~~~~~yD 78 (348)
T PRK09501 15 ALGMSAAHADDNNTLYFYN---WT--EYV-----------PPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYD 78 (348)
T ss_pred HHHCCHHHHCCCCEEEEEC---CC--CCC-----------CHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCE
T ss_conf 9735033543389799987---10--018-----------9789999999989889999549999999999717999828
Q ss_pred CCHHCCCCHHHH--------------------------H----HHCCCCCCCCCCCCCCCCCCC---CCCCCCCCC----
Q ss_conf 100003675675--------------------------4----200233322222222211122---221111123----
Q gi|254781112|r 105 VLVNVAITPERQ--------------------------K----KYDFSIPYIAHRVLLVVRSDQ---QDIRSFKDL---- 147 (274)
Q Consensus 105 ~~~~~~~t~eR~--------------------------~----~~~fs~p~~~~~~~~~~~~~~---~~~~~~~dL---- 147 (274)
T Consensus 79 vv~ps~~~v~~l~~~gll~~LD~s~ipN~~nl~p~~~~~~~dp~~~y~vPy~wGt~Gi~yn~d~v~~~~~~SW~dL~dp~ 158 (348)
T PRK09501 79 LVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPE 158 (348)
T ss_pred EEEECHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHCCHH
T ss_conf 99979689999997798454784228481226976744774899848988997511599850114788888789854966
Q ss_pred -CCCCEEEEC-------------C----CHHH-------HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf -343202310-------------1----0122-------33201345421336855777755443210036655899999
Q gi|254781112|r 148 -TDKTVAQIL-------------G----TDLS-------RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNF 202 (274)
Q Consensus 148 -~g~~V~~~~-------------g----~~~~-------~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~ 202 (274)
T Consensus 159 ~kGk-i~~~d~~~~~~~~al~~lG~~~n~~d~~~l~~a~~~L~~~~~~i~~~~s-d~~~~~l~~Gev~ia~~wsgda~~~ 236 (348)
T PRK09501 159 YKGS-LLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNS-DNPANPYMEGEVNLGMIWNGSAFVA 236 (348)
T ss_pred HCCE-EEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEC-CCHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 4790-7971667899999999827998889999999999999985110589817-7054698738832998740589999
Q ss_pred HHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHH-HHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 984587667326236776877079998189--989999-9999999999798599999876788
Q gi|254781112|r 203 LERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTR-SINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~-~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
T Consensus 237 ~-~~~-~~i~~v~PkEG~~~w~D~~~Ipk~A~n~e~A~~FInf~l-----~Pevaa~~a~~~~y 293 (348)
T PRK09501 237 R-QAG-TPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLL-----RPDVAKQVAETIGY 293 (348)
T ss_pred H-HCC-CCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHH-----CHHHHHHHHHHHCC
T ss_conf 9-708-997189757886699899889899989899999999861-----97999999997488