HHsearch alignment for GI: 254781112 and conserved domain: PRK09501

>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed.
Probab=97.65  E-value=0.0006  Score=44.09  Aligned_cols=210  Identities=16%  Similarity=0.148  Sum_probs=108.4

Q ss_pred             HHHHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCC-HHHHHHHHHC---CCCC
Q ss_conf             98417887885895899962899872487046998488988521678997629985556689-8898864310---3221
Q gi|254781112|r   29 YFVIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETA-VSGLITGLDT---NRYD  104 (274)
Q Consensus        29 ~~~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~-~~~~~~~l~~---g~~D  104 (274)
T Consensus        15 ~l~~~~~~a~~~~~L~i~~---W~--~Yi-----------~~~~i~~Fe~etGikV~~~~~~s~ee~~akL~a~~~~~yD   78 (348)
T PRK09501         15 ALGMSAAHADDNNTLYFYN---WT--EYV-----------PPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYD   78 (348)
T ss_pred             HHHCCHHHHCCCCEEEEEC---CC--CCC-----------CHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCE
T ss_conf             9735033543389799987---10--018-----------9789999999989889999549999999999717999828


Q ss_pred             CCHHCCCCHHHH--------------------------H----HHCCCCCCCCCCCCCCCCCCC---CCCCCCCCC----
Q ss_conf             100003675675--------------------------4----200233322222222211122---221111123----
Q gi|254781112|r  105 VLVNVAITPERQ--------------------------K----KYDFSIPYIAHRVLLVVRSDQ---QDIRSFKDL----  147 (274)
Q Consensus       105 ~~~~~~~t~eR~--------------------------~----~~~fs~p~~~~~~~~~~~~~~---~~~~~~~dL----  147 (274)
T Consensus        79 vv~ps~~~v~~l~~~gll~~LD~s~ipN~~nl~p~~~~~~~dp~~~y~vPy~wGt~Gi~yn~d~v~~~~~~SW~dL~dp~  158 (348)
T PRK09501         79 LVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPE  158 (348)
T ss_pred             EEEECHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHCCHH
T ss_conf             99979689999997798454784228481226976744774899848988997511599850114788888789854966


Q ss_pred             -CCCCEEEEC-------------C----CHHH-------HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             -343202310-------------1----0122-------33201345421336855777755443210036655899999
Q gi|254781112|r  148 -TDKTVAQIL-------------G----TDLS-------RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNF  202 (274)
Q Consensus       148 -~g~~V~~~~-------------g----~~~~-------~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~  202 (274)
T Consensus       159 ~kGk-i~~~d~~~~~~~~al~~lG~~~n~~d~~~l~~a~~~L~~~~~~i~~~~s-d~~~~~l~~Gev~ia~~wsgda~~~  236 (348)
T PRK09501        159 YKGS-LLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNS-DNPANPYMEGEVNLGMIWNGSAFVA  236 (348)
T ss_pred             HCCE-EEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEC-CCHHHHHHCCCCEEEEEECHHHHHH
T ss_conf             4790-7971667899999999827998889999999999999985110589817-7054698738832998740589999


Q ss_pred             HHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHH-HHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf             984587667326236776877079998189--989999-9999999999798599999876788
Q gi|254781112|r  203 LERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTR-SINEILCAIHLDGTYKKIFDRYFDK  263 (274)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~-~in~~l~~l~~~G~~~~I~~kw~g~  263 (274)
T Consensus       237 ~-~~~-~~i~~v~PkEG~~~w~D~~~Ipk~A~n~e~A~~FInf~l-----~Pevaa~~a~~~~y  293 (348)
T PRK09501        237 R-QAG-TPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLL-----RPDVAKQVAETIGY  293 (348)
T ss_pred             H-HCC-CCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHH-----CHHHHHHHHHHHCC
T ss_conf             9-708-997189757886699899889899989899999999861-----97999999997488