HHsearch alignment for GI: 254781112 and conserved domain: PRK09791
>PRK09791 putative DNA-binding transcriptional regulator; Provisional.
Probab=97.05 E-value=0.0073 Score=37.40 Aligned_cols=190 Identities=14% Similarity=0.198 Sum_probs=108.5
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
T Consensus 93 ~~G~l~Ig~~~~~~~-------------~~lp~~l~~f~~~~P~v~i~i~~~~~~~~~~~l~~g~~D~~i~~~~~~~~~~ 159 (302)
T PRK09791 93 LAGQINIGMGASISR-------------SLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDH 159 (302)
T ss_pred CCCEEEEEECHHHHH-------------HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 663399986268898-------------7119999999998879779999899999999998799778996567887887
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEEEEC--CCHH---HHHHHCCCC---CCEEECCHHHHHHHHHHH
Q ss_conf 20023332222222221112222--1111123343202310--1012---233201345---421336855777755443
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD--IRSFKDLTDKTVAQIL--GTDL---SRFAKELKS---HLVFSHNFEQSLQLLLSK 187 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~--~~~~~dL~g~~V~~~~--g~~~---~~~l~~~~~---~~~~~~~~~~~~~~l~~g 187 (274)
T Consensus 160 ~l~-~~~l~~~~~~~v~~~~hpl~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~lv~~g 238 (302)
T PRK09791 160 EFT-FEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVCETFSACISLVAKS 238 (302)
T ss_pred CEE-EEEEEEEEEEEEECCCCCCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHC
T ss_conf 647-9997740159998389843579899998479938757999799999999996799985699999299999999978
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 2100366558999999845876673262-367768770799981899899999999999999
Q gi|254781112|r 188 RTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGNNKLTRSINEILCAIH 248 (274)
Q Consensus 188 rvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~ 248 (274)
T Consensus 239 ~gv-~ilp~~~~~~~~~~~~----lv~lpl~~~~~~~~~~lv~r~~~~-~spa~~~fi~~lr 294 (302)
T PRK09791 239 DFL-SILPEEMGCDPLHGQG----LVMLPVSEILPKAAYYLIQRRDSR-QTPLTASLITQFR 294 (302)
T ss_pred CEE-EEECHHHHHHHHHCCC----EEEEECCCCCCCEEEEEEEECCCC-CCHHHHHHHHHHH
T ss_conf 967-9631999987874899----999979998860089999989098-8999999999999