HHsearch alignment for GI: 254781112 and conserved domain: PRK10682
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional.
Probab=95.38 E-value=0.22 Score=28.24 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=101.7
Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCC--CCCCHHCC
Q ss_conf 88788589589996289987248704699848898852167899762998555668-9889886431032--21100003
Q gi|254781112|r 34 PFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNR--YDVLVNVA 110 (274)
Q Consensus 34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~--~D~~~~~~ 110 (274)
T Consensus 23 ~~~aa~~~~Lnv~n---W~~--Yi-----------~p~~i~~FeketGikV~~~~~~snee~~akl~ag~~gyDvv~ps~ 86 (370)
T PRK10682 23 GTLAAEQKTLHIYN---WSD--YI-----------APDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSA 86 (370)
T ss_pred CHHHHCCCEEEEEC---CCC--CC-----------CHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECH
T ss_conf 05664279799981---676--57-----------977999999997988999954998999999966999998899777
Q ss_pred CCHHH-------------------------HH---H----HCCCCCCCCCCCCCCCCCCCC--------CCCCCCCC---
Q ss_conf 67567-------------------------54---2----002333222222222111222--------21111123---
Q gi|254781112|r 111 ITPER-------------------------QK---K----YDFSIPYIAHRVLLVVRSDQQ--------DIRSFKDL--- 147 (274)
Q Consensus 111 ~t~eR-------------------------~~---~----~~fs~p~~~~~~~~~~~~~~~--------~~~~~~dL--- 147 (274)
T Consensus 87 ~~v~~~~~~gll~pLD~sklpN~~ni~p~~~~~~~~~dpg~~YsVPy~wGt~GI~Yn~d~v~~~~g~~~p~~sW~~l~~P 166 (370)
T PRK10682 87 SFLERQLTAGVFQPLDKSKLPNWKNLDPELLKLVAKHDPDNKYAMPYMWATTGIGYNVDKVKAVLGEDAPVDSWDLVLKP 166 (370)
T ss_pred HHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHHHHHCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHCH
T ss_conf 99999997698464770008674442999884100369997599888842259999765442234678884629986492
Q ss_pred ------CCCCEEEEC-------------CCH-----HHH-------HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH
Q ss_conf ------343202310-------------101-----223-------3201345421336855777755443210036655
Q gi|254781112|r 148 ------TDKTVAQIL-------------GTD-----LSR-------FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274)
Q Consensus 148 ------~g~~V~~~~-------------g~~-----~~~-------~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274)
T Consensus 167 ~~~~k~k~~~v~~ld~~~~~~~~aL~~lG~~~n~~~~~d~~~aa~~~L~~~kp~v~~~~s-~~~~~~l~~Gei~~a~~ws 245 (370)
T PRK10682 167 ENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHS-SQYINDLANGDICVAIGWA 245 (370)
T ss_pred HHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHCCEECC-CHHHHHHHCCCEEEEEEEC
T ss_conf 756530358558976888999999997699989999999999999999971222441037-2889998548679999740
Q ss_pred HHHHHHH---HHCCCCCCCEEE-CCCCCCCCCEEEEEECC--CHHHHHH-HHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 8999999---845876673262-36776877079998189--9899999-999999999798599999876788
Q gi|254781112|r 197 IPFFNFL---ERRPHDGNLFKI-ADRMKDNSAVAFMMRKG--NNKLTRS-INEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 197 ~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~--~~~L~~~-in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
T Consensus 246 Gd~~~~~~~~~~~~~~~~i~yv~PkEG~~~w~D~~~Ipk~A~n~~~A~~FInf~l-----~Pe~aa~~~~~~~y 314 (370)
T PRK10682 246 GDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLL-----RPDVIAHISDHVFY 314 (370)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHC-----CHHHHHHHHHHHCC
T ss_conf 8999999999863578706998158874588878888689999699999999850-----97999999986478