HHsearch alignment for GI: 254781112 and conserved domain: PRK11062
>PRK11062 nhaR transcriptional activator NhaR; Provisional.
Probab=95.61 E-value=0.13 Score=29.63 Aligned_cols=188 Identities=11% Similarity=0.065 Sum_probs=101.6
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCCHHHHHHHHHCCCCCCCHH-CCCCHHHHH
Q ss_conf 8958999628998724870469984889885216789976-29985556689889886431032211000-036756754
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETAVSGLITGLDTNRYDVLVN-VAITPERQK 117 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~~~~~~~~l~~g~~D~~~~-~~~t~eR~~ 117 (274)
T Consensus 92 ~~~lrvGi~~tl~k~-~------------~~~lL~~~~~~~~~v~l~~~eg~~~~LL~~L~~~~LDlvLsd~p~~~~-~~ 157 (296)
T PRK11062 92 NLLFDVGVADALSKR-L------------VSRVLLAAVPEDESIHLRCFESTHEMLLEQLSQHKLDMILSDCPVDST-QQ 157 (296)
T ss_pred CCEEEEEEHHHHHHH-H------------HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCC-CC
T ss_conf 705999852464698-9------------999999997228977999934987999999983898757606888755-68
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC-CCH----HHHHHHCCCCC--C-EEECCHHHHHHHHHHHHH
Q ss_conf 200233322222222211122221111123343202310-101----22332013454--2-133685577775544321
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQIL-GTD----LSRFAKELKSH--L-VFSHNFEQSLQLLLSKRT 189 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~-g~~----~~~~l~~~~~~--~-~~~~~~~~~~~~l~~grv 189 (274)
T Consensus 158 ~~~~s~~L~~~~v~~~~~~~l~~~~fP~~L~~~plllp~~~S~lR~~ld~wf~~~gI~P~Iv~E~d-D~allk~~a~~G~ 236 (296)
T PRK11062 158 EGLFSKKLGECGVSFFCTNPLPEKPFPACLEERRLLIPGRRTMLGRKLLNWFNSQGLNVEILGEFD-DAALMKAFGAYHD 236 (296)
T ss_pred CCEEEEECCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHHCC
T ss_conf 863898746684689845744458795775579840279987589999999996899844999859-8999999998199
Q ss_pred HCCCCCHHHHHHHHHHCCCCCCCEEECCCC-CCCCCEEEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 003665589999998458766732623677-687707999818--998999999999999
Q gi|254781112|r 190 DATMIPDIPFFNFLERRPHDGNLFKIADRM-KDNSAVAFMMRK--GNNKLTRSINEILCA 246 (274)
Q Consensus 190 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k--~~~~L~~~in~~l~~ 246 (274)
T Consensus 237 Gva~~P~~v~~d~~~~~~l----~~~g~~~~v~e~fyAIt~~R~~~hP~v~~i~~~~~~~ 292 (296)
T PRK11062 237 AIFVAPSIYAQDIYADHSV----VEIGRVENVKEEYHVIFAERMIQHPAVQRICNTDFSA 292 (296)
T ss_pred CEEECCHHHHHHHHHCCCC----EEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 8898789999999857991----8944578842679998504468986999999999987