HHsearch alignment for GI: 254781112 and conserved domain: PRK11205
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional.
Probab=93.89 E-value=0.51 Score=26.00 Aligned_cols=206 Identities=13% Similarity=0.115 Sum_probs=92.4
Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHH----HCCCCCCCHHCCC-
Q ss_conf 8589589996289987248704699848898852167899762998555668-988988643----1032211000036-
Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGL----DTNRYDVLVNVAI- 111 (274)
Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l----~~g~~D~~~~~~~- 111 (274)
T Consensus 16 ~~~~~l~vyt~dsf~------~d-~----g~~~~l~~~Fek~tGikV~~v~~~dg~~ll~Rl~~Eg~np~ADVv~gvD~~ 84 (326)
T PRK11205 16 FAKPVLTVYTYDSFA------AD-W----GPGPAVKKAFEAECGCELKFVALEDGVSLLNRLRLEGKNSKADVVLGLDNN 84 (326)
T ss_pred CCCCEEEEEECCCCC------CC-C----CCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEECCHH
T ss_conf 029879999665444------46-6----864799999989879689999679679999999973899976589981767
Q ss_pred CHHHHHHHC-----------------CCCC----CCCCCCCCCCCCCC--CCCCCCCCCCC----CCEEEEC--CCH--H
Q ss_conf 756754200-----------------2333----22222222211122--22111112334----3202310--101--2
Q gi|254781112|r 112 TPERQKKYD-----------------FSIP----YIAHRVLLVVRSDQ--QDIRSFKDLTD----KTVAQIL--GTD--L 160 (274)
Q Consensus 112 t~eR~~~~~-----------------fs~p----~~~~~~~~~~~~~~--~~~~~~~dL~g----~~V~~~~--g~~--~ 160 (274)
T Consensus 85 ~l~~A~~~gl~~p~~s~~~~~~ip~~~~d~~~vp~d~g~~a~vYn~~~~~~~P~S~~DL~~p~~kgki~i~dP~tSs~g~ 164 (326)
T PRK11205 85 LLAAAKKTGLFAPSGVDTSAVTVPGGWNDDTFVPYDYGYFAFVYDKEKLKNPPKSLKELVESDQNWKVIYQDPRTSTPGL 164 (326)
T ss_pred HHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEECCCCCEEEEEEEHHHCCCCCCCHHHHHCCHHCCCEEECCCCCCCCHH
T ss_conf 89999986996525686110248600269852113476589998422237887698987273303886633888785279
Q ss_pred H--------------HHHHCCCCCCE-EECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCE
Q ss_conf 2--------------33201345421-33685577775544321003665589999998458766732623677687707
Q gi|254781112|r 161 S--------------RFAKELKSHLV-FSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAV 225 (274)
Q Consensus 161 ~--------------~~l~~~~~~~~-~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (274)
T Consensus 165 a~l~~~i~~~Ge~~~e~W~~L~~N~~~~~~gws~a~~~~~~Ge~~ivlsy~~spa~~~~~~~~~~~~~~~~~eG~~~~ie 244 (326)
T PRK11205 165 GLLLWMKKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGEADLVLSYTTSPAYHIIAEKKDNYAAANFSEGHYLQVE 244 (326)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCEEECCCCCEEEEE
T ss_conf 99999999716328999999986384447883388887644767579985147787764136665422445887277766
Q ss_pred EEEEECC--CHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 9998189--98999999999999997985999998
Q gi|254781112|r 226 AFMMRKG--NNKLTRSINEILCAIHLDGTYKKIFD 258 (274)
Q Consensus 226 ~~~~~k~--~~~L~~~in~~l~~l~~~G~~~~I~~ 258 (274)
T Consensus 245 gagI~k~akn~e~A~kFidfll----S~eaQ~~~~ 275 (326)
T PRK11205 245 VAARTAASKQPELAQKFLQFMV----SPAFQNAIP 275 (326)
T ss_pred EEEEECCCCCHHHHHHHHHHHC----CHHHHHHHH
T ss_conf 7898379999899999999975----899999864