HHsearch alignment for GI: 254781112 and conserved domain: PRK11260
>PRK11260 cystine transporter subunit; Provisional.
Probab=100.00 E-value=0 Score=340.42 Aligned_cols=257 Identities=25% Similarity=0.448 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCC
Q ss_conf 99999999999999999999999998--4178878858958999628998724870469984889885216789976299
Q gi|254781112|r 5 LRDLRKIFFSKYLFFAPFFILFSYYF--VIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNL 82 (274)
Q Consensus 5 ~~~mk~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~ 82 (274)
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~L~~I~~~G~L~Vg~~~~~pPf~~~--d~~G~~~GfdvDl~~~ia~~lg~ 78 (264)
T PRK11260 1 LAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLLVGLEGTYPPFSFQ--GEDGKLTGFEVEFAEALAKHLGV 78 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEE--CCCCCEEEEEHHHHHHHHHHHCC
T ss_conf 9046799999999999999835765434243999986998999977898893689--99999888719999999998499
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCHH
Q ss_conf 8555668988988643103221100-00367567542002333222222222111222-211111233432023101012
Q gi|254781112|r 83 KVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQ-DIRSFKDLTDKTVAQILGTDL 160 (274)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~-~~~~~~dL~g~~V~~~~g~~~ 160 (274)
T Consensus 79 ~~e~~~~~~~~~i~~L~~g~~Di~~~~~t~T~eR~~~~~Fs~PY~~~~~~~~v~~~~~~~i~~~~dL~Gk~V~v~~gs~~ 158 (264)
T PRK11260 79 KASLKPTKWDGMLASLDSKRIDVVINQVTISDERKKKYDFSTPYTVSGIQALVKKGNEGTIKTAADLKGKKVGVGLGTNY 158 (264)
T ss_pred CEEEEECCHHHHHHHHHCCCCCEEECCCCCCHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCHHHHCCCEEEEECCCHH
T ss_conf 56999788899999986699466725753588888517767743774459999878976668978966871688569789
Q ss_pred HHHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 2332013--45421336855777755443210036655899999984587667326236776877079998189989999
Q gi|254781112|r 161 SRFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTR 238 (274)
Q Consensus 161 ~~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~ 238 (274)
T Consensus 159 ~~~l~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~iav~k~~~~L~~ 235 (264)
T PRK11260 159 EEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDT---LAVTGEAFSRQESGVALRKGNPDLLK 235 (264)
T ss_pred HHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCC---EEECCCCCCCCEEEEEEECCCHHHHH
T ss_conf 999986088981686366189999987598679994599999999868997---89806876665089999899999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf 9999999999798599999876788877
Q gi|254781112|r 239 SINEILCAIHLDGTYKKIFDRYFDKNII 266 (274)
Q Consensus 239 ~in~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274)
T Consensus 236 ~in~~L~~l~~dG~~~~i~~KwfG~D~t 263 (264)
T PRK11260 236 AVNNAIAEMQKDGTLKALSEKWFGADVT 263 (264)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHCCCCCC
T ss_conf 9999999999677799999765799899