HHsearch alignment for GI: 254781112 and conserved domain: PRK11553
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional.
Probab=99.17 E-value=9.2e-10 Score=80.06 Aligned_cols=211 Identities=13% Similarity=0.134 Sum_probs=115.9
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCC-HHHHHHHHHCCCCCCCHHCCCCH-
Q ss_conf 8858958999628998724870469984889885216789976-29985556689-88988643103221100003675-
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETA-VSGLITGLDTNRYDVLVNVAITP- 113 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~-~~~~~~~l~~g~~D~~~~~~~t~- 113 (274)
T Consensus 23 ~~~~~~lrIgyq~~~~~~~~~-~-~~----~----~~---ek~~~~~kV~w~~F~~G~~~~eAl~aG~iD~~~-~g~~p~ 88 (314)
T PRK11553 23 ESSPEALRIGYQKGSIGLVLA-K-SH----Q----LL---EKRFPQTKISWVEFPAGPQMLEALNVGSIDLGS-TGDIPP 88 (314)
T ss_pred HCCCCEEEEEECCCCHHHHHH-H-HC----C----HH---HHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEE-ECCHHH
T ss_conf 348975999961774158999-8-52----8----67---661789835899789748999999769975451-158589
Q ss_pred --HHHHHH--CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHH----HHCCCCC---CEE-ECCHHH
Q ss_conf --675420--02--333222222222111222211111233432023101012233----2013454---213-368557
Q gi|254781112|r 114 --ERQKKY--DF--SIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRF----AKELKSH---LVF-SHNFEQ 179 (274)
Q Consensus 114 --eR~~~~--~f--s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~----l~~~~~~---~~~-~~~~~~ 179 (274)
T Consensus 89 i~a~a~G~~~~~va~~~~~~~~~~i~V~~~S-~I~s~aDLkGKkVa~~~Gs~~~~~l~~aL~~aGL~~~DV~~v~l~p~d 167 (314)
T PRK11553 89 IFAQAAGADLVYVGVEPPKPKAEVILVAENS-PIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPAD 167 (314)
T ss_pred HHHHHCCCCEEEEEEECCCCCCEEEEEECCC-CCCCHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCHHHEEEEECCCHH
T ss_conf 9998669986999986378864189984898-778888938998974179737999999999869988991898459388
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEE---CCCHHHHHHHHHHHHHH----HHC-C
Q ss_conf 777554432100366558999999845876673262367768770799981---89989999999999999----979-8
Q gi|254781112|r 180 SLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMR---KGNNKLTRSINEILCAI----HLD-G 251 (274)
Q Consensus 180 ~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~~L~~~in~~l~~l----~~~-G 251 (274)
T Consensus 168 ~~aAl~~G~VDA~~~w~P~~~~a~~~-~ga-Rvl~dg~~~~~~~~~~~~~~~fa~~~p~~v~~~l~~l~~a~~w~~~~p~ 245 (314)
T PRK11553 168 ARAAFQQGNVDAWAIWDPYYSAALLQ-GGV-RVLKDGTDLNQTGSFYLAARPYAEKNGAFIQQVLATLSEADALTRSQRA 245 (314)
T ss_pred HHHHHHCCCCCEEEECCHHHHHHHHC-CCC-EEEECCCCCCCCCCEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 99999669978899756789999862-895-8985376667776168861898887999999999999999999997999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 5999998767888
Q gi|254781112|r 252 TYKKIFDRYFDKN 264 (274)
Q Consensus 252 ~~~~I~~kw~g~d 264 (274)
T Consensus 246 eaa~i~A~~~gl~ 258 (314)
T PRK11553 246 QSIALLAKTMGLP 258 (314)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999987929