HHsearch alignment for GI: 254781112 and conserved domain: TIGR02285
>TIGR02285 TIGR02285 conserved hypothetical protein; InterPro: IPR011972 Members of this family are found in several Proteobacteria, including Pseudomonas putida (strain KT2440), Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown..
Probab=99.36 E-value=1.2e-11 Score=91.70 Aligned_cols=222 Identities=21% Similarity=0.275 Sum_probs=148.5
Q ss_pred CCCEEEEECCCCCCEEEEEECCC------CCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCC-HHCCC
Q ss_conf 89589996289987248704699------848898852167899762-99855566898898864310322110-00036
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGR------GELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVL-VNVAI 111 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~------g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~-~~~~~ 111 (274)
T Consensus 18 ~e~I~W~~-~D~PPf~I~--~G~Gmmvdi~~grG~~D~~~~~i~r~lP~Y~H~~~~~~~aR~~~~~Q~~~~~~C~~~ll~ 94 (293)
T TIGR02285 18 KEAITWIV-SDLPPFFIF--DGPGMMVDIKKGRGVLDVVLKLIRRKLPEYEHRIVRVSVARSLKMLQQGKAVVCDVNLLK 94 (293)
T ss_pred CCCCEEEE-ECCCCEEEE--ECCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 72111511-147872687--088028973168872033679999836547513899866789999863886021551447
Q ss_pred CHHHHHHHCCC--CCCC-CCCCCCCCCCCCC-CCCCCC-----CCC------CCCEEEECC----CHHHHHHHCCCC---
Q ss_conf 75675420023--3322-2222222111222-211111-----233------432023101----012233201345---
Q gi|254781112|r 112 TPERQKKYDFS--IPYI-AHRVLLVVRSDQQ-DIRSFK-----DLT------DKTVAQILG----TDLSRFAKELKS--- 169 (274)
Q Consensus 112 t~eR~~~~~fs--~p~~-~~~~~~~~~~~~~-~~~~~~-----dL~------g~~V~~~~g----~~~~~~l~~~~~--- 169 (274)
T Consensus 95 TPEReK~~~Fstf~~~~~~~p~glv~~~~~~~~~~~~~~G~~VdL~~Ll~~~~~~~~~~a~RsYg~~ID~~L~~~~~~~~ 174 (293)
T TIGR02285 95 TPEREKFLIFSTFDPTLVVLPVGLVLRKELAAEVRDLADGDDVDLKKLLASKKLRLGVIASRSYGAQIDDILKDKKDKKN 174 (293)
T ss_pred CCCHHHHEECCHHHHHHHHCCCCEEECCCCCCCCCHHCCCCCHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCCC
T ss_conf 86154320001247898647842365222232351120676101788731888644788630115789999973689624
Q ss_pred -CCEEECCHHH-HHHHHHHHHHHCCCCCHHHHHHHHH-------------HCCCCCCCEEECC--CCCCCCCEEEEEECC
Q ss_conf -4213368557-7775544321003665589999998-------------4587667326236--776877079998189
Q gi|254781112|r 170 -HLVFSHNFEQ-SLQLLLSKRTDATMIPDIPFFNFLE-------------RRPHDGNLFKIAD--RMKDNSAVAFMMRKG 232 (274)
Q Consensus 170 -~~~~~~~~~~-~~~~l~~grvD~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~--~~~~~~~~~~~~~k~ 232 (274)
T Consensus 175 ~~~~~n~~~~nGl~~mL~~~R~~~tL~Y~~E~~Yy~~skfGyGsstvsdl~~~~~~~~~~~lpv~g~~~~i~v~vaCpkt 254 (293)
T TIGR02285 175 SRVIGNAASGNGLFKMLEKGRVQYTLAYPPEVVYYEESKFGYGSSTVSDLQKKGALAPLKFLPVAGVAAEISVVVACPKT 254 (293)
T ss_pred CCEECCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 22205553035799997524333031452332444431145551468888724577881264004777677899840888
Q ss_pred --CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf --98999999999999997985999998767888
Q gi|254781112|r 233 --NNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274)
Q Consensus 233 --~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274)
T Consensus 255 ~wG~~~~~dId~~L~~~~~~~~~~~~~~rWL~~~ 288 (293)
T TIGR02285 255 EWGRKVVADIDQLLSELKVDPKYEKAVDRWLSLE 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHH
T ss_conf 7789999999999886430411254442048915