HHsearch alignment for GI: 254781112 and conserved domain: TIGR03061
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=94.33 E-value=0.19 Score=28.63 Aligned_cols=61 Identities=13% Similarity=0.260 Sum_probs=40.5
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCC--CCCCCCCCCHHHHHHHHHCCCCCCCHHC
Q ss_conf 895899962899872487046998488988521678997629--9855566898898864310322110000
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLN--LKVEFFETAVSGLITGLDTNRYDVLVNV 109 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg--~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 109 (274)
T Consensus 41 ~~~lpvAV---------VN~D~g~~~~g~~~~~G~~lv~~L~~~~~~~w~~vs~~~A~~gl~~G~yy~~i~I 103 (164)
T TIGR03061 41 LDNLPVAV---------VNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHFVSAKEAEKGLADGKYYMVITI 103 (164)
T ss_pred CCCCEEEE---------EECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCEEEEEEE
T ss_conf 57871899---------9778786508815228999999873388861798489999988864956999997