Query gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 274
No_of_seqs 120 out of 6677
Neff 9.2
Searched_HMMs 39220
Date Mon May 30 05:04:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781112.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11260 cystine transporter s 100.0 0 0 340.4 21.1 257 5-266 1-263 (264)
2 PRK10797 glutamate and asparta 100.0 0 0 329.7 19.6 258 8-269 3-278 (302)
3 PRK09495 glnH glutamine ABC tr 100.0 0 0 320.9 20.0 220 39-264 23-245 (247)
4 TIGR01096 3A0103s03R lysine-ar 100.0 2.9E-44 0 293.3 16.4 232 28-261 14-333 (333)
5 PRK11917 bifunctional adhesin/ 100.0 7.4E-44 0 290.9 18.1 244 8-261 3-258 (259)
6 pfam00497 SBP_bac_3 Bacterial 100.0 8.9E-42 0 278.1 16.6 216 43-263 1-224 (224)
7 smart00062 PBPb Bacterial peri 100.0 3.9E-41 1.4E-45 274.1 16.6 216 42-261 1-219 (219)
8 cd00134 PBPb Bacterial peripla 100.0 4E-41 1.4E-45 274.0 15.5 215 43-261 1-218 (218)
9 TIGR02995 ectoine_ehuB ectoine 100.0 1.8E-34 4.6E-39 232.8 12.7 235 27-264 20-271 (285)
10 PRK09959 hybrid sensory histid 100.0 5.7E-33 1.5E-37 223.6 14.3 223 36-264 297-522 (1197)
11 COG0834 HisJ ABC-type amino ac 100.0 2.7E-31 6.9E-36 213.2 18.8 227 35-266 28-268 (275)
12 PRK10859 putative transglycosy 100.0 4.2E-31 1.1E-35 212.0 12.4 222 35-264 37-269 (507)
13 PRK09959 hybrid sensory histid 99.9 1.3E-25 3.3E-30 178.1 15.9 223 37-264 52-280 (1197)
14 COG4623 Predicted soluble lyti 99.9 3.2E-23 8.2E-28 163.3 11.7 222 34-263 16-248 (473)
15 KOG1052 consensus 99.6 8.1E-14 2.1E-18 105.1 13.2 226 40-273 215-581 (656)
16 TIGR03431 PhnD phosphonate ABC 99.5 1.8E-13 4.5E-18 103.1 10.8 207 40-260 26-263 (288)
17 KOG1053 consensus 99.5 2.9E-14 7.3E-19 107.9 6.0 196 66-262 466-806 (1258)
18 TIGR01098 3A0109s03R phosphona 99.4 1.3E-12 3.2E-17 97.8 7.4 195 40-246 50-298 (299)
19 TIGR02285 TIGR02285 conserved 99.4 1.2E-11 3.1E-16 91.7 11.4 222 40-264 18-288 (293)
20 COG3221 PhnD ABC-type phosphat 99.4 7E-12 1.8E-16 93.2 10.2 211 36-258 30-269 (299)
21 pfam00060 Lig_chan Ligand-gate 99.2 1.9E-10 4.7E-15 84.4 9.3 126 134-263 95-238 (270)
22 PRK11553 alkanesulfonate trans 99.2 9.2E-10 2.3E-14 80.1 12.4 211 37-264 23-258 (314)
23 smart00079 PBPe Eukaryotic hom 99.1 4.4E-10 1.1E-14 82.1 8.8 116 141-262 2-133 (134)
24 KOG1054 consensus 99.1 1.5E-10 3.7E-15 85.0 5.7 218 40-261 416-790 (897)
25 KOG4440 consensus 99.1 1.1E-10 2.7E-15 85.8 3.4 192 66-263 463-806 (993)
26 TIGR03427 ABC_peri_uca ABC tra 98.9 7.1E-09 1.8E-13 74.6 8.5 209 40-264 1-239 (328)
27 PRK11480 tauA taurine transpor 98.8 1.9E-08 5E-13 71.9 6.7 206 39-265 21-260 (320)
28 pfam09084 NMT1 NMT1/THI5 like. 98.6 2.1E-08 5.4E-13 71.6 3.4 128 74-203 13-155 (216)
29 COG0715 TauA ABC-type nitrate/ 98.6 4.7E-07 1.2E-11 63.3 10.3 190 72-264 50-268 (335)
30 PRK09861 cytoplasmic membrane 98.2 1E-05 2.6E-10 55.0 8.8 202 36-265 27-268 (272)
31 PRK11063 metQ DL-methionine tr 98.2 2E-05 5.2E-10 53.2 9.8 199 37-263 27-265 (271)
32 COG0725 ModA ABC-type molybdat 98.1 2.2E-05 5.7E-10 53.0 8.8 202 36-260 25-252 (258)
33 COG4521 TauA ABC-type taurine 98.1 0.00022 5.5E-09 46.8 13.1 190 42-247 30-239 (334)
34 PRK10677 modA molybdate transp 98.1 7.6E-05 1.9E-09 49.7 10.3 202 35-260 21-252 (257)
35 COG2358 Imp TRAP-type uncharac 97.9 1.1E-05 2.7E-10 54.9 3.8 145 38-194 23-192 (321)
36 COG1638 DctP TRAP-type C4-dica 97.8 0.00021 5.3E-09 47.0 8.6 173 70-247 47-265 (332)
37 TIGR01729 taurine_ABC_bnd taur 97.7 0.00012 3E-09 48.5 7.0 174 73-249 21-215 (304)
38 PRK09501 potD spermidine/putre 97.7 0.0006 1.5E-08 44.1 9.4 210 29-263 15-293 (348)
39 COG1464 NlpA ABC-type metal io 97.6 0.00016 4.2E-09 47.6 5.7 198 41-266 29-266 (268)
40 COG1732 OpuBC Periplasmic glyc 97.6 4.8E-05 1.2E-09 50.9 2.6 203 37-259 29-281 (300)
41 COG4588 AcfC Accessory coloniz 97.5 0.00045 1.2E-08 44.9 7.6 180 68-260 34-248 (252)
42 pfam03401 Bug Tripartite trica 97.3 0.0012 3.1E-08 42.2 7.3 141 123-265 73-246 (274)
43 pfam03180 Lipoprotein_9 NLPA l 97.1 0.00065 1.7E-08 43.9 4.0 194 43-265 1-232 (236)
44 CHL00180 rbcR LysR transcripti 97.1 0.02 5.1E-07 34.7 11.5 177 38-233 92-286 (307)
45 PRK09791 putative DNA-binding 97.1 0.0073 1.9E-07 37.4 9.1 190 39-248 93-294 (302)
46 pfam03466 LysR_substrate LysR 97.0 0.0024 6.2E-08 40.3 6.3 174 39-233 4-191 (209)
47 COG4663 FcbT1 TRAP-type mannit 96.9 0.012 3.1E-07 36.0 9.5 72 30-108 24-101 (363)
48 PRK11151 DNA-binding transcrip 96.8 0.014 3.7E-07 35.6 9.2 188 40-249 90-291 (305)
49 PRK12684 transcriptional regul 96.8 0.021 5.3E-07 34.6 10.0 202 39-263 91-306 (313)
50 PRK11242 DNA-binding transcrip 96.8 0.0094 2.4E-07 36.7 8.2 171 39-233 89-274 (292)
51 PRK12683 transcriptional regul 96.8 0.044 1.1E-06 32.6 11.7 174 39-233 91-278 (308)
52 PRK12679 cbl transcriptional r 96.8 0.045 1.1E-06 32.5 11.6 189 39-249 91-293 (316)
53 pfam04069 OpuAC Substrate bind 96.7 0.004 1E-07 39.0 5.6 167 70-242 17-224 (256)
54 pfam03480 SBP_bac_7 Bacterial 96.7 0.0012 3E-08 42.3 2.9 103 140-247 126-233 (285)
55 PRK12682 transcriptional regul 96.2 0.1 2.6E-06 30.3 11.6 187 39-247 91-291 (309)
56 PRK12681 cysB transcriptional 96.2 0.067 1.7E-06 31.4 9.1 174 39-233 91-278 (324)
57 PRK10341 DNA-binding transcrip 96.0 0.056 1.4E-06 31.9 8.1 157 70-233 113-281 (312)
58 COG3181 Uncharacterized protei 96.0 0.039 1E-06 32.9 7.2 133 125-259 119-284 (319)
59 TIGR01728 SsuA_fam ABC transpo 95.9 0.024 6.2E-07 34.2 5.9 134 72-207 22-178 (311)
60 PRK12680 transcriptional regul 95.8 0.15 3.8E-06 29.3 9.6 201 39-264 91-307 (327)
61 TIGR03414 ABC_choline_bnd chol 95.7 0.036 9.3E-07 33.1 6.1 213 36-264 3-263 (290)
62 PRK11074 putative DNA-binding 95.7 0.1 2.6E-06 30.3 8.2 199 39-261 90-299 (300)
63 PRK04168 hypothetical protein; 95.6 0.043 1.1E-06 32.6 6.2 211 36-266 28-318 (336)
64 PRK11062 nhaR transcriptional 95.6 0.13 3.3E-06 29.6 8.6 188 40-246 92-292 (296)
65 PRK09755 putative binding prot 95.6 0.19 4.9E-06 28.6 9.9 82 171-265 244-330 (535)
66 PRK10682 putrescine transporte 95.4 0.22 5.6E-06 28.2 11.0 208 34-263 23-314 (370)
67 TIGR01256 modA molybdate ABC t 95.3 0.045 1.2E-06 32.5 5.4 183 71-260 10-224 (225)
68 COG1910 Periplasmic molybdate- 95.0 0.051 1.3E-06 32.2 5.0 156 78-245 14-198 (223)
69 PRK00489 hisG ATP phosphoribos 94.9 0.064 1.6E-06 31.6 5.3 170 85-266 47-223 (287)
70 PRK11119 proX glycine betaine 94.5 0.096 2.4E-06 30.5 5.3 116 40-169 29-177 (332)
71 PRK09986 DNA-binding transcrip 94.4 0.29 7.5E-06 27.5 7.6 184 39-247 79-276 (278)
72 TIGR03061 pip_yhgE_Nterm YhgE/ 94.3 0.19 4.9E-06 28.6 6.5 61 40-109 41-103 (164)
73 TIGR00787 dctP TRAP transporte 94.3 0.045 1.1E-06 32.5 3.2 123 124-255 118-245 (267)
74 COG4143 TbpA ABC-type thiamine 94.2 0.44 1.1E-05 26.4 8.2 216 40-271 25-300 (336)
75 COG0687 PotD Spermidine/putres 94.1 0.46 1.2E-05 26.3 13.0 187 72-263 47-307 (363)
76 PRK11205 tbpA thiamine transpo 93.9 0.51 1.3E-05 26.0 8.4 206 38-258 16-275 (326)
77 PRK11013 DNA-binding transcrip 93.4 0.61 1.6E-05 25.5 9.6 173 39-233 92-277 (309)
78 PRK11233 nitrogen assimilation 93.0 0.71 1.8E-05 25.1 10.8 193 39-250 89-293 (305)
79 TIGR03339 phn_lysR aminoethylp 92.7 0.77 2E-05 24.9 8.6 175 40-240 86-276 (279)
80 COG1511 Predicted membrane pro 92.7 0.78 2E-05 24.8 8.0 57 53-109 50-108 (780)
81 COG2113 ProX ABC-type proline/ 92.7 0.15 3.9E-06 29.2 3.8 131 36-179 26-181 (302)
82 TIGR00212 hemC porphobilinogen 92.3 0.57 1.4E-05 25.7 6.3 132 93-242 62-218 (312)
83 PRK03537 hypothetical protein; 92.2 0.47 1.2E-05 26.2 5.8 135 123-262 17-183 (188)
84 PRK09508 leuO leucine transcri 91.6 1.1 2.7E-05 24.0 8.7 155 71-232 129-294 (314)
85 PRK01066 porphobilinogen deami 91.6 1.1 2.7E-05 24.0 9.3 136 93-241 80-227 (234)
86 pfam10613 Lig_chan-Glu_bd Liga 91.4 0.045 1.2E-06 32.5 -0.2 31 60-90 13-43 (65)
87 PRK11716 DNA-binding transcrip 91.0 1.2 3.1E-05 23.6 7.4 175 39-233 65-253 (269)
88 PRK09906 DNA-binding transcrip 90.7 1.3 3.3E-05 23.5 8.1 173 39-233 88-275 (296)
89 TIGR03261 phnS2 putative 2-ami 89.7 1.6 4E-05 23.0 7.8 190 71-266 37-288 (334)
90 TIGR02424 TF_pcaQ pca operon t 88.3 0.3 7.8E-06 27.4 2.0 192 37-247 89-297 (300)
91 pfam00405 Transferrin Transfer 87.7 2.1 5.5E-05 22.1 6.3 113 88-202 34-212 (328)
92 pfam01379 Porphobil_deam Porph 86.7 1.8 4.5E-05 22.6 5.2 138 93-240 61-212 (213)
93 PRK00072 hemC porphobilinogen 86.3 2.6 6.5E-05 21.6 6.1 158 93-265 64-241 (300)
94 COG0040 HisG ATP phosphoribosy 86.0 1.4 3.5E-05 23.4 4.3 149 91-249 52-211 (290)
95 PRK10852 thiosulfate transport 85.6 2.8 7E-05 21.4 6.2 135 122-261 115-284 (338)
96 PRK01686 hisG ATP phosphoribos 85.5 0.84 2.1E-05 24.7 3.0 152 85-248 48-205 (212)
97 pfam01634 HisG ATP phosphoribo 84.9 1.3 3.4E-05 23.4 3.8 146 93-248 5-158 (161)
98 PRK10752 sulfate transporter s 84.5 3.1 7.9E-05 21.1 6.5 182 71-261 42-278 (329)
99 cd00494 HMBS Hydroxymethylbila 83.9 3.3 8.4E-05 21.0 6.7 159 92-265 59-237 (292)
100 PRK09474 malE maltose ABC tran 82.2 1.1 2.9E-05 23.8 2.6 108 28-148 16-157 (394)
101 COG2107 Predicted periplasmic 81.9 1.2 2.9E-05 23.8 2.5 100 145-246 91-198 (272)
102 PRK11482 putative DNA-binding 80.2 4.5 0.00011 20.1 7.0 152 71-232 83-248 (266)
103 PRK11466 hybrid sensory histid 79.0 4.9 0.00013 19.9 5.5 76 116-196 653-734 (912)
104 PRK10837 putative DNA-binding 78.4 5.1 0.00013 19.8 8.9 174 39-233 87-273 (291)
105 TIGR03227 PhnS 2-aminoethylpho 77.9 3.7 9.4E-05 20.7 4.0 136 71-206 56-244 (367)
106 PRK10216 DNA-binding transcrip 75.9 6 0.00015 19.3 8.1 135 71-206 83-236 (288)
107 PRK03601 transcriptional regul 69.0 8.7 0.00022 18.4 7.6 177 39-245 87-268 (275)
108 COG0181 HemC Porphobilinogen d 68.8 8.8 0.00023 18.3 6.3 156 93-264 63-239 (307)
109 PRK10094 DNA-binding transcrip 68.1 9.1 0.00023 18.2 8.1 183 40-241 91-287 (308)
110 PRK13583 hisG ATP phosphoribos 67.0 7.4 0.00019 18.8 3.5 121 85-208 48-190 (226)
111 PRK00178 tolB translocation pr 66.6 2.8 7.2E-05 21.4 1.3 40 41-90 34-73 (433)
112 PRK04281 consensus 65.5 5.7 0.00014 19.5 2.6 41 67-107 60-102 (254)
113 PRK00830 consensus 64.2 4.9 0.00013 19.9 2.1 41 67-107 64-106 (273)
114 TIGR02743 TraW type-F conjugat 62.7 8.8 0.00022 18.3 3.2 66 70-138 34-111 (217)
115 COG2998 TupB ABC-type tungstat 62.1 6.2 0.00016 19.3 2.3 93 37-143 26-125 (280)
116 PRK01033 imidazole glycerol ph 61.5 6.3 0.00016 19.2 2.3 41 67-107 60-102 (253)
117 PRK11091 aerobic respiration c 61.5 12 0.00031 17.5 5.5 52 145-196 521-577 (779)
118 TIGR02294 nickel_nikA nickel A 60.4 5.8 0.00015 19.4 1.9 78 170-247 201-287 (513)
119 PRK10693 response regulator of 58.2 9.6 0.00024 18.1 2.7 34 72-106 22-55 (337)
120 PRK02145 consensus 56.5 7.6 0.00019 18.7 2.0 42 67-108 61-104 (257)
121 PRK03629 tolB translocation pr 56.4 4.6 0.00012 20.1 0.8 36 42-87 34-69 (430)
122 PRK01742 tolB translocation pr 55.1 7.2 0.00018 18.9 1.7 20 70-89 54-73 (430)
123 PRK01659 consensus 55.1 9.6 0.00025 18.1 2.3 42 67-108 60-103 (252)
124 PRK10653 D-ribose transporter 53.5 11 0.00029 17.6 2.5 61 36-107 22-87 (295)
125 PRK13738 conjugal transfer pil 53.5 17 0.00042 16.6 4.0 55 26-101 7-62 (210)
126 PRK11899 prephenate dehydratas 53.5 9.6 0.00024 18.1 2.1 113 84-202 28-157 (284)
127 TIGR02144 LysX_arch Lysine bio 53.5 7.7 0.0002 18.7 1.6 34 68-101 110-145 (289)
128 pfam06510 DUF1102 Protein of u 53.2 16 0.0004 16.8 3.2 10 53-64 52-61 (183)
129 TIGR00070 hisG ATP phosphoribo 52.7 4.7 0.00012 20.0 0.4 147 96-250 58-239 (317)
130 TIGR03572 WbuZ glycosyl amidat 52.3 11 0.00027 17.8 2.2 41 67-107 60-102 (232)
131 PRK02621 consensus 52.1 12 0.0003 17.6 2.3 42 67-108 60-103 (254)
132 pfam00800 PDT Prephenate dehyd 51.6 8.9 0.00023 18.3 1.7 117 80-202 19-154 (181)
133 PRK11898 prephenate dehydratas 51.2 10 0.00027 17.9 2.0 113 83-202 26-158 (285)
134 PRK02083 imidazole glycerol ph 50.5 11 0.00029 17.7 2.1 42 67-108 60-103 (253)
135 PRK02747 consensus 49.9 13 0.00032 17.4 2.2 42 67-108 60-103 (257)
136 COG0107 HisF Imidazoleglycerol 49.8 9.8 0.00025 18.0 1.7 23 174-196 208-230 (256)
137 PRK07239 bifunctional uroporph 49.8 19 0.00048 16.3 4.3 59 145-203 138-216 (381)
138 TIGR03298 argP transcriptional 48.9 20 0.0005 16.2 8.6 189 40-249 89-290 (292)
139 COG1613 Sbp ABC-type sulfate t 48.6 20 0.0005 16.2 6.5 136 122-259 126-293 (348)
140 COG0583 LysR Transcriptional r 47.7 20 0.00052 16.1 8.4 154 71-232 109-273 (297)
141 PRK13684 Ycf48-like protein; P 46.7 17 0.00044 16.5 2.6 19 1-19 1-19 (333)
142 TIGR00631 uvrb excinuclease AB 46.6 13 0.00032 17.4 1.8 29 81-109 471-504 (667)
143 cd04731 HisF The cyclase subun 46.5 16 0.0004 16.8 2.3 42 67-108 57-100 (243)
144 pfam01715 IPPT IPP transferase 46.2 22 0.00055 15.9 5.4 44 223-266 153-199 (253)
145 pfam02621 DUF178 Putative peri 45.6 22 0.00056 15.9 4.7 26 81-106 24-49 (248)
146 PRK04792 tolB translocation pr 45.1 9.1 0.00023 18.2 0.9 40 42-91 35-74 (450)
147 TIGR00174 miaA tRNA delta(2)-i 44.6 23 0.00058 15.8 3.2 36 227-262 190-229 (307)
148 PRK05211 consensus 43.2 19 0.00048 16.3 2.3 41 67-107 51-93 (248)
149 PRK05137 tolB translocation pr 41.1 10 0.00027 17.9 0.7 23 67-89 54-76 (437)
150 PRK02515 psbU photosystem II c 39.2 28 0.00071 15.3 3.0 21 1-21 1-21 (144)
151 TIGR00971 3a0106s03 sulfate AB 38.8 28 0.00072 15.2 6.7 139 122-262 103-273 (320)
152 PRK10743 heat shock protein Ib 37.9 11 0.00027 17.8 0.3 34 48-85 31-64 (137)
153 TIGR02129 hisA_euk phosphoribo 37.4 13 0.00034 17.2 0.8 55 140-199 191-258 (274)
154 TIGR00735 hisF imidazoleglycer 37.0 11 0.00027 17.8 0.2 21 176-196 268-288 (312)
155 cd01424 MGS_CPS_II Methylglyox 36.8 22 0.00056 15.9 1.8 34 77-110 39-75 (110)
156 PRK11139 DNA-binding transcrip 35.6 32 0.0008 14.9 8.8 185 39-247 92-292 (295)
157 TIGR01980 sufB FeS assembly pr 35.1 25 0.00063 15.6 1.8 12 188-199 387-398 (469)
158 TIGR01054 rgy reverse gyrase; 34.3 11 0.00028 17.8 -0.1 18 91-108 401-418 (1843)
159 PRK04922 tolB translocation pr 34.2 26 0.00067 15.4 1.9 40 42-90 38-77 (439)
160 TIGR00623 sula cell division i 33.6 27 0.00068 15.3 1.8 61 91-152 99-162 (168)
161 pfam10991 DUF2815 Protein of u 33.6 34 0.00087 14.7 5.0 16 42-57 7-22 (181)
162 cd01423 MGS_CPS_I_III Methylgl 32.9 24 0.00061 15.6 1.5 34 77-110 39-79 (116)
163 PRK13357 branched-chain amino 32.8 17 0.00044 16.5 0.7 43 153-196 259-302 (357)
164 PRK00050 mraW S-adenosyl-methy 32.8 35 0.00089 14.6 3.7 41 223-263 206-255 (309)
165 COG2182 MalE Maltose-binding p 32.5 29 0.00074 15.1 1.9 24 71-94 58-81 (420)
166 pfam00072 Response_reg Respons 29.6 36 0.00091 14.6 1.9 33 163-195 17-49 (111)
167 COG2247 LytB Putative cell wal 29.5 40 0.001 14.3 3.1 81 72-162 43-145 (337)
168 PRK11597 heat shock chaperone 29.4 19 0.00048 16.3 0.5 34 48-85 29-62 (142)
169 TIGR00004 TIGR00004 endoribonu 29.2 30 0.00077 15.0 1.5 23 251-273 86-108 (129)
170 pfam01795 Methyltransf_5 MraW 29.1 32 0.00082 14.8 1.6 46 61-106 44-97 (310)
171 PRK13584 hisG ATP phosphoribos 29.0 36 0.00091 14.6 1.8 149 84-249 45-199 (204)
172 TIGR02122 TRAP_TAXI TRAP trans 28.7 25 0.00064 15.5 1.0 128 71-199 44-197 (319)
173 pfam02642 consensus 27.5 43 0.0011 14.1 2.1 149 88-247 34-196 (259)
174 cd00156 REC Signal receiver do 27.4 43 0.0011 14.1 2.0 34 163-196 16-49 (113)
175 COG4150 CysP ABC-type sulfate 27.3 18 0.00047 16.4 0.1 27 121-148 119-146 (341)
176 COG0275 Predicted S-adenosylme 26.9 44 0.0011 14.0 6.1 46 220-265 207-261 (314)
177 KOG0623 consensus 26.4 44 0.0011 14.0 1.9 18 252-269 378-395 (541)
178 PRK11289 ampC beta-lactamase; 26.3 45 0.0012 13.9 2.2 32 5-36 1-32 (387)
179 COG0077 PheA Prephenate dehydr 26.0 34 0.00087 14.7 1.3 117 79-202 22-158 (279)
180 TIGR01752 flav_long flavodoxin 25.5 47 0.0012 13.8 5.2 156 63-250 7-174 (176)
181 TIGR01132 pgm phosphoglucomuta 24.3 36 0.00092 14.5 1.2 34 39-87 229-262 (553)
182 PRK02889 tolB translocation pr 23.6 47 0.0012 13.8 1.6 16 68-83 53-68 (430)
183 PRK03147 thiol-disulfide oxido 23.6 48 0.0012 13.7 1.7 21 41-65 34-54 (176)
184 PRK12450 foldase protein PrsA; 23.5 51 0.0013 13.6 2.8 20 5-24 1-20 (309)
185 PRK00059 prsA peptidylprolyl i 23.3 35 0.0009 14.6 0.9 20 5-24 1-20 (336)
186 KOG4596 consensus 22.4 36 0.00093 14.5 0.9 38 234-272 1478-1517(1936)
187 PRK09590 celB cellobiose phosp 21.8 55 0.0014 13.4 1.8 33 74-106 22-54 (104)
188 pfam00496 SBP_bac_5 Bacterial 21.7 55 0.0014 13.4 5.0 70 171-245 150-224 (361)
189 TIGR02089 TTC tartrate dehydro 21.6 41 0.001 14.2 1.0 24 72-95 25-49 (355)
190 PRK13348 chromosome replicatio 21.4 56 0.0014 13.3 9.3 160 73-242 109-284 (294)
191 cd06155 eu_AANH_C_1 A group of 21.2 44 0.0011 14.0 1.1 14 252-265 64-77 (101)
192 COG1197 Mfd Transcription-repa 21.2 57 0.0014 13.3 1.9 10 181-190 690-699 (1139)
No 1
>PRK11260 cystine transporter subunit; Provisional
Probab=100.00 E-value=0 Score=340.42 Aligned_cols=257 Identities=25% Similarity=0.448 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCC
Q ss_conf 99999999999999999999999998--4178878858958999628998724870469984889885216789976299
Q gi|254781112|r 5 LRDLRKIFFSKYLFFAPFFILFSYYF--VIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNL 82 (274)
Q Consensus 5 ~~~mk~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~ 82 (274)
|++|.|..+...+.++++..+.+.+. .....+++++|+|+||++++||||+|. |.+|+++||++|+++++++++|+
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~L~~I~~~G~L~Vg~~~~~pPf~~~--d~~G~~~GfdvDl~~~ia~~lg~ 78 (264)
T PRK11260 1 LAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLLVGLEGTYPPFSFQ--GEDGKLTGFEVEFAEALAKHLGV 78 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEE--CCCCCEEEEEHHHHHHHHHHHCC
T ss_conf 9046799999999999999835765434243999986998999977898893689--99999888719999999998499
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCHH
Q ss_conf 8555668988988643103221100-00367567542002333222222222111222-211111233432023101012
Q gi|254781112|r 83 KVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQ-DIRSFKDLTDKTVAQILGTDL 160 (274)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~-~~~~~~dL~g~~V~~~~g~~~ 160 (274)
+++|++++|++++..|++|++|+++ ++++|+||++.+.||.||+.....+++++++. .+++++||+|++||+..|+.+
T Consensus 79 ~~e~~~~~~~~~i~~L~~g~~Di~~~~~t~T~eR~~~~~Fs~PY~~~~~~~~v~~~~~~~i~~~~dL~Gk~V~v~~gs~~ 158 (264)
T PRK11260 79 KASLKPTKWDGMLASLDSKRIDVVINQVTISDERKKKYDFSTPYTVSGIQALVKKGNEGTIKTAADLKGKKVGVGLGTNY 158 (264)
T ss_pred CEEEEECCHHHHHHHHHCCCCCEEECCCCCCHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCHHHHCCCEEEEECCCHH
T ss_conf 56999788899999986699466725753588888517767743774459999878976668978966871688569789
Q ss_pred HHHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 2332013--45421336855777755443210036655899999984587667326236776877079998189989999
Q gi|254781112|r 161 SRFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTR 238 (274)
Q Consensus 161 ~~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~ 238 (274)
++++++. +.++..+++..+++++|.+||+|+++.+...+.++.++.+.. ..+..++....+++++++|++++|++
T Consensus 159 ~~~l~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~iav~k~~~~L~~ 235 (264)
T PRK11260 159 EEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDT---LAVTGEAFSRQESGVALRKGNPDLLK 235 (264)
T ss_pred HHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCC---EEECCCCCCCCEEEEEEECCCHHHHH
T ss_conf 999986088981686366189999987598679994599999999868997---89806876665089999899999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf 9999999999798599999876788877
Q gi|254781112|r 239 SINEILCAIHLDGTYKKIFDRYFDKNII 266 (274)
Q Consensus 239 ~in~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274)
.+|++|.+|++||++++|++||||.|+.
T Consensus 236 ~in~~L~~l~~dG~~~~i~~KwfG~D~t 263 (264)
T PRK11260 236 AVNNAIAEMQKDGTLKALSEKWFGADVT 263 (264)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHCCCCCC
T ss_conf 9999999999677799999765799899
No 2
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=100.00 E-value=0 Score=329.66 Aligned_cols=258 Identities=19% Similarity=0.269 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC---
Q ss_conf 999999999999999999999----9841788788589589996289987248704699848898852167899762---
Q gi|254781112|r 8 LRKIFFSKYLFFAPFFILFSY----YFVIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL--- 80 (274)
Q Consensus 8 mk~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l--- 80 (274)
|||++...+.+.++..+..+. +......++.++|+|+||++.+||||+|. |.+|++.||++|++++|++.+
T Consensus 3 ~kk~~~~~l~~~l~~~~~~~~~~~~a~~~tL~~Ik~~G~l~vG~~~~~pPf~~~--d~~g~~vGfdvDla~~ia~~l~~~ 80 (302)
T PRK10797 3 LRKLATALLALGLSAGLAQAEDAAPAAGSTLDKIAKNGVIVVGHRESSVPFSYY--DNQQKVVGYSQDYSNAIVEAVKKK 80 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEE--CCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 589999999999999997456777532271999986998999989998997168--999985154179999999999877
Q ss_pred ----CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf ----998555668988988643103221100-003675675420023332222222221112222111112334320231
Q gi|254781112|r 81 ----NLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQI 155 (274)
Q Consensus 81 ----g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~ 155 (274)
+++++|++++|+.++++|++|++|+++ ++++|+||++.++||.||+..+..+++++++ .+++++||+||+||++
T Consensus 81 l~~~~~~v~~v~~~~~~rip~L~~gk~Di~~~~~t~T~eR~k~vdFS~pY~~~~~~llv~k~s-~Iks~~DL~GK~V~V~ 159 (302)
T PRK10797 81 LNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNLERQKQAAFSDTIFVVGTRLLTKKGG-DIKDFADLKGKAVVVT 159 (302)
T ss_pred HCCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHHCCEEECCCCEECCEEEEEECCC-CCCCHHHHCCCEEEEE
T ss_conf 446773499997578887799978980889735756977741242146627714689997788-6667566089979996
Q ss_pred CCCHHHHHHHC------CCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEE
Q ss_conf 01012233201------345421336855777755443210036655899999984587667326236776877079998
Q gi|254781112|r 156 LGTDLSRFAKE------LKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMM 229 (274)
Q Consensus 156 ~g~~~~~~l~~------~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (274)
.|++.+.++++ .+.+++.+++..++++.|.+||+|+++.|......+..+...... +.+...+....++++++
T Consensus 160 ~GTt~e~~~~~~~~~~~~~~~iv~~~~~~~a~~~L~~GrvDA~~~D~~~l~~~~~~~~~~~~-~~iv~~~~~~e~ygia~ 238 (302)
T PRK10797 160 SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDN-WEIVGKPQSQEAYGCML 238 (302)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCC-EEEECCCCCCCCEEEEE
T ss_conf 78739999998667506772378508889999999859950998122988899986369975-49937867776079999
Q ss_pred ECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
Q ss_conf 1899899999999999999798599999876788877568
Q gi|254781112|r 230 RKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNIISSV 269 (274)
Q Consensus 230 ~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~~~~ 269 (274)
+|+|++|++.+|++|.+|++||+|++|++||||+++++..
T Consensus 239 rKgd~~L~~~Vn~aL~~l~~dGt~~~I~~KWF~~p~P~~~ 278 (302)
T PRK10797 239 RKDDPQFKKLMDDTIAQAQTSGEAEKWFDKWFKNPIPPKN 278 (302)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC
T ss_conf 6899999999999999999778299999987599999998
No 3
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=100.00 E-value=0 Score=320.90 Aligned_cols=220 Identities=29% Similarity=0.453 Sum_probs=198.9
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC-HHCCCCHHHHH
Q ss_conf 58958999628998724870469984889885216789976299855566898898864310322110-00036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVL-VNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~-~~~~~t~eR~~ 117 (274)
+.++|+||++++||||+|. + .|++.||++|++++|++++|++++|++++|++++++|++|++|++ .++++|+||++
T Consensus 23 ~~~~l~Vg~~~~~pPf~f~--~-~g~~~GfdvDl~~~ia~~lg~~~e~~~~~~~~~i~~l~~g~~D~~~~~~~~T~eR~~ 99 (247)
T PRK09495 23 ADKELVVATDTAFVPFEFK--Q-GDKYVGFDVDLWAAIAKELKLDYTLKPMDFSGIIPALQTKNIDLALAGITITDERKK 99 (247)
T ss_pred CCCEEEEEECCCCCCEEEC--C-CCEEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCHHHHH
T ss_conf 4994999989987980576--7-992788299999999999699469997788999999976995636466014789984
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 20023332222222221112222111112334320231010122332013--4542133685577775544321003665
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274)
.++||.||+..+..+++++++..+++++||+|++||++.|+..++++++. +.++..+++.++++++|.+||+|+++.+
T Consensus 100 ~~~FS~py~~~~~~i~v~~~~~~i~~~~dL~Gk~v~v~~Gs~~~~~~~~~~~~~~i~~~~~~~~~~~aL~~GrvDa~v~d 179 (247)
T PRK09495 100 AIDFSDGYYKSGLLVMVKANNNDIKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYLELGTGRADAVLHD 179 (247)
T ss_pred HCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCEEEEEEC
T ss_conf 33347770772469999899977798245489889984695899999963889866965988999998765873499956
Q ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf 589999998458766732623677687707999818998999999999999997985999998767888
Q gi|254781112|r 196 DIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274)
...+.+++++.+.. .+.+...+....+++++++|+++ |++.||++|.+|++||+|++|++||||.|
T Consensus 180 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ia~~k~~~-L~~~in~aL~~l~~dG~~~~l~~kwfG~~ 245 (247)
T PRK09495 180 TPNILYFIKTAGNG--QFKAVGDSLEAQQYGIAFPKGSD-LREKVNGALKTLKENGTYNEIYKKWFGTE 245 (247)
T ss_pred HHHHHHHHHHCCCC--CEEEECCCCCCCEEEEEEECCHH-HHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 89999999848999--78994677776459999928829-99999999999997886999999867999
No 4
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein; InterPro: IPR005768 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The later are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homolog proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight families of clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homolog with catalytic activity. ; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=100.00 E-value=2.9e-44 Score=293.35 Aligned_cols=232 Identities=30% Similarity=0.484 Sum_probs=208.3
Q ss_pred HHHHHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCC-------CCCCCCCCCHHHHHHHHHC
Q ss_conf 998417887885895899962899872487046998488988521678997629-------9855566898898864310
Q gi|254781112|r 28 YYFVIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLN-------LKVEFFETAVSGLITGLDT 100 (274)
Q Consensus 28 ~~~~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg-------~~~~~~~~~~~~~~~~l~~ 100 (274)
++.++....+++++.|+||++++||||++. |.+|++.||+|||+++|++++. .+++|++.+|+++++.|+.
T Consensus 14 ~~~~a~~~a~~~~~~v~~gt~~~y~PF~~~--~a~G~~~GFDvDl~~alc~~~~gD~GWdh~~c~~~~~~~~~liPsL~~ 91 (333)
T TIGR01096 14 ASSAATAAAAKEKGSVRIGTETAYPPFEFK--DADGKLVGFDVDLANALCKEMKGDPGWDHAKCKFVEQAFDGLIPSLKA 91 (333)
T ss_pred HHHHCCHHHHHHCCCEEEEECCCCCCCCCC--CCCCCEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHC
T ss_conf 986215688852880799865787986551--889545632678999999984589996431488842756652025453
Q ss_pred CCCCCC-H-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------------------CC-CCCEEE
Q ss_conf 322110-0-003675675420023332222222221112222111112-----------------------33-432023
Q gi|254781112|r 101 NRYDVL-V-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKD-----------------------LT-DKTVAQ 154 (274)
Q Consensus 101 g~~D~~-~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~d-----------------------L~-g~~V~~ 154 (274)
|++|++ + ++++|++|++.+.||.|||..+..|++++|++..++.+| |+ |++|||
T Consensus 92 k~~Dai~an~~~It~~R~~~i~F~~~yy~~~~~f~v~~~~~~~~~~~~~E~~~Ld~~A~~~K~~~d~~~~~L~nG~~~gV 171 (333)
T TIGR01096 92 KKVDAIMANAMSITDERQKQIDFSDPYYATGAGFVVKKDSDLAKTLEDGENYSLDNQADAAKKEIDDVTKFLKNGKKVGV 171 (333)
T ss_pred CCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 80689972665546656632114430000443022224887543145330367200037989989989998527548986
Q ss_pred ECCCHHHHHHHCC------CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC----CC-----C
Q ss_conf 1010122332013------4542133685577775544321003665589999998458766732623----67-----7
Q gi|254781112|r 155 ILGTDLSRFAKEL------KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA----DR-----M 219 (274)
Q Consensus 155 ~~g~~~~~~l~~~------~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~ 219 (274)
+.||+.+.|+++. ..+++.|++.+++...|.+||+|+++.|...+..+..+.+.......+. .. .
T Consensus 172 ~~GTT~~~~~~~~~~~~Nl~v~~~~Y~~~~~~~~dL~~GR~Da~~~D~~~l~~~~~~~~~gkd~~~~g~~~~~~PLGP~~ 251 (333)
T TIGR01096 172 QSGTTHEQYLKDEFKPKNLGVDIVEYDSYDNANMDLKAGRIDAVLADASVLAEGFLKPPNGKDLKFVGPKVTDEPLGPVK 251 (333)
T ss_pred CCCCCHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 26884899998624433742666640886799999757962177436588888873789888637728322688989855
Q ss_pred CCCCC------------------EEEEEEC-------------------CC---HHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 68770------------------7999818-------------------99---89999999999999979859999987
Q gi|254781112|r 220 KDNSA------------------VAFMMRK-------------------GN---NKLTRSINEILCAIHLDGTYKKIFDR 259 (274)
Q Consensus 220 ~~~~~------------------~~~~~~k-------------------~~---~~L~~~in~~l~~l~~~G~~~~I~~k 259 (274)
....+ +|+++|| +| .+|...+|++|+.|++||+|++|++|
T Consensus 252 ~FG~g~W~DiV~W~~YAL~~A~E~Gig~rk~de~~~s~Np~i~r~lg~~~Dt~G~eL~~~~n~Al~~~~adGtY~~i~~k 331 (333)
T TIGR01096 252 YFGDGYWFDIVRWSAYALVAAEEVGIGLRKVDEVKASTNPEIKRLLGSEGDTIGKELKAKFNKALKAIRADGTYQKISKK 331 (333)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 57888300121446677763443212534558885188830232204556512189999999999999865874688865
Q ss_pred HC
Q ss_conf 67
Q gi|254781112|r 260 YF 261 (274)
Q Consensus 260 w~ 261 (274)
||
T Consensus 332 wf 333 (333)
T TIGR01096 332 WF 333 (333)
T ss_pred CC
T ss_conf 19
No 5
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=100.00 E-value=7.4e-44 Score=290.91 Aligned_cols=244 Identities=18% Similarity=0.284 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC---CC
Q ss_conf 99999999999999999999998--41788788589589996289987248704699848898852167899762---99
Q gi|254781112|r 8 LRKIFFSKYLFFAPFFILFSYYF--VIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL---NL 82 (274)
Q Consensus 8 mk~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l---g~ 82 (274)
+||.++...++.+..+...+.+. ......++++|+|+||++++||||+|.+ +.+|++.||++|++++|++++ ++
T Consensus 3 ~~~~l~~~~~~~l~~~~~~~~~~a~~~~l~~I~~~G~L~vg~~~~~pPf~~~d-~~~g~~~GfDvDla~~iAk~llg~~~ 81 (259)
T PRK11917 3 FRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGVKNDVPHYALLD-QATGEIKGFEIDVAKLLAKSILGDDK 81 (259)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHCCEEEEEECCCCCCCCEEE-CCCCCEEEEEHHHHHHHHHHHCCCCC
T ss_conf 27999999999999998634521114419999859989999878978862056-79996788879999999999659985
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHH
Q ss_conf 8555668988988643103221100-003675675420023332222222221112222111112334320231010122
Q gi|254781112|r 83 KVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLS 161 (274)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~ 161 (274)
+++|++++|+.+++.|++|++|+++ ++++|+||++.++||.||+.....+++++++ .+++++||+|++||+..|++.+
T Consensus 82 ~v~~v~~~~~~~~p~L~~gkvD~i~~~~tiT~eR~k~vdFS~PY~~~~~~ilv~k~~-~i~~~~DL~gk~Vgv~~gst~~ 160 (259)
T PRK11917 82 KIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEK-NYKSLADMKGANIGVAQAATTK 160 (259)
T ss_pred EEEEEEECHHHHHHHHHCCCEEEEEECCCCCCCHHCCEEECCCEEEEEEEEEEECCC-CCCCHHHHCCCCEEEEECCCHH
T ss_conf 699997067877689877985599866476765430576224769965599998999-9999899589817999278469
Q ss_pred HHHHC----CC--CCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHH
Q ss_conf 33201----34--5421336855777755443210036655899999984587667326236776877079998189989
Q gi|254781112|r 162 RFAKE----LK--SHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNK 235 (274)
Q Consensus 162 ~~l~~----~~--~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 235 (274)
..+.+ .+ .++..+++..++..+|.+||+|+++.+...+..+..+.. .+.+++..+.+++++++|++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~d~~~~~~~~~~~~------~~~~~~~~~~~~giavrKgd~~ 234 (259)
T PRK11917 161 KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKS------EILPDSFEPQSYGIVTKKDDPA 234 (259)
T ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEEECCHHHHHHHHHCCC------CCCCCCCCCCEEEEEEECCCHH
T ss_conf 9999988860885169964999999999984980299826999999986198------0168888752589999489989
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHC
Q ss_conf 99999999999997985999998767
Q gi|254781112|r 236 LTRSINEILCAIHLDGTYKKIFDRYF 261 (274)
Q Consensus 236 L~~~in~~l~~l~~~G~~~~I~~kw~ 261 (274)
|++.+|.+|++++ |++++|++||.
T Consensus 235 l~~~vn~~i~~~k--~~l~~i~~KWg 258 (259)
T PRK11917 235 FAKYVDDFVKEHK--NEIDALAKKWG 258 (259)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHC
T ss_conf 9999999999966--51999998649
No 6
>pfam00497 SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3.
Probab=100.00 E-value=8.9e-42 Score=278.07 Aligned_cols=216 Identities=37% Similarity=0.600 Sum_probs=193.1
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHHCC
Q ss_conf 89996289987248704699848898852167899762998555668988988643103221100-00367567542002
Q gi|254781112|r 43 LRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKKYDF 121 (274)
Q Consensus 43 l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~~f 121 (274)
||||++++||||.|. |++|++.|+++|+++++++++|++++++.+||.+++.+++.|++|+++ ++++|++|++.+.|
T Consensus 1 l~v~~~~~~pP~~~~--~~~G~~~G~~~dil~~i~~~lg~~~~~~~~p~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~~ 78 (224)
T pfam00497 1 LRVGTDADYPPFSYL--DEDGKLVGFDVDLAKAIAKRLGVKVEFVPVSWDGLIPALQSGKIDVIIAGMTITPERKKKVDF 78 (224)
T ss_pred CEEEECCCCCCCEEE--CCCCCEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHCC
T ss_conf 989958998991599--999978882999999999997996799985889999999769987661367788555102125
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEEECCCHHHHHHHCC---CCCCEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 333222222222111222----2111112334320231010122332013---454213368557777554432100366
Q gi|254781112|r 122 SIPYIAHRVLLVVRSDQQ----DIRSFKDLTDKTVAQILGTDLSRFAKEL---KSHLVFSHNFEQSLQLLLSKRTDATMI 194 (274)
Q Consensus 122 s~p~~~~~~~~~~~~~~~----~~~~~~dL~g~~V~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~grvD~~~~ 194 (274)
|.||+..+..++++++.. .+++++||+|++||++.|+.+..++... +.++..+.++++++++|.+||+|+++.
T Consensus 79 s~p~~~~~~~~~~~~~~~~~~~~~~~~~dL~~~~I~v~~g~~~~~~l~~~~~~~~~i~~~~~~~~~l~~L~~gr~D~~i~ 158 (224)
T pfam00497 79 SDPYYYSGQVLVVRKDSPPKIKSIKDLADLKGKKVGVQKGTTQEDLLKELAPKGAEIVLYDDQAEALQALAAGRVDAVVA 158 (224)
T ss_pred CCCEEECCEEEEEECCCCCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEEE
T ss_conf 75344047179999898765456589899779779996897799999860624451699542788888987497689995
Q ss_pred CHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 558999999845876673262367768770799981899899999999999999798599999876788
Q gi|254781112|r 195 PDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
+...+.+++++.+.. ......+....+++++++|++++|++.+|++|.+|++||++++|++||||+
T Consensus 159 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~~l~~~~n~~l~~l~~~G~~~~I~~ky~g~ 224 (224)
T pfam00497 159 DSPVAAYLIKKNPGL---NLVVGEPLSGEPYGIAVRKGDPELLAAVNKALAELKADGTLAKLYEKWFGK 224 (224)
T ss_pred CHHHHHHHHHHCCCC---EEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 799999999868997---299436777614999997999999999999999999684999999752899
No 7
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=100.00 E-value=3.9e-41 Score=274.07 Aligned_cols=216 Identities=38% Similarity=0.627 Sum_probs=195.9
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHHC
Q ss_conf 589996289987248704699848898852167899762998555668988988643103221100-0036756754200
Q gi|254781112|r 42 ALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKKYD 120 (274)
Q Consensus 42 ~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~~ 120 (274)
+||||++++||||.|. |++|+++|+.+|+++++++++|++++++.+||.+++..+++|++|+++ +.+++++|++.+.
T Consensus 1 ~i~v~~~~~~pP~~~~--~~~G~~~G~~~Dil~~~~~~lg~~i~~~~~~~~r~~~~l~~g~~D~~~~~~~~~~~r~~~~~ 78 (219)
T smart00062 1 TLRVGTNGDYPPFSFA--DEDGELTGFDVDLAKAIAKELGLKVEFVEVSFDNLLTALKSGKIDVVAAGMTITPERAKQVD 78 (219)
T ss_pred CEEEEECCCCCCEEEE--CCCCCEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHHCCC
T ss_conf 9899978998992799--99997788299999999999799679998478999999975897705311357867750022
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 23332222222221112222111112334320231010122332013--4542133685577775544321003665589
Q gi|254781112|r 121 FSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPDIP 198 (274)
Q Consensus 121 fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~ 198 (274)
||.||+.....++++++.+ +++++||+|++||++.|+.++.++.+. +.+++.+.+.++++++|.+||+|+++.+...
T Consensus 79 ~s~p~~~~~~~~~~~~~~~-~~~~~dL~g~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vD~~i~~~~~ 157 (219)
T smart00062 79 FSDPYYKSGQVILVRKDSP-IKSLEDLKGKKVAVVAGTTGEELLKKLYPEAKIVSYDSQAEALAALKAGRADAAVADAPA 157 (219)
T ss_pred CCCCEECCCEEEEEECCCC-CCCHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEEECHHH
T ss_conf 2455002444799965899-799799679779995798799999972878528985999999999983987999977999
Q ss_pred HHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHC
Q ss_conf 999998458766732623677687707999818998999999999999997985999998767
Q gi|254781112|r 199 FFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYF 261 (274)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~ 261 (274)
+.+++++.+.....+ +........+++++++|++++|++.+|++|++|++||++++|.+|||
T Consensus 158 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l~~l~~~G~l~~I~~kyf 219 (219)
T smart00062 158 LAALVKQHGLPELKI-VGDPLDTPEGYAFAVRKGDPELLDKINKALKELKADGTLKKIYEKWF 219 (219)
T ss_pred HHHHHHHCCCCCEEE-ECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHCCC
T ss_conf 999998489998378-34677776419999959999999999999999996809999984569
No 8
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=100.00 E-value=4e-41 Score=273.99 Aligned_cols=215 Identities=35% Similarity=0.572 Sum_probs=190.7
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHHCC
Q ss_conf 89996289987248704699848898852167899762998555668988988643103221100-00367567542002
Q gi|254781112|r 43 LRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKKYDF 121 (274)
Q Consensus 43 l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~~f 121 (274)
|+||++++||||+|. |++|++.||++|+++++++++|++++|+.+||++++..|++|++|+++ +.++|++|++.+.|
T Consensus 1 l~Vg~~~~~pP~~~~--~~~G~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~f 78 (218)
T cd00134 1 LTVGTAGTYPPFSFR--DANGELTGFDVDLAKAIAKELGVKVKFVEVDWDGLITALKSGKVDLIAAGMTITPERAKQVDF 78 (218)
T ss_pred CEEEECCCCCCCEEE--CCCCCEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCC
T ss_conf 989948998990689--999978883999999999996996699975889999998579977688850258566141455
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 3332222222221112222111112334320231010122332013--45421336855777755443210036655899
Q gi|254781112|r 122 SIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPF 199 (274)
Q Consensus 122 s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~ 199 (274)
|.||+..+..++++++. .+++++||+|++||++.|+.++.++++. ..+++.+++.++++++|.+||+|+++.+...+
T Consensus 79 s~p~~~~~~~~~~~~~~-~~~~~~dl~g~~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~vD~~v~~~~~~ 157 (218)
T cd00134 79 SDPYYKSGQVILVKKGS-PIKSVKDLKGKKVAVQKGSTAEKYLKKALPEAKVVSYDDNAEALAALENGRADAVIVDEIAL 157 (218)
T ss_pred CCCEECCCEEEEEECCC-CCCCHHHHCCCEEEEECCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEEEEECHHHH
T ss_conf 76444157079998689-99998997796267958988999999731575499969999999999859946999769999
Q ss_pred HHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHC
Q ss_conf 99998458766732623677687707999818998999999999999997985999998767
Q gi|254781112|r 200 FNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYF 261 (274)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~ 261 (274)
.+++++.+... ..........+.++++++++++++|++.||++|.+|++||++++|++|||
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l~~l~~~G~~~~I~~kwf 218 (218)
T cd00134 158 AALLKKHPPEL-KIVGPSIDLEPLGFGVAVGKDNKELLDAVNKALKELRADGELKKISKKWF 218 (218)
T ss_pred HHHHHHCCCCC-EEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHCCC
T ss_conf 99998679981-99635667673489999749999999999999999986829999984569
No 9
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein; InterPro: IPR014337 Members of this entry are the extracellular solute-binding proteins of ABC transporters and they closely resemble amino acid transporters. The member from Sinorhizobium meliloti (Rhizobium meliloti) is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes..
Probab=100.00 E-value=1.8e-34 Score=232.84 Aligned_cols=235 Identities=23% Similarity=0.362 Sum_probs=198.7
Q ss_pred HHHHHHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCC-CCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 999841788788589589996289987248704699848898852167899762998-5556689889886431032211
Q gi|254781112|r 27 SYYFVIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLK-VEFFETAVSGLITGLDTNRYDV 105 (274)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~-~~~~~~~~~~~~~~l~~g~~D~ 105 (274)
+........+.+++|.+|||+ .|-+||+|...| |+.+|..+|++++|+++||++ |.+..++|..++++|+.|++|.
T Consensus 20 ~aa~a~~LeelKeQG~~Ria~-ANE~Pf~y~g~D--Gkv~G~~PdvA~aifK~lGi~dVn~~~te~G~lIPGL~AgRfDa 96 (285)
T TIGR02995 20 AAADALTLEELKEQGFVRIAI-ANEVPFAYVGAD--GKVAGAAPDVARAIFKRLGIKDVNASVTEYGALIPGLKAGRFDA 96 (285)
T ss_pred HHHHHHHHHHHHCCCEEEEEE-CCCCCCCCCCCC--CCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHH
T ss_conf 547552157552353047740-067864002688--53136855789999985481100000356403145410102568
Q ss_pred CH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC---CCCEEEECCCHHHHHHHCCCC---CCEEECCH
Q ss_conf 00-00367567542002333222222222111222-211111233---432023101012233201345---42133685
Q gi|254781112|r 106 LV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQ-DIRSFKDLT---DKTVAQILGTDLSRFAKELKS---HLVFSHNF 177 (274)
Q Consensus 106 ~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~-~~~~~~dL~---g~~V~~~~g~~~~~~l~~~~~---~~~~~~~~ 177 (274)
+. ++.++|||++.+.||+|.+.....|+++|+++ .+.+.+|+. ..+|+++.|++..+|+++.+. +++.+++.
T Consensus 97 iaAg~~i~PeRCkqVaft~P~~~~~eallvkKGNPk~L~sY~DiAknP~~K~a~~~G~~e~~~ar~~GVk~eqi~~vPd~ 176 (285)
T TIGR02995 97 IAAGLFIKPERCKQVAFTEPILSLAEALLVKKGNPKELKSYKDIAKNPEVKVAVVAGAVEVKYAREAGVKEEQIVVVPDT 176 (285)
T ss_pred HHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEECCCCHHHHHHHHCCCCCCEEEEECCC
T ss_conf 86115788566646440688644755211258788887752020068231276124723789998658986607882487
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC--CCEEECCC-----CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
Q ss_conf 577775544321003665589999998458766--73262367-----76877079998189989999999999999979
Q gi|254781112|r 178 EQSLQLLLSKRTDATMIPDIPFFNFLERRPHDG--NLFKIADR-----MKDNSAVAFMMRKGNNKLTRSINEILCAIHLD 250 (274)
Q Consensus 178 ~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~ 250 (274)
+..+++|.+||+|++....+++.....+....+ ......++ |..-..=+++||++|.+|++.||..|.++++|
T Consensus 177 ~~~l~~vq~~RaDay~~t~Lt~~~La~K~gd~nVE~~~pfvdPvvkdaPv~i~ygg~AFRpeDkeLRDafn~~L~k~~~s 256 (285)
T TIGR02995 177 ASALKAVQDKRADAYAATELTVKDLAKKAGDANVEVLAPFVDPVVKDAPVRINYGGLAFRPEDKELRDAFNVELAKLKES 256 (285)
T ss_pred HHHHHHHHHHCCCEECCCCCCHHHHHHHCCCCCCEECCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 16788877403422003323478898533897620004321531058873411672011666677787998999986246
Q ss_pred CHHHHHHHHH-CCCC
Q ss_conf 8599999876-7888
Q gi|254781112|r 251 GTYKKIFDRY-FDKN 264 (274)
Q Consensus 251 G~~~~I~~kw-~g~d 264 (274)
++|.+|+.+| |.+.
T Consensus 257 ~e~~Ki~apyGfs~~ 271 (285)
T TIGR02995 257 DEFKKIVAPYGFSKK 271 (285)
T ss_pred CCCHHHHCCCCCCHH
T ss_conf 540112213688888
No 10
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=5.7e-33 Score=223.59 Aligned_cols=223 Identities=16% Similarity=0.207 Sum_probs=192.0
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCHHCCCCHH
Q ss_conf 78858958999628998724870469984889885216789976299855566-89889886431032211000036756
Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLVNVAITPE 114 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~t~e 114 (274)
..+++++++|+++++||||+|. |.+|++.|+.+|+++.|..++|+++++++ .+|.+....+++|++|++..+.++++
T Consensus 297 WL~~hP~irv~~~~~~aP~sf~--D~~G~~~Gi~aD~L~lIs~rtGL~Fe~v~~~~~~~~~~~l~~g~~D~l~~~~~s~~ 374 (1197)
T PRK09959 297 WIKQHPDLKVLENPYSPPYSMT--DENGSVRGVMGDILNIITLQTGLNFSPITVSHNIHAGTQLNPGGWDILPGAIYSED 374 (1197)
T ss_pred HHHHCCCEEEEECCCCCCEEEE--CCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCHHCCCCCCCCC
T ss_conf 9997897599717998994578--88997643279999999998796689983698799999987698122032357854
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC--CCCCCEEECCHHHHHHHHHHHHHHCC
Q ss_conf 7542002333222222222111222211111233432023101012233201--34542133685577775544321003
Q gi|254781112|r 115 RQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE--LKSHLVFSHNFEQSLQLLLSKRTDAT 192 (274)
Q Consensus 115 R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~grvD~~ 192 (274)
|++.+.||.||...+.++++|++.....+++ +|+||++..|+....++++ ++.+++.+++..+++++|.+|++|++
T Consensus 375 r~~~l~fT~py~~~p~ViV~r~~~~~~~~l~--~gkrvai~~~~~~~~~l~~~yP~i~~v~v~s~~~al~~v~~G~aDa~ 452 (1197)
T PRK09959 375 RENNVLFAEAFITTPYVFVMQKAPDSEQTLK--KGMKVAIPYYYELHSQLKEMYPEVEWIKVDNASAAFHKVKEGELDAL 452 (1197)
T ss_pred CCCCCEECCCCCCCCEEEEEECCCCCCCCHH--CCCEEEECCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEE
T ss_conf 4346554132356875999963786301142--19889991785068999986898349980999999999977887667
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf 665589999998458766732623677687707999818998999999999999997985999998767888
Q gi|254781112|r 193 MIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274)
+.+...+.+++.+....... ........+..++|++++++|+|+..+|++|..|... |+++|.+||.+..
T Consensus 453 v~~l~~a~y~i~~~~~~~L~-~~~~~~~~~~~lafaV~~d~peL~sILnKaL~sIpp~-E~~~I~~rW~~~~ 522 (1197)
T PRK09959 453 VATQLNSRYMIDHYYPNELY-HFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPPS-EVLRLTEKWIKMP 522 (1197)
T ss_pred EEHHHHHHHHHHHHCCCCCE-EEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHH-HHHHHHHHHCCCC
T ss_conf 42447789999874566504-8741587763269998799889999999999839999-9999998530467
No 11
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-31 Score=213.21 Aligned_cols=227 Identities=33% Similarity=0.524 Sum_probs=187.1
Q ss_pred HHHHHCCCEEEEECCCC-CCEEEEEECCC-CCEEEEEEEEHHHHHHHCCCC--CCCCCCCHHHHHHHHHCCCCCCCH-HC
Q ss_conf 87885895899962899-87248704699-848898852167899762998--555668988988643103221100-00
Q gi|254781112|r 35 FRTEDQSALRVGTDGIY-PPHSFHAQDGR-GELTGFDIDLIKEVAHRLNLK--VEFFETAVSGLITGLDTNRYDVLV-NV 109 (274)
Q Consensus 35 ~~~~~~~~l~v~~~~~~-pP~~~~~~d~~-g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~~~~l~~g~~D~~~-~~ 109 (274)
..+...+.++|++...+ +||+|.. .. |++.||++|+++++++.++.. ++++..+|..+++.+++|++|+++ ++
T Consensus 28 ~~~~~~~~~~v~~~~~~~~p~~~~~--~~~~~~~G~dvdl~~~ia~~l~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 105 (275)
T COG0834 28 DKIKARGKLRVGTEATYAPPFEFLD--AKGGKLVGFDVDLAKAIAKRLGGDKKVEFVPVAWDGLIPALKAGKVDIIIAGM 105 (275)
T ss_pred HHHHHCCEEEEEECCCCCCCCEEEC--CCCCEEEEEHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEECC
T ss_conf 6664477599997268889841023--88870676529999999998467742488506887763898779988898567
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEECCCH--HHHHHHCC--CCCCEEECCHHHHHHHH
Q ss_conf 3675675420023332222222221112222-1111123343202310101--22332013--45421336855777755
Q gi|254781112|r 110 AITPERQKKYDFSIPYIAHRVLLVVRSDQQD-IRSFKDLTDKTVAQILGTD--LSRFAKEL--KSHLVFSHNFEQSLQLL 184 (274)
Q Consensus 110 ~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~-~~~~~dL~g~~V~~~~g~~--~~~~l~~~--~~~~~~~~~~~~~~~~l 184 (274)
++|++|.+.+.||.||+..+..++++++... +++++||+|++||+..|+. ........ ..+++.+++..+++++|
T Consensus 106 ~~t~~r~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~DL~gk~v~v~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 185 (275)
T COG0834 106 TITPERKKKVDFSDPYYYSGQVLLVKKDSDIGIKSLEDLKGKKVGVQLGTTDEAEEKAKKPGPNAKIVAYDSNAEALLAL 185 (275)
T ss_pred CCCHHHHHCCCCCCCEEECCEEEEEECCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
T ss_conf 36877752005677736546589997688545589889589769996684588887764046774499818889999999
Q ss_pred HHHHHHCCCCCHHHHHHH--HHHCCCCCCCEEECCCCCC-CCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 443210036655899999--9845876673262367768-77079998189-9899999999999999798599999876
Q gi|254781112|r 185 LSKRTDATMIPDIPFFNF--LERRPHDGNLFKIADRMKD-NSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274)
Q Consensus 185 ~~grvD~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274)
.+||+|+++.+...+.++ ..+.+.. ......... ..+++++++++ +.+|++.+|++|.+++++|++++|++||
T Consensus 186 ~~Gr~Da~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l~~l~~~G~~~~i~~kw 262 (275)
T COG0834 186 KNGRADAVVSDSAVLAGLKLLKKNPGL---YVLLVFPGLSVEYLGIALRKGDDPELLEAVNKALKELKADGTLQKISDKW 262 (275)
T ss_pred HCCCCCEEEECHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 849988997068887666653015565---32114556654320001246855999999999999998197099999986
Q ss_pred CCCCCC
Q ss_conf 788877
Q gi|254781112|r 261 FDKNII 266 (274)
Q Consensus 261 ~g~d~~ 266 (274)
|+.+..
T Consensus 263 ~~~~~~ 268 (275)
T COG0834 263 FGPDDY 268 (275)
T ss_pred CCCCCC
T ss_conf 685433
No 12
>PRK10859 putative transglycosylase; Provisional
Probab=99.97 E-value=4.2e-31 Score=212.02 Aligned_cols=222 Identities=22% Similarity=0.318 Sum_probs=190.5
Q ss_pred HHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCC-HHCCCC
Q ss_conf 8788589589996289987248704699848898852167899762998555668-98898864310322110-000367
Q gi|254781112|r 35 FRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVL-VNVAIT 112 (274)
Q Consensus 35 ~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~-~~~~~t 112 (274)
.+++++|+|||++..+ |-+|+.. .|++.||++||++..++.+|+++++++. +.+.+++.|++|+.|++ +|+++|
T Consensus 37 ~~I~~rG~LrV~T~~s--pttYy~~--~~~~~GFEYELak~FA~~LGV~L~i~~~~~~~el~~~L~~G~~DiaAAgLt~t 112 (507)
T PRK10859 37 AAIQARGELRVSTIHS--PLTYSTI--NGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYN 112 (507)
T ss_pred HHHHHCCEEEEEEECC--CCEEEEC--CCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 9999789689999758--9659941--99647799999999999809917999749999999998679988895578778
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCC------C--CEEECCHHHHHHHH
Q ss_conf 567542002333222222222111222211111233432023101012233201345------4--21336855777755
Q gi|254781112|r 113 PERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKS------H--LVFSHNFEQSLQLL 184 (274)
Q Consensus 113 ~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~------~--~~~~~~~~~~~~~l 184 (274)
++|.+.+.|+.||+..+..+|.|++..+.++++||.|++|.+..|+.+.+.+++.+. . ...-.+.++.++++
T Consensus 113 ~~R~~~~~~~p~Y~~v~q~LVyr~g~~rP~~l~DL~G~~I~V~~gSsy~e~L~~Lk~~~~P~L~w~~~~~~~teeLL~~V 192 (507)
T PRK10859 113 SERVKNYQPGPTYYSVSQQLVYRVGQYRPRTLGDLTGEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELLEQV 192 (507)
T ss_pred HHHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
T ss_conf 53674043568650300399995899898897783798699817975999999988534897159955899999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC-HHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 4432100366558999999845876673262367768770799981899-899999999999999798599999876788
Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN-NKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
.+|++|++++|...+.-...-.|.. .+......+.++++++++++ ..|...+++.+.+++++|++.+|.+||||.
T Consensus 193 ~~g~IdyTVaDS~~~~l~qr~~P~L----~vaf~l~~~~~iaWa~~k~~d~sL~~al~~ff~~~~~~g~l~~L~erYfgh 268 (507)
T PRK10859 193 IEGKLDYTIADSVAISLFQRVHPEL----AVALDVTDEQPVTWFSPLDDDNTLSAALLDFFNEMNEDGTLARLEEKYLGH 268 (507)
T ss_pred HCCCCCEEEECCHHHHHHHHHCCCH----HCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 7598776885548899877648440----122456887513788458997899999999999850484899999998455
Q ss_pred C
Q ss_conf 8
Q gi|254781112|r 264 N 264 (274)
Q Consensus 264 d 264 (274)
-
T Consensus 269 ~ 269 (507)
T PRK10859 269 G 269 (507)
T ss_pred C
T ss_conf 2
No 13
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.94 E-value=1.3e-25 Score=178.07 Aligned_cols=223 Identities=14% Similarity=0.179 Sum_probs=178.9
Q ss_pred HHHCCCEEEEE-CCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCHH-CCCCH
Q ss_conf 88589589996-289987248704699848898852167899762998555668-9889886431032211000-03675
Q gi|254781112|r 37 TEDQSALRVGT-DGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLVN-VAITP 113 (274)
Q Consensus 37 ~~~~~~l~v~~-~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~~-~~~t~ 113 (274)
-.++++|+||+ .++||||.+. ++.+.++|+.+|++..|++.+|++++++.. +++..+++|++|++|++.+ ...++
T Consensus 52 L~~~~~l~vgv~~pd~~Pf~~~--~~~~~yeGI~ADYl~li~~~L~~~i~v~~y~~r~~al~AL~~GeIDl~~~~~~~~~ 129 (1197)
T PRK09959 52 LASKKNLVIAVHKSQTATLLHT--DSQQRVRGINADYLNLLKRALNIKLTLREYADHQKAMDALEEGEVDIVLSHLVASP 129 (1197)
T ss_pred HHHCCEEEEEEECCCCCCEEEE--CCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEECCCCCCCC
T ss_conf 9738858997106889996772--79986468479999999998689879995699999999997599756345444576
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC--CCCCCEEECCHHHHHHHHHHHHHHC
Q ss_conf 67542002333222222222111222211111233432023101012233201--3454213368557777554432100
Q gi|254781112|r 114 ERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE--LKSHLVFSHNFEQSLQLLLSKRTDA 191 (274)
Q Consensus 114 eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~grvD~ 191 (274)
.++..+.+|.||..+..+++++.+.. .....+.++.+|+.+.++.....+++ +..+++.|++..+++.++..|++|+
T Consensus 130 ~~~~~~~~s~p~~~~~p~~v~~~~~~-~~~~~~~~~~~va~v~~y~~~~~i~~~yP~a~i~~~~s~~~Al~AVa~G~aD~ 208 (1197)
T PRK09959 130 PLNDDIAATKPLIITFPALVTTLHDS-MRPLTSSKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGQNDY 208 (1197)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCC-CCCCCCCCCEEEEEECCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCE
T ss_conf 42346533685323675589973333-58765677527999578898799998599666996689999999997799888
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC-CC
Q ss_conf 36655899999984587667326236776877079998189989999999999999979859999987678-88
Q gi|254781112|r 192 TMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFD-KN 264 (274)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g-~d 264 (274)
++++..++.+++.+.......+. ........+..|++++++..|.+.+|++|+.+... .-.+|.++|++ -+
T Consensus 209 ~igd~~s~~~li~~~~~~~l~~~-~~~~~~~~~~~f~~~~~~~~L~~~in~~L~~i~~~-~~~~i~~rW~~~~~ 280 (1197)
T PRK09959 209 FIGSNIITSSMISRYFTHSLNVV-KYYNSPRQYNFFLTRKESVILNEVLNRFVDALTNE-VRYEVSQNWLDTGN 280 (1197)
T ss_pred EEECHHHHHHHHHHHCCCCEEEE-ECCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHH-HHHHHHHHCCCCCC
T ss_conf 96029999999974402680352-12457764415787887578999999999837966-79999972367798
No 14
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=3.2e-23 Score=163.28 Aligned_cols=222 Identities=22% Similarity=0.315 Sum_probs=187.3
Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCH-HHHHHHHHCCCCCCCH-HCCC
Q ss_conf 8878858958999628998724870469984889885216789976299855566898-8988643103221100-0036
Q gi|254781112|r 34 PFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAV-SGLITGLDTNRYDVLV-NVAI 111 (274)
Q Consensus 34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~-~~~~~~l~~g~~D~~~-~~~~ 111 (274)
-+.++..|+|+|++..+ |.+|... +|.+.|+++|++++.++.+|+++++++.+- ++++.+|++|+.|+++ |..+
T Consensus 16 l~~Iq~rGvLrV~tins--p~sy~~~--~~~p~G~eYelak~Fa~yLgV~Lki~~~~n~dqLf~aL~ng~~DL~Aagl~~ 91 (473)
T COG4623 16 LAAIQARGVLRVSTINS--PLSYFED--KGGPTGLEYELAKAFADYLGVKLKIIPADNIDQLFDALDNGNADLAAAGLLY 91 (473)
T ss_pred HHHHHHCCEEEEEEECC--CCCEECC--CCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCEECCCCCC
T ss_conf 89998668079984058--6500003--7986535599999999985976899866778889999857993324265667
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCC-----C---CCEEECCHHHHHHH
Q ss_conf 756754200233322222222211122221111123343202310101223320134-----5---42133685577775
Q gi|254781112|r 112 TPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELK-----S---HLVFSHNFEQSLQL 183 (274)
Q Consensus 112 t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~-----~---~~~~~~~~~~~~~~ 183 (274)
.++|.+.+.....|+..++.++.|++..+.+++++|+|++|-+..|+...+-++..+ . ++-.....++.+.+
T Consensus 92 ~~~~l~~~~~gP~y~svs~qlVyRkG~~Rp~~l~~L~g~~i~v~~gs~~~~~l~~lk~~kyP~l~~k~d~~~~~~dLle~ 171 (473)
T COG4623 92 NSERLKNFQPGPTYYSVSQQLVYRKGQYRPRSLGQLKGRQITVAKGSAHVEDLKLLKETKYPELIWKVDDKLGVEDLLEM 171 (473)
T ss_pred CHHHHCCCCCCCCEECCCHHHHHHCCCCCCCCHHHCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHH
T ss_conf 96674046788720022588876528878788887367556406996888999999873163443020221269999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 5443210036655899999984587667326236776877079998189-989999999999999979859999987678
Q gi|254781112|r 184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKKIFDRYFD 262 (274)
Q Consensus 184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~I~~kw~g 262 (274)
+..|++|+.+.+...+..+.+-.|... +........+.++.++.+ +..|...++..+.+++++|-+++|.+||+|
T Consensus 172 v~~Gkldytiads~~is~~q~i~P~la----Vafd~tde~~v~Wy~~~~dd~tL~a~ll~F~~~~~e~g~larleeky~g 247 (473)
T COG4623 172 VAEGKLDYTIADSVEISLFQRVHPELA----VAFDLTDEQPVAWYLPRDDDSTLSAALLDFLNEAKEDGLLARLEEKYLG 247 (473)
T ss_pred HHCCCCCEEEECCHHHHHHHHHCCCCE----EEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf 964776615516188898988572221----3220135667346605896688999999999873052078999999724
Q ss_pred C
Q ss_conf 8
Q gi|254781112|r 263 K 263 (274)
Q Consensus 263 ~ 263 (274)
+
T Consensus 248 H 248 (473)
T COG4623 248 H 248 (473)
T ss_pred C
T ss_conf 4
No 15
>KOG1052 consensus
Probab=99.57 E-value=8.1e-14 Score=105.14 Aligned_cols=226 Identities=25% Similarity=0.358 Sum_probs=156.9
Q ss_pred CCCEEEEECCCCCCEEEEEEC-----CCCCEEEEEEEEHHHHHHHCCCCCCCCCC-----------CHHHHHHHHHCCCC
Q ss_conf 895899962899872487046-----99848898852167899762998555668-----------98898864310322
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQD-----GRGELTGFDIDLIKEVAHRLNLKVEFFET-----------AVSGLITGLDTNRY 103 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d-----~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-----------~~~~~~~~l~~g~~ 103 (274)
..+++|++-.. +||.....+ ++....||++|+++++++.++++++++.+ .|++++..|.+|++
T Consensus 215 ~~~l~v~~~~~-~P~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~~~~~~g~~~~~g~~~g~v~~l~~~~a 293 (656)
T KOG1052 215 GKPLRVGVVTE-PPFVDLVEDLAILNGNDRIEGFEIDLLQALAKRLNFSYEIIFVPDGSGSRDPNGNWDGLVGQLVDGEA 293 (656)
T ss_pred CCEEEEEEECC-CCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCE
T ss_conf 95379987715-89525630433457776401260999999998769758999625788886888876789999971813
Q ss_pred CCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC-------------------------------------------
Q ss_conf 1100003675675420023332222222221112222-------------------------------------------
Q gi|254781112|r 104 DVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQD------------------------------------------- 140 (274)
Q Consensus 104 D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~------------------------------------------- 140 (274)
|+.++++++++|++.++||.||+.....+++++....
T Consensus 294 dvg~~~tit~~R~~~vdfT~p~~~~~~~i~~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (656)
T KOG1052 294 DVGADITITPERSKYVDFTIPYLQFGIVIIVRKPDSRSKLWNFLAPFSPEVWLLILASLLLVGLLLWILERLSPYELPPR 373 (656)
T ss_pred EEEECEEECCCHHHCEEECCEEEECCEEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 00103176002030053213287545799998267420177874667189999999999999999987753044113543
Q ss_pred --------------------------------------------------------------------CCCCCCCC---C
Q ss_conf --------------------------------------------------------------------11111233---4
Q gi|254781112|r 141 --------------------------------------------------------------------IRSFKDLT---D 149 (274)
Q Consensus 141 --------------------------------------------------------------------~~~~~dL~---g 149 (274)
+++++||. +
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~~~~~~i~~~~dL~~~~~ 453 (656)
T KOG1052 374 QIVTSLFSLLNCLWLTVGSLLQQGSDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVPRLRSPIDSLDDLADQSN 453 (656)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHCC
T ss_conf 23121123667789988765512565466307799999999999999998755732301451567887357999987508
Q ss_pred CCEEEECCCHHHHHHHCC-------CC-CCEEECCHHHHHHHHHHHH---HHCCCCCHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 320231010122332013-------45-4213368557777554432---100366558999999845876673262367
Q gi|254781112|r 150 KTVAQILGTDLSRFAKEL-------KS-HLVFSHNFEQSLQLLLSKR---TDATMIPDIPFFNFLERRPHDGNLFKIADR 218 (274)
Q Consensus 150 ~~V~~~~g~~~~~~l~~~-------~~-~~~~~~~~~~~~~~l~~gr---vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (274)
..+|...|+....++++. .. ..+.+.+.++....+.+|. +. ++.+.....++..... ...+.....
T Consensus 454 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~--~c~~~~v~~ 530 (656)
T KOG1052 454 IPYGTQRGSFTRIYLEESEDMWAFKVSQRSVPLASPEEGVERVRKGPSGGYA-FASDELYLAYLFLRDE--ICDLTEVGE 530 (656)
T ss_pred CCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEE-EEECHHHHHHHHHHCC--CCCEEEECC
T ss_conf 7710233605678776527765332146554568999999999669987679-9941377999986236--862488066
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 7687707999818998999999999999997985999998767888775689877
Q gi|254781112|r 219 MKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNIISSVPGCS 273 (274)
Q Consensus 219 ~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~~~~~~~~ 273 (274)
.....+++ +++++++ |+..++.+|.++.+.|.++++.+||+-..-- .|.|+
T Consensus 531 ~~~~~~~~-~~~~~Sp-l~~~is~~Il~l~e~g~l~~~~~kw~~~~~~--~~~~~ 581 (656)
T KOG1052 531 PFLYKGYG-AFPKGSP-LRSLISRAILKLQETGILQKLKRKWFSKKPC--LPKCS 581 (656)
T ss_pred CCCCCCEE-EECCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCC
T ss_conf 45657645-7618983-4788749999856517999999998525776--76555
No 16
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=99.52 E-value=1.8e-13 Score=103.06 Aligned_cols=207 Identities=18% Similarity=0.237 Sum_probs=132.5
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH-H-CCCCHHHH
Q ss_conf 8958999628998724870469984889885216789976299855566-8988988643103221100-0-03675675
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV-N-VAITPERQ 116 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~-~-~~~t~eR~ 116 (274)
..+|++|+-+...|-.... ++ --+.+.+.+.+|.+++++. .++...++++.+|++|++. + .++-.-.
T Consensus 26 p~~l~~gv~P~~~~~~~~~-----~~----~Pl~~yL~~~lg~~Ve~~~~~~y~~~~eal~~g~~Dia~~~p~~yv~a~- 95 (288)
T TIGR03431 26 PKELNFGIIPTENASDLKQ-----RW----EPLADYLSKKLGVKVKLFFATDYAGVIEGMRFGKVDIAWYGPSSYAEAY- 95 (288)
T ss_pred CCEEEEEEECCCCHHHHHH-----HH----HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEEECCHHHHHHH-
T ss_conf 8368999806999999999-----99----9999999998789789996899999999998598309998847889986-
Q ss_pred HHHCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCEEEEC-----CCHHH-HHH-HCCCC-------CCEE
Q ss_conf 4200233322---------222222211122221111123343202310-----10122-332-01345-------4213
Q gi|254781112|r 117 KKYDFSIPYI---------AHRVLLVVRSDQQDIRSFKDLTDKTVAQIL-----GTDLS-RFA-KELKS-------HLVF 173 (274)
Q Consensus 117 ~~~~fs~p~~---------~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~-----g~~~~-~~l-~~~~~-------~~~~ 173 (274)
+... ..|+. .....+++|+|+ .+++++||+|++|+... |+... ..+ ++.+. ++..
T Consensus 96 ~~~~-~~~la~~~~~~g~~~y~s~iivr~Ds-~i~sl~DLkGk~iaf~~~~StSG~l~P~~~L~~~~g~~~~~~f~~v~~ 173 (288)
T TIGR03431 96 QKAN-AEAFAIEVNADGSTGYYSVLIVKKDS-PIKSLEDLKGKTFGFVDPNSTSGFLVPSYYLFKKNGIKPKEYFKKVTF 173 (288)
T ss_pred HCCC-CEEEEEEECCCCCCCEEEEEEEECCC-CCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEE
T ss_conf 5259-74889985158886457999998999-888778957987660287411113999999998659972545531331
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCCCEEECC--CCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf 368557777554432100366558999999845-87667326236--776877079998189-98999999999999997
Q gi|254781112|r 174 SHNFEQSLQLLLSKRTDATMIPDIPFFNFLERR-PHDGNLFKIAD--RMKDNSAVAFMMRKG-NNKLTRSINEILCAIHL 249 (274)
Q Consensus 174 ~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~ 249 (274)
..+++.++..+.+|++|+..........+..+. +.....+++.. ++.... .++++++ ++++++.|-++|-.|.+
T Consensus 174 ~gshd~~~~aV~~G~~Dag~~~~~~~~~~~~~~~~~~~~~lrvi~~S~~iP~~--~~~v~~~l~~~~~~~i~~all~l~~ 251 (288)
T TIGR03431 174 SGSHEAAILAVANGTVDAATTNDENLDRMIRKGQPDAMEDLRIIWKSPLIPNG--PIVYRKDLPADLKAKIRKAFLNYHK 251 (288)
T ss_pred CCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCCCCCC--CEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 57878999999859932998338889999974796303136999867888877--1899699999999999999980786
Q ss_pred CCHH-HHHHHHH
Q ss_conf 9859-9999876
Q gi|254781112|r 250 DGTY-KKIFDRY 260 (274)
Q Consensus 250 ~G~~-~~I~~kw 260 (274)
+.+- ..+.++|
T Consensus 252 ~d~~~~~~l~~~ 263 (288)
T TIGR03431 252 TDKACFEKIAGG 263 (288)
T ss_pred CCHHHHHHHHCC
T ss_conf 787689987425
No 17
>KOG1053 consensus
Probab=99.50 E-value=2.9e-14 Score=107.91 Aligned_cols=196 Identities=18% Similarity=0.228 Sum_probs=140.0
Q ss_pred EEEEEEEHHHHHHHCCCCCCC-----------CCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 898852167899762998555-----------668988988643103221100-00367567542002333222222222
Q gi|254781112|r 66 TGFDIDLIKEVAHRLNLKVEF-----------FETAVSGLITGLDTNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLV 133 (274)
Q Consensus 66 ~G~~~dl~~~i~~~lg~~~~~-----------~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~ 133 (274)
.||.+||++.+++.+|+.+.. +.--|++++.+|..+++|++. +.++++||.+.++||.|+..++..++
T Consensus 466 kGfCIDiLkKlA~~v~FtYDLYlVtnGKhGkk~ng~WnGmIGev~~~rA~MAVgSltINeeRSevVDFSvPFveTgIsVm 545 (1258)
T KOG1053 466 KGFCIDILKKLARDVKFTYDLYLVTNGKHGKKINGVWNGMIGEVVYQRADMAVGSLTINEERSEVVDFSVPFVETGISVM 545 (1258)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHEEEEEEEECHHHHCCCCCCCCCCCCCEEEE
T ss_conf 05569999998865386368999527754530057310268998752001366556753123120022244300461799
Q ss_pred CCCCCCC----------------------------------CCCC-----CCCCCCC-----------------------
Q ss_conf 1112222----------------------------------1111-----1233432-----------------------
Q gi|254781112|r 134 VRSDQQD----------------------------------IRSF-----KDLTDKT----------------------- 151 (274)
Q Consensus 134 ~~~~~~~----------------------------------~~~~-----~dL~g~~----------------------- 151 (274)
++..+.. +.+. .--+|++
T Consensus 546 V~rsngtvspsAFLePfs~svWVmmFVm~livaai~vFlFEy~SPvgyn~~l~~gkkpggp~FtigkaiwllwaLvFnns 625 (1258)
T KOG1053 546 VARSNGTVSPSAFLEPFSPSVWVMMFVMCLIVAAITVFLFEYFSPVGYNRNLANGKKPGGPSFTIGKAIWLLWALVFNNS 625 (1258)
T ss_pred EEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCC
T ss_conf 98127865843530776457999999999999999998874207555364446777889863012067999999982787
Q ss_pred EE--EECCCHH----------------------------HHHHHC-----------CCC---------------------
Q ss_conf 02--3101012----------------------------233201-----------345---------------------
Q gi|254781112|r 152 VA--QILGTDL----------------------------SRFAKE-----------LKS--------------------- 169 (274)
Q Consensus 152 V~--~~~g~~~----------------------------~~~l~~-----------~~~--------------------- 169 (274)
|. ..+|++. +++..+ +..
T Consensus 626 Vpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~~~d~vSGlsD~KfqrP~dq~PpFRFGTVpngSTE~niR~ 705 (1258)
T KOG1053 626 VPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYYDTVSGLSDPKFQRPHDQYPPFRFGTVPNGSTERNIRS 705 (1258)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 68889973188999999999999999998877888876330121204667401268644589841004789844666775
Q ss_pred ---------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf ---------42133685577775544321003665589999998458766732623677687707999818998999999
Q gi|254781112|r 170 ---------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSI 240 (274)
Q Consensus 170 ---------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~i 240 (274)
......+.++++..|++|+.||++.|..+..|..-+..+......-.+.+....+|+++++|+++ +...|
T Consensus 706 Nyp~MHeYM~kyNq~~v~dal~sLK~gKLDAFIyDaAVLnY~agkDegCKLvTIGsgKvFAttGYGIal~k~Sp-wkr~I 784 (1258)
T KOG1053 706 NYPEMHEYMVKYNQPGVEDALESLKNGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALPKNSP-WKRQI 784 (1258)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCEEEECCCCCC-CHHHH
T ss_conf 50999999998566760889998761660167788888777633577964898327735654020340389995-04467
Q ss_pred HHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 9999999979859999987678
Q gi|254781112|r 241 NEILCAIHLDGTYKKIFDRYFD 262 (274)
Q Consensus 241 n~~l~~l~~~G~~~~I~~kw~g 262 (274)
|.+|-+...+|+++++..+|+-
T Consensus 785 dlallQy~gdGeme~Le~~Wlt 806 (1258)
T KOG1053 785 DLALLQYLGDGEMEMLETLWLT 806 (1258)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
T ss_conf 8999987166569999877730
No 18
>TIGR01098 3A0109s03R phosphonate ABC transporter, periplasmic phosphonate-binding protein; InterPro: IPR005770 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0030288 outer membrane-bounded periplasmic space.
Probab=99.38 E-value=1.3e-12 Score=97.76 Aligned_cols=195 Identities=22% Similarity=0.238 Sum_probs=132.3
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH--HCCCC-H-H
Q ss_conf 8958999628998724870469984889885216789976299855566-8988988643103221100--00367-5-6
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV--NVAIT-P-E 114 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~--~~~~t-~-e 114 (274)
.++|++|+-++--|-... .+.+ -|...+-++||++|++.+ .++..++++++.|++|+.+ +.+|- . .
T Consensus 50 p~~l~~g~~P~e~~~~~~---~~~~------pL~~~Lek~Lg~kV~~~~~~dY~a~IEamr~g~~D~a~~g~~sY~~A~~ 120 (299)
T TIGR01098 50 PKELNFGILPGENASNLA---RRWE------PLKDYLEKKLGIKVELFVATDYSAVIEAMRFGRVDIAWFGPSSYVLAHR 120 (299)
T ss_pred CCEEEEEEECCCCHHHHH---HHHH------HHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCHHHEEEE
T ss_conf 772689984488755777---7668------9999888755886799861683103342326807898347851232200
Q ss_pred HHHHHCCC---------CCCCCCCCCCCCCCCCCCCCCCCC----CCCCCEEEEC-----CCHHH-HHHH-C----CC--
Q ss_conf 75420023---------332222222221112222111112----3343202310-----10122-3320-1----34--
Q gi|254781112|r 115 RQKKYDFS---------IPYIAHRVLLVVRSDQQDIRSFKD----LTDKTVAQIL-----GTDLS-RFAK-E----LK-- 168 (274)
Q Consensus 115 R~~~~~fs---------~p~~~~~~~~~~~~~~~~~~~~~d----L~g~~V~~~~-----g~~~~-~~l~-~----~~-- 168 (274)
|...-.|. ++=-.+...++++++++ |++++| |+||++|..- |+... .++. + ..
T Consensus 121 ~~~~~~~a~~~~~~~~~~g~~~Y~S~~iv~~dS~-i~~~~DlL~~LKGK~~af~Dp~STSG~l~P~~~l~~~~~~~~~~~ 199 (299)
T TIGR01098 121 RANAEAFALTAIRYVSTDGSPGYYSVIIVKADSP-IKSLKDLLKKLKGKTFAFGDPASTSGYLVPRYQLLKEGGLDADKD 199 (299)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCC-CCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 1387012134433116888983489999838999-633899997507975985068875124778899876507898885
Q ss_pred -----CCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC-------------CCCEEECC--CCCCCCCEEEE
Q ss_conf -----54213368557777554432100366558999999845876-------------67326236--77687707999
Q gi|254781112|r 169 -----SHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHD-------------GNLFKIAD--RMKDNSAVAFM 228 (274)
Q Consensus 169 -----~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~--~~~~~~~~~~~ 228 (274)
.+++...++++.+..+.+|++|+++.............+.. ...+++.. +++...+ ++
T Consensus 200 d~~~F~~~~~~G~Hd~~~~~V~nG~vDaA~~~~~~~~~~~~~~~~~~~~~~~~~g~~D~~~~~~vI~~S~~IPndp--~~ 277 (299)
T TIGR01098 200 DDKFFSEVVFSGSHDASILAVANGKVDAATNNSSAIERLKKRGPSDKFKKKVAKGATDLMKKVRVIWKSPLIPNDP--IA 277 (299)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCEEECCCCCCCHHCEEEEEECCCCCCCC--EE
T ss_conf 3452332688431589999988088545765304466565303235651552047767137017875237877875--46
Q ss_pred EECC-CH--HHHHHHHHHHHH
Q ss_conf 8189-98--999999999999
Q gi|254781112|r 229 MRKG-NN--KLTRSINEILCA 246 (274)
Q Consensus 229 ~~k~-~~--~L~~~in~~l~~ 246 (274)
+|++ ++ +|++.|-+++..
T Consensus 278 ~R~~L~~yP~~k~ki~~~F~~ 298 (299)
T TIGR01098 278 VRSDLPPYPELKEKIRDAFLD 298 (299)
T ss_pred EECCCCCCHHHHHHHHHHHHC
T ss_conf 525789667799999999851
No 19
>TIGR02285 TIGR02285 conserved hypothetical protein; InterPro: IPR011972 Members of this family are found in several Proteobacteria, including Pseudomonas putida (strain KT2440), Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown..
Probab=99.36 E-value=1.2e-11 Score=91.70 Aligned_cols=222 Identities=21% Similarity=0.275 Sum_probs=148.5
Q ss_pred CCCEEEEECCCCCCEEEEEECCC------CCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCC-HHCCC
Q ss_conf 89589996289987248704699------848898852167899762-99855566898898864310322110-00036
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGR------GELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVL-VNVAI 111 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~------g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~-~~~~~ 111 (274)
+..|.+.+ .|+|||... |+. -+-.|..-.+..+|-.++ .++.+++.++..|....+++|+--++ .++-.
T Consensus 18 ~e~I~W~~-~D~PPf~I~--~G~Gmmvdi~~grG~~D~~~~~i~r~lP~Y~H~~~~~~~aR~~~~~Q~~~~~~C~~~ll~ 94 (293)
T TIGR02285 18 KEAITWIV-SDLPPFFIF--DGPGMMVDIKKGRGVLDVVLKLIRRKLPEYEHRIVRVSVARSLKMLQQGKAVVCDVNLLK 94 (293)
T ss_pred CCCCEEEE-ECCCCEEEE--ECCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 72111511-147872687--088028973168872033679999836547513899866789999863886021551447
Q ss_pred CHHHHHHHCCC--CCCC-CCCCCCCCCCCCC-CCCCCC-----CCC------CCCEEEECC----CHHHHHHHCCCC---
Q ss_conf 75675420023--3322-2222222111222-211111-----233------432023101----012233201345---
Q gi|254781112|r 112 TPERQKKYDFS--IPYI-AHRVLLVVRSDQQ-DIRSFK-----DLT------DKTVAQILG----TDLSRFAKELKS--- 169 (274)
Q Consensus 112 t~eR~~~~~fs--~p~~-~~~~~~~~~~~~~-~~~~~~-----dL~------g~~V~~~~g----~~~~~~l~~~~~--- 169 (274)
||||++++.|| .|.. ..+..++.++... .+.... ||. +++.+++.| .-.+..+.+.+.
T Consensus 95 TPEReK~~~Fstf~~~~~~~p~glv~~~~~~~~~~~~~~G~~VdL~~Ll~~~~~~~~~~a~RsYg~~ID~~L~~~~~~~~ 174 (293)
T TIGR02285 95 TPEREKFLIFSTFDPTLVVLPVGLVLRKELAAEVRDLADGDDVDLKKLLASKKLRLGVIASRSYGAQIDDILKDKKDKKN 174 (293)
T ss_pred CCCHHHHEECCHHHHHHHHCCCCEEECCCCCCCCCHHCCCCCHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCCC
T ss_conf 86154320001247898647842365222232351120676101788731888644788630115789999973689624
Q ss_pred -CCEEECCHHH-HHHHHHHHHHHCCCCCHHHHHHHHH-------------HCCCCCCCEEECC--CCCCCCCEEEEEECC
Q ss_conf -4213368557-7775544321003665589999998-------------4587667326236--776877079998189
Q gi|254781112|r 170 -HLVFSHNFEQ-SLQLLLSKRTDATMIPDIPFFNFLE-------------RRPHDGNLFKIAD--RMKDNSAVAFMMRKG 232 (274)
Q Consensus 170 -~~~~~~~~~~-~~~~l~~grvD~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~--~~~~~~~~~~~~~k~ 232 (274)
+.+.-....+ .++||..||+++++.=.....||.+ +.......+.... ........+++-+|.
T Consensus 175 ~~~~~n~~~~nGl~~mL~~~R~~~tL~Y~~E~~Yy~~skfGyGsstvsdl~~~~~~~~~~~lpv~g~~~~i~v~vaCpkt 254 (293)
T TIGR02285 175 SRVIGNAASGNGLFKMLEKGRVQYTLAYPPEVVYYEESKFGYGSSTVSDLQKKGALAPLKFLPVAGVAAEISVVVACPKT 254 (293)
T ss_pred CCEECCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 22205553035799997524333031452332444431145551468888724577881264004777677899840888
Q ss_pred --CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf --98999999999999997985999998767888
Q gi|254781112|r 233 --NNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274)
Q Consensus 233 --~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274)
..+.+..||++|.+...++.|.+.+.+|+.-+
T Consensus 255 ~wG~~~~~dId~~L~~~~~~~~~~~~~~rWL~~~ 288 (293)
T TIGR02285 255 EWGRKVVADIDQLLSELKVDPKYEKAVDRWLSLE 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHH
T ss_conf 7789999999999886430411254442048915
No 20
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=7e-12 Score=93.18 Aligned_cols=211 Identities=18% Similarity=0.179 Sum_probs=133.5
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH--HCCCC
Q ss_conf 78858958999628998724870469984889885216789976299855566-8988988643103221100--00367
Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV--NVAIT 112 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~--~~~~t 112 (274)
.....++|++|+.+.--| .+......-+.+.+.+.+|+++++.. .++...++++.+|++|+++ +.++.
T Consensus 30 ~~~~~~~l~~gi~p~e~~---------~~~~~~~~pl~~~L~~~lG~~V~~~~a~dy~~vieal~~g~~D~A~~~~~a~~ 100 (299)
T COG3221 30 AAEDPKELRVGIVPTENP---------TNLIPAWAPLADYLEKELGIPVEFFVATDYAAVIEALRAGQVDIAWLGPSAYV 100 (299)
T ss_pred CCCCCCCEEEEECCCCCH---------HHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 226875359997688886---------87887656699898898699543572576899999985896107741857789
Q ss_pred HHHHHH--H---CCC-CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEEEC-----CCHHH-HHHHCCC-C------CC
Q ss_conf 567542--0---023-3322--222222211122221111123343202310-----10122-3320134-5------42
Q gi|254781112|r 113 PERQKK--Y---DFS-IPYI--AHRVLLVVRSDQQDIRSFKDLTDKTVAQIL-----GTDLS-RFAKELK-S------HL 171 (274)
Q Consensus 113 ~eR~~~--~---~fs-~p~~--~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~-----g~~~~-~~l~~~~-~------~~ 171 (274)
....+. . ..+ .+.. .+...+++++|++ +++++||+|||++... |+... .++...+ . ..
T Consensus 101 ~a~~~~~~~e~~~~~~~~dg~~~Y~S~~i~~~ds~-i~sl~dlkgk~~af~d~~StSG~l~P~~~L~~~g~~d~~~~f~~ 179 (299)
T COG3221 101 EAVDRALAGEPLAQTVQKDGSPGYYSVIIVRADSP-IKSLEDLKGKRFAFGDPDSTSGYLFPLYYLAKEGGIDPDKFFGE 179 (299)
T ss_pred HHHHHCCCCCCEEEEECCCCCCCEEEEEEEECCCC-CCHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCE
T ss_conf 98641245420133212589865178999927997-43378826996763699854124768999998438984654226
Q ss_pred EEE-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC-CCCCEEECC--CCCCCCCEEEEEECC-CHHHHHHHHHHHHH
Q ss_conf 133-6855777755443210036655899999984587-667326236--776877079998189-98999999999999
Q gi|254781112|r 172 VFS-HNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPH-DGNLFKIAD--RMKDNSAVAFMMRKG-NNKLTRSINEILCA 246 (274)
Q Consensus 172 ~~~-~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~k~-~~~L~~~in~~l~~ 246 (274)
+.+ .+++.++.++.+|++|+...............+. ....+.+.. ++.... .++++++ ++++++.+-++|..
T Consensus 180 v~~~G~H~~a~~aV~nG~vDva~~~~~~~~~~~~~~~~~~~~~l~vi~~S~~iP~~--pi~vr~~L~~~~k~kl~~af~~ 257 (299)
T COG3221 180 VIFSGGHDAAVLAVANGQVDVAAVNSSARGLLKKAAPEGVAEKLRVIWKSPLIPND--PIAVRSDLPADLKEKLRDAFLD 257 (299)
T ss_pred EECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCHHHCEEEEECCCCCCC--CEEEECCCCHHHHHHHHHHHHH
T ss_conf 50357079999999748830885228888777640433453342699955898999--7888377999999999999984
Q ss_pred HHHCCHHHHHHH
Q ss_conf 997985999998
Q gi|254781112|r 247 IHLDGTYKKIFD 258 (274)
Q Consensus 247 l~~~G~~~~I~~ 258 (274)
+.++-....|.+
T Consensus 258 l~~~~~~~~l~~ 269 (299)
T COG3221 258 LAKTEDKKILLD 269 (299)
T ss_pred CCCCCCCHHHHH
T ss_conf 374311358897
No 21
>pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
Probab=99.18 E-value=1.9e-10 Score=84.36 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=94.8
Q ss_pred CCCCCCCCCCCCCCCCC---CEEEECCCHHHHHHHCCCC--------------CCEEECCHHHHHHHHHHHH-HHCCCCC
Q ss_conf 11122221111123343---2023101012233201345--------------4213368557777554432-1003665
Q gi|254781112|r 134 VRSDQQDIRSFKDLTDK---TVAQILGTDLSRFAKELKS--------------HLVFSHNFEQSLQLLLSKR-TDATMIP 195 (274)
Q Consensus 134 ~~~~~~~~~~~~dL~g~---~V~~~~g~~~~~~l~~~~~--------------~~~~~~~~~~~~~~l~~gr-vD~~~~~ 195 (274)
+.+-...+++++||... ++|+..++....+.++... ....+.+.+++++.+.+|+ ++|++.+
T Consensus 95 ~~~~~~~I~~i~dL~~~~~~~~g~~~~~~~~~~f~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~~~~A~i~e 174 (270)
T pfam00060 95 VERMQSPIQSLEDLAKQNKIGYGTLRGGSTFEFFKESKNPTYRRMWEYMISFKGEVNVESYEEGVQRVRKGNGLYAFLME 174 (270)
T ss_pred CCCCCCCCCCHHHHHHCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 13347775789999867987311140761677778614306889999987506667778999999998658862899952
Q ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 58999999845876673262367768770799981899899999999999999798599999876788
Q gi|254781112|r 196 DIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
.....++..+.+- .....++.....+++++++|++| +++.+|.+|.+++++|.++++.+||+..
T Consensus 175 ~~~l~~~~~~~~c---~l~~vg~~f~~~~~g~a~~k~Sp-~~~~~s~~il~l~E~G~l~~l~~kW~~~ 238 (270)
T pfam00060 175 SAYLEYEVARDCC---KLTTVGEVFGTKGYGIAFPKGSP-LRDKLSRAILELRESGELQKLENKWWKK 238 (270)
T ss_pred HHHHHHHHHHCCC---CCEEECCCCCCCCEEEEECCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 5889999970487---62780531145754688518993-0999999999987267899999864589
No 22
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=99.17 E-value=9.2e-10 Score=80.06 Aligned_cols=211 Identities=13% Similarity=0.134 Sum_probs=115.9
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCC-HHHHHHHHHCCCCCCCHHCCCCH-
Q ss_conf 8858958999628998724870469984889885216789976-29985556689-88988643103221100003675-
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETA-VSGLITGLDTNRYDVLVNVAITP- 113 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~-~~~~~~~l~~g~~D~~~~~~~t~- 113 (274)
.....+||||......|.... . .. | +. .+. .+.+++|...+ -..++++|..|.+|+.. +..+|
T Consensus 23 ~~~~~~lrIgyq~~~~~~~~~-~-~~----~----~~---ek~~~~~kV~w~~F~~G~~~~eAl~aG~iD~~~-~g~~p~ 88 (314)
T PRK11553 23 ESSPEALRIGYQKGSIGLVLA-K-SH----Q----LL---EKRFPQTKISWVEFPAGPQMLEALNVGSIDLGS-TGDIPP 88 (314)
T ss_pred HCCCCEEEEEECCCCHHHHHH-H-HC----C----HH---HHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEE-ECCHHH
T ss_conf 348975999961774158999-8-52----8----67---661789835899789748999999769975451-158589
Q ss_pred --HHHHHH--CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHH----HHCCCCC---CEE-ECCHHH
Q ss_conf --675420--02--333222222222111222211111233432023101012233----2013454---213-368557
Q gi|254781112|r 114 --ERQKKY--DF--SIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRF----AKELKSH---LVF-SHNFEQ 179 (274)
Q Consensus 114 --eR~~~~--~f--s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~----l~~~~~~---~~~-~~~~~~ 179 (274)
...... .+ ..+.......+++++++ .|++++||+||||++..|+..+.+ +++.+.. +.. .-.+.+
T Consensus 89 i~a~a~G~~~~~va~~~~~~~~~~i~V~~~S-~I~s~aDLkGKkVa~~~Gs~~~~~l~~aL~~aGL~~~DV~~v~l~p~d 167 (314)
T PRK11553 89 IFAQAAGADLVYVGVEPPKPKAEVILVAENS-PIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPAD 167 (314)
T ss_pred HHHHHCCCCEEEEEEECCCCCCEEEEEECCC-CCCCHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCHHHEEEEECCCHH
T ss_conf 9998669986999986378864189984898-778888938998974179737999999999869988991898459388
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEE---CCCHHHHHHHHHHHHHH----HHC-C
Q ss_conf 777554432100366558999999845876673262367768770799981---89989999999999999----979-8
Q gi|254781112|r 180 SLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMR---KGNNKLTRSINEILCAI----HLD-G 251 (274)
Q Consensus 180 ~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~~L~~~in~~l~~l----~~~-G 251 (274)
+..+|.+|+||++...+........+ ... ..+.-.........+.++-+ +++|++...+-+++.+. +++ -
T Consensus 168 ~~aAl~~G~VDA~~~w~P~~~~a~~~-~ga-Rvl~dg~~~~~~~~~~~~~~~fa~~~p~~v~~~l~~l~~a~~w~~~~p~ 245 (314)
T PRK11553 168 ARAAFQQGNVDAWAIWDPYYSAALLQ-GGV-RVLKDGTDLNQTGSFYLAARPYAEKNGAFIQQVLATLSEADALTRSQRA 245 (314)
T ss_pred HHHHHHCCCCCEEEECCHHHHHHHHC-CCC-EEEECCCCCCCCCCEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 99999669978899756789999862-895-8985376667776168861898887999999999999999999997999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 5999998767888
Q gi|254781112|r 252 TYKKIFDRYFDKN 264 (274)
Q Consensus 252 ~~~~I~~kw~g~d 264 (274)
+..+++.+..|.+
T Consensus 246 eaa~i~A~~~gl~ 258 (314)
T PRK11553 246 QSIALLAKTMGLP 258 (314)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999987929
No 23
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb
Probab=99.12 E-value=4.4e-10 Score=82.05 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=91.9
Q ss_pred CCCCCCCCC---CCEEEECCCHHHHHHHCCCC-------------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 111112334---32023101012233201345-------------42133685577775544321003665589999998
Q gi|254781112|r 141 IRSFKDLTD---KTVAQILGTDLSRFAKELKS-------------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLE 204 (274)
Q Consensus 141 ~~~~~dL~g---~~V~~~~g~~~~~~l~~~~~-------------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~ 204 (274)
|++++||.. .+.|++.|+....+.+.... .-..+.+.+++++.+.+|+ .|++.+.....++..
T Consensus 2 I~s~~DL~~q~~i~yGtv~~ss~~~fF~~s~~~~y~~mw~~m~~~~~~~v~~~~eGv~rv~~g~-yAfi~e~~~l~y~~~ 80 (134)
T smart00079 2 ITSVEDLAKQTKIEYGTIRGSSTLAFFKRSGNPEYSRMWNYMSASPSVFVKSYAEGVQRVRVSN-YAFLMESTYLDYELS 80 (134)
T ss_pred CCCHHHHHCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC-CEEECCCHHHHHHHC
T ss_conf 7998998428872016878963899988778658999999986285556677899999998078-235505147899860
Q ss_pred HCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 4587667326236776877079998189989999999999999979859999987678
Q gi|254781112|r 205 RRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFD 262 (274)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g 262 (274)
+ + ..+...+.+....+++++++|++| |++.||.+|.+|+++|.+++|.+|||.
T Consensus 81 ~---~-C~l~~vG~~f~~~~ygia~~kgSp-~~~~is~~Il~l~e~G~l~~l~~kW~~ 133 (134)
T smart00079 81 Q---N-CDLMTVGENFGRKGYGIAFPKGSP-LRDDLSRAILKLSESGELQKLENKWWK 133 (134)
T ss_pred C---C-CCEEEECEEEECCCEEEEECCCCH-HHHHHHHHHHHHHHCCHHHHHHHHHCC
T ss_conf 6---7-874895306641545788339981-499999999998857879999986169
No 24
>KOG1054 consensus
Probab=99.10 E-value=1.5e-10 Score=85.02 Aligned_cols=218 Identities=20% Similarity=0.343 Sum_probs=141.6
Q ss_pred CCCEEEEECCCCCCEEEEEE-----CCCCCEEEEEEEEHHHHHHHCCCCCCCCCC------------C-HHHHHHHHHCC
Q ss_conf 89589996289987248704-----699848898852167899762998555668------------9-88988643103
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQ-----DGRGELTGFDIDLIKEVAHRLNLKVEFFET------------A-VSGLITGLDTN 101 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~-----d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~------------~-~~~~~~~l~~g 101 (274)
..++.|-+.-.- ||..... .++.++.||.+|++.+|++..|+++++... . |++++..|-.|
T Consensus 416 n~tvvvttiL~s-pyvm~kkn~~~~egn~ryEGyCvdLa~~iAkhi~~~Y~l~iv~dgkyGardaD~k~WnGMvGeLv~g 494 (897)
T KOG1054 416 NRTVVVTTILES-PYVMLKKNHEQLEGNERYEGYCVDLAAEIAKHIGIKYKLFIVGDGKYGARDADTKIWNGMVGELVYG 494 (897)
T ss_pred CCEEEEEEECCC-CHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 652899971379-5457775477731776431338999999997507417899923776566688764113346787558
Q ss_pred CCCCC-HHCCCCHHHHHHHCCCCCCCCCCCCCCCCC-CC--CCCCCCCC-------------------------------
Q ss_conf 22110-000367567542002333222222222111-22--22111112-------------------------------
Q gi|254781112|r 102 RYDVL-VNVAITPERQKKYDFSIPYIAHRVLLVVRS-DQ--QDIRSFKD------------------------------- 146 (274)
Q Consensus 102 ~~D~~-~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~-~~--~~~~~~~d------------------------------- 146 (274)
+.|++ +..++|.+|++.++||.|++.....+..++ +. +.+-++-|
T Consensus 495 rAdiavApLTIt~~REeviDFSKPfMslGISIMIKKPqKsk~gVFSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFSPYE 574 (897)
T KOG1054 495 RADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYE 574 (897)
T ss_pred CCCEEEEEEEEEHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHCCEEEEEEEECCCCHH
T ss_conf 43347722364301244642466344427689980766578870562154577899999998735158899874257301
Q ss_pred --------------------------------------------CCCCCEE---------EECCCHH--HHH--------
Q ss_conf --------------------------------------------3343202---------3101012--233--------
Q gi|254781112|r 147 --------------------------------------------LTDKTVA---------QILGTDL--SRF-------- 163 (274)
Q Consensus 147 --------------------------------------------L~g~~V~---------~~~g~~~--~~~-------- 163 (274)
|.|.-+| ++..++. ..+
T Consensus 575 wh~Ee~~rg~~t~~~~~NeFgifNsLWFsLgAFMQQG~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTvErMvs 654 (897)
T KOG1054 575 WHTEEFERGRFTPSDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVS 654 (897)
T ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 00221146887888998621136778999999996577878310366551020555456454450567888886986348
Q ss_pred --------HHCCCC--------------------------------C-CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf --------201345--------------------------------4-21336855777755443210036655899999
Q gi|254781112|r 164 --------AKELKS--------------------------------H-LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNF 202 (274)
Q Consensus 164 --------l~~~~~--------------------------------~-~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~ 202 (274)
+++... + -+.+.+.++++..+...+..+++.-+.+...|
T Consensus 655 PIESaEDLAkQteIaYGt~~~GSTkeFFr~Skiavy~kMW~yM~SaepsVFv~t~aeGv~rVRksKGkyAfLLEsTmNey 734 (897)
T KOG1054 655 PIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMKSAEPSVFVRTTAEGVARVRKSKGKYAFLLESTMNEY 734 (897)
T ss_pred CCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCEEEEHHHHHHHH
T ss_conf 41128887522114344047874688886526799999999975179603654156689998733771675317566566
Q ss_pred HHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHC
Q ss_conf 98458766732623677687707999818998999999999999997985999998767
Q gi|254781112|r 203 LERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYF 261 (274)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~ 261 (274)
..+..... ..++. .-....+|++|-++++ .|+..+|-++-.+.+.|+++++-+||.
T Consensus 735 ~eqRkPCD-TMKVG-gNLds~GYGiATp~Gs-slr~~vNLAvLkL~E~G~LdKLkNKWW 790 (897)
T KOG1054 735 IEQRKPCD-TMKVG-GNLDSKGYGIATPKGS-SLRNAVNLAVLKLNEQGLLDKLKNKWW 790 (897)
T ss_pred HHCCCCCC-CEECC-CCCCCCCEEECCCCCC-CCCCCHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 64369863-10106-6557765010477773-010202124220110243777642002
No 25
>KOG4440 consensus
Probab=99.05 E-value=1.1e-10 Score=85.82 Aligned_cols=192 Identities=15% Similarity=0.240 Sum_probs=132.7
Q ss_pred EEEEEEEHHHHHHHCCCCCCCC--------------------CCCHHHHHHHHHCCCCCCC-HHCCCCHHHHHHHCCCCC
Q ss_conf 8988521678997629985556--------------------6898898864310322110-000367567542002333
Q gi|254781112|r 66 TGFDIDLIKEVAHRLNLKVEFF--------------------ETAVSGLITGLDTNRYDVL-VNVAITPERQKKYDFSIP 124 (274)
Q Consensus 66 ~G~~~dl~~~i~~~lg~~~~~~--------------------~~~~~~~~~~l~~g~~D~~-~~~~~t~eR~~~~~fs~p 124 (274)
.||.+|++-.++..++..++.. ...|++++..|.+|+.|++ .+++++|||++++.||.|
T Consensus 463 ~G~cIDLLi~Ls~~~Nftyd~~l~~dg~fg~~~~vnnsseT~~kew~G~iGEL~~~~ADMivaplTINpERa~yieFskP 542 (993)
T KOG4440 463 YGFCIDLLIKLSRTMNFTYDVHLVADGKFGTQERVNNSSETNKKEWNGMIGELLSGQADMIVAPLTINPERAQYIEFSKP 542 (993)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEECCCCCCCCEEHHHHHHHHCCCCCEEEECEEECHHHHHHEECCCC
T ss_conf 68899999999886256366888644656516764045532351411112444078555376110137224544222675
Q ss_pred CCCCCCCCCCCCCCC----------------------------------------CCCCCCC------------------
Q ss_conf 222222222111222----------------------------------------2111112------------------
Q gi|254781112|r 125 YIAHRVLLVVRSDQQ----------------------------------------DIRSFKD------------------ 146 (274)
Q Consensus 125 ~~~~~~~~~~~~~~~----------------------------------------~~~~~~d------------------ 146 (274)
+...+.-++.++... +++ .+|
T Consensus 543 fkYqGitILeKk~~r~Stl~SFlQPfqstLW~lv~~SVhvVal~lYlLDrfSPFgRFk-~~ds~~~ee~alnlssAmWF~ 621 (993)
T KOG4440 543 FKYQGITILEKKEIRRSTLDSFLQPFQSTLWLLVGLSVHVVALMLYLLDRFSPFGRFK-VNDSEEEEEDALNLSSAMWFS 621 (993)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE-ECCCCCCHHHHCCHHHHHHHH
T ss_conf 1015668985078987448888767777799999999999999999987148643244-156764255523524658887
Q ss_pred ----CC-CC----------CE-E---------EECCCHH--HHH--HHCCCC----------------------------
Q ss_conf ----33-43----------20-2---------3101012--233--201345----------------------------
Q gi|254781112|r 147 ----LT-DK----------TV-A---------QILGTDL--SRF--AKELKS---------------------------- 169 (274)
Q Consensus 147 ----L~-g~----------~V-~---------~~~g~~~--~~~--l~~~~~---------------------------- 169 (274)
|+ |. || | ++..|+. ..+ +.++..
T Consensus 622 WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLVLdrPe~~ltGinDpRLRNps~nf~~aTVk~SsVd 701 (993)
T KOG4440 622 WGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLDRPEERLTGINDPRLRNPSDNFIYATVKQSSVD 701 (993)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHH
T ss_conf 67664366678997531377888887524202002523101431232472103667887111683113168873175088
Q ss_pred ----------------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC
Q ss_conf ----------------4213368557777554432100366558999999845876673262367768770799981899
Q gi|254781112|r 170 ----------------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 170 ----------------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 233 (274)
+.-.|.+.+++++.+.+|+.+|++.|.....+-..+. ......+....+.+|+++++|++
T Consensus 702 ~YFrRqVELS~MyR~ME~hNy~~A~eAiq~v~~gkL~AFIWDS~rLEfEAs~~----CeLvT~GeLFgRSgyGIGlqK~S 777 (993)
T KOG4440 702 IYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDGKLHAFIWDSARLEFEASQK----CELVTTGELFGRSGYGIGLQKDS 777 (993)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCEEEHHHCC----CEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99888867888887632002455999999987496168985031033202046----40675112015344431035699
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 899999999999999798599999876788
Q gi|254781112|r 234 NKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 234 ~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
| +...+.-+|-++.++|.++++-++|...
T Consensus 778 P-Wt~~vtlaIL~~hEsGfMEkLDk~Wi~~ 806 (993)
T KOG4440 778 P-WTQNVTLAILKSHESGFMEKLDKTWIRY 806 (993)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9-7303579998861310677777789871
No 26
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=98.92 E-value=7.1e-09 Score=74.56 Aligned_cols=209 Identities=11% Similarity=0.140 Sum_probs=130.8
Q ss_pred CCCEEEEEC--CCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCHHCC---CCH
Q ss_conf 895899962--89987248704699848898852167899762998555668-988988643103221100003---675
Q gi|254781112|r 40 QSALRVGTD--GIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLVNVA---ITP 113 (274)
Q Consensus 40 ~~~l~v~~~--~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~---~t~ 113 (274)
+++++||.+ +.|.|+.+- .++ | +.+..+++.|++++++.. ++...+..+..|++|.++... .+-
T Consensus 1 k~~~kig~S~w~Gw~Pw~~A--~e~----G----ifkKw~~k~Gi~Vel~~f~dy~~si~a~~AG~~Dg~~~Tn~Dal~i 70 (328)
T TIGR03427 1 KDKFKVCWSIYAGWMPWGYA--AQQ----G----IVDKWADKYGITIEVVQINDYVESINQYTAGKFDGCTMTNMDALTI 70 (328)
T ss_pred CCCEEEEEECCCCHHHHHHH--HHC----C----CHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 99339997268538889999--974----9----2655588759737999828848889999758977477626156651
Q ss_pred HHHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHH----HHCCCC---CCEEE-CCHHHHH
Q ss_conf 67542002----333222222222111222211111233432023101012233----201345---42133-6855777
Q gi|254781112|r 114 ERQKKYDF----SIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRF----AKELKS---HLVFS-HNFEQSL 181 (274)
Q Consensus 114 eR~~~~~f----s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~----l~~~~~---~~~~~-~~~~~~~ 181 (274)
....-+.. ..-|.....++++| + +++++||+||+|++..++..+.+ |++.+. .+..+ -+..+..
T Consensus 71 ~aa~Gvd~~~vlv~D~SnG~D~Ivak-~---~~slaDLKGKkVav~~~svshyLL~rALe~aGLs~~DV~vVn~~~~d~~ 146 (328)
T TIGR03427 71 PAAGGVDTTALIVGDFSNGNDGIVLK-G---GKSLADLKGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSDADIV 146 (328)
T ss_pred HHCCCCCEEEEEEECCCCCCCEEEEC-C---CCCHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCHHHEEEEECCCHHHH
T ss_conf 31179972899985257887479978-9---9887884898883247870799999999986998899078847954699
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEC----CCHH----HHHHHHHHHHHHHHCCH-
Q ss_conf 75544321003665589999998458766732623677687707999818----9989----99999999999997985-
Q gi|254781112|r 182 QLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRK----GNNK----LTRSINEILCAIHLDGT- 252 (274)
Q Consensus 182 ~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~~----L~~~in~~l~~l~~~G~- 252 (274)
.++.+|++|+++.-++.... +.+.+....++.....|-.-... ++++. +||+ |...+-++++-|..+.+
T Consensus 147 aAf~sg~VdA~vTWeP~ls~-i~~~~ga~~iF~Ss~iPGeI~D~-lvV~~~~L~~nP~~~kAlv~aW~e~~~~m~~~~~~ 224 (328)
T TIGR03427 147 AAFITKDVTAVVTWNPQLSE-IKAQPGANEVFDSSQIPGEILDL-MVVNTQTLKANPNLGKALTGAWYETMALMSAGDAA 224 (328)
T ss_pred HHHHCCCCCEEEEECHHHHH-HHHCCCCCEEEECCCCCCCEEEE-EEECHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99747998789997856899-97289982644257788840379-99858988879999999999999999998649812
Q ss_pred ---HHHHHHHHCCCC
Q ss_conf ---999998767888
Q gi|254781112|r 253 ---YKKIFDRYFDKN 264 (274)
Q Consensus 253 ---~~~I~~kw~g~d 264 (274)
.-+++.|=-|.|
T Consensus 225 ~~~a~~~ma~~~G~d 239 (328)
T TIGR03427 225 GKAALEAMAKASGTD 239 (328)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 799999999874999
No 27
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=98.77 E-value=1.9e-08 Score=71.86 Aligned_cols=206 Identities=10% Similarity=0.073 Sum_probs=119.1
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCHHCCCCHH---
Q ss_conf 589589996289987248704699848898852167899762998555668-9889886431032211000036756---
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLVNVAITPE--- 114 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~t~e--- 114 (274)
+..+||||....--|+.+-.. +|. +.+.+|++++|+.. ....+.+++.+|.+|+.. +..+|-
T Consensus 21 ~~~~v~igYq~~~~p~~~aka--~g~-----------~ek~~G~kV~W~~F~sG~~~~eAlasG~vDig~-~G~~P~~~a 86 (320)
T PRK11480 21 QAVNVTVAYQTSAEPAKVAQA--DNT-----------FAKESGATVDWRKFDSGASIVRALASGDVQIGN-LGSSPLAVA 86 (320)
T ss_pred CCCEEEEEEECCCCCHHHHHH--CCC-----------HHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEC-CCCCHHHHH
T ss_conf 764599998069862899986--384-----------567519812799779759999999669975645-778479999
Q ss_pred --HHHH--HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHH----HHHCCCCC---CE-EECCHHHHHH
Q ss_conf --7542--00233322222222211122221111123343202310101223----32013454---21-3368557777
Q gi|254781112|r 115 --RQKK--YDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSR----FAKELKSH---LV-FSHNFEQSLQ 182 (274)
Q Consensus 115 --R~~~--~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~----~l~~~~~~---~~-~~~~~~~~~~ 182 (274)
+... +.+....+.....+++|+ .+++++||+||+|++..|+..+. .+++.+.. +. ..-.+.++..
T Consensus 87 ~a~g~~ik~v~i~~~~~~~ealvv~~---~I~s~~DLkGKkVav~~gS~~hy~ll~aL~~~Gl~~~dV~iv~m~p~d~~a 163 (320)
T PRK11480 87 ASQQVPIEVFLLASKLGNSEALVVKK---TISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPPAIIA 163 (320)
T ss_pred HHCCCCEEEEEEECCCCCCEEEEECC---CCCCHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCHHHEEEEECCCHHHHH
T ss_conf 86799859999854789743899568---999968849998960788731899999999859998990788449288999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCC---CCCCEEEEEE----CCCHHHHHHHH----HHHHHHHHCC
Q ss_conf 55443210036655899999984587667326236776---8770799981----89989999999----9999999798
Q gi|254781112|r 183 LLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMK---DNSAVAFMMR----KGNNKLTRSIN----EILCAIHLDG 251 (274)
Q Consensus 183 ~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----k~~~~L~~~in----~~l~~l~~~G 251 (274)
++.+|+||++........ -+++.. ..+....... .+..-.+.++ +++|+++..+= ++.+..+++.
T Consensus 164 A~~~G~vDa~~~W~P~l~-~l~~~G---~vL~~s~~~~~~G~pt~d~~vv~~~Fa~e~Pe~V~~flkv~~~A~~~~~~np 239 (320)
T PRK11480 164 AWQRGDIDGAYVWAPAVN-ALEKDG---KVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSAIDAQQPYIANP 239 (320)
T ss_pred HHHCCCCCEEEECCHHHH-HHHHCC---CEEEECHHHHHCCCCCCCEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 997699787962677999-998439---7886416642048974556886399998898999999999999999999596
Q ss_pred H-------HHHHHHHHCCCCC
Q ss_conf 5-------9999987678887
Q gi|254781112|r 252 T-------YKKIFDRYFDKNI 265 (274)
Q Consensus 252 ~-------~~~I~~kw~g~d~ 265 (274)
. --+.+.|+.|-+.
T Consensus 240 d~~~~~~~~~~~iAk~~G~~~ 260 (320)
T PRK11480 240 DAWLKQPENISKLARLSGVPE 260 (320)
T ss_pred HHHHCCCHHHHHHHHHHCCCH
T ss_conf 744048488999999959898
No 28
>pfam09084 NMT1 NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine.
Probab=98.64 E-value=2.1e-08 Score=71.62 Aligned_cols=128 Identities=19% Similarity=0.079 Sum_probs=81.6
Q ss_pred HHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCHHC--CCCHHHHHHHCCC--CC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7899762998555668-98898864310322110000--3675675420023--33-22222222211122221111123
Q gi|254781112|r 74 KEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLVNV--AITPERQKKYDFS--IP-YIAHRVLLVVRSDQQDIRSFKDL 147 (274)
Q Consensus 74 ~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~~~--~~t~eR~~~~~fs--~p-~~~~~~~~~~~~~~~~~~~~~dL 147 (274)
+-++++.|++++++.. ++...+..|.+|++|+.... ..-..+.+...+. .. +-.....+++++++ .+++++||
T Consensus 13 ~G~f~~~GL~Ve~~~~~~~~~~~~al~sG~~D~a~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~v~~~~-~i~s~~DL 91 (216)
T pfam09084 13 KGYFKEEGLDVEIVEPADPSDAVQLVAAGKADFGVSYQPSLLLARAKGLPVVSVAALIQHPPNGLISLKDS-GIKSPKDL 91 (216)
T ss_pred CCCHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEECCCHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCC-CCCCHHHH
T ss_conf 79468849808999668827899999769867785371999999978984999996435897289997888-98997895
Q ss_pred CCCCEEEECCCHHH----HHHHCCCC-----CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 34320231010122----33201345-----4213368557777554432100366558999999
Q gi|254781112|r 148 TDKTVAQILGTDLS----RFAKELKS-----HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFL 203 (274)
Q Consensus 148 ~g~~V~~~~g~~~~----~~l~~~~~-----~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~ 203 (274)
+||+|++..++... .++++.+. +++.. ++.+...+|.+|++|+++........+.
T Consensus 92 kGk~i~~~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~-~~~~~~~al~~G~vDa~~~~~~~~~~~~ 155 (216)
T pfam09084 92 KGKRIGYSGSPFEEALLKALLAKAGGDPSDVTLVNV-GGTSLSPALLTGKVDAAIGGYYNWEGVE 155 (216)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCHHHEEEEEC-CHHHHHHHHHCCCCCEEEECCCCHHHHH
T ss_conf 898899637972899999999985999899089967-8488888985699558996246757999
No 29
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=98.64 E-value=4.7e-07 Score=63.31 Aligned_cols=190 Identities=14% Similarity=0.115 Sum_probs=110.5
Q ss_pred EHHHHHHHCCC-CCCCCC-CCHHHHHHHHHCCCCCCCHHCCCCH----HHHH--HHCCCCCCCCC--CCCCCCCCCCCCC
Q ss_conf 16789976299-855566-8988988643103221100003675----6754--20023332222--2222211122221
Q gi|254781112|r 72 LIKEVAHRLNL-KVEFFE-TAVSGLITGLDTNRYDVLVNVAITP----ERQK--KYDFSIPYIAH--RVLLVVRSDQQDI 141 (274)
Q Consensus 72 l~~~i~~~lg~-~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~t~----eR~~--~~~fs~p~~~~--~~~~~~~~~~~~~ 141 (274)
..+..+++.|+ +++++. .+|....+.+..|.+|+........ .+.. -+..-...... ...+++++++ .+
T Consensus 50 ~~kG~f~~~Gl~~V~~~~~~~~~~~~~~l~~G~~D~a~~~~~~~~~~~~~~~g~pv~~va~~~~~~~~~~i~~~~~~-~i 128 (335)
T COG0715 50 KEKGFFKKEGLDDVELVEFTGGAPVLEALAAGALDFAVYYTGDTPLIAAGAAGAPVKVVAALVQNGNGIALLVLKDS-GI 128 (335)
T ss_pred HHCCHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEEEECCCCEEEEECCCC-CC
T ss_conf 97891777499758997079845799999769988874237855999963569997999987437973299973887-76
Q ss_pred CCCCCCCCCCEEEECCCH-HHH----HHHCCCC---CC-EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 111123343202310101-223----3201345---42-13368557777554432100366558999999845876673
Q gi|254781112|r 142 RSFKDLTDKTVAQILGTD-LSR----FAKELKS---HL-VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNL 212 (274)
Q Consensus 142 ~~~~dL~g~~V~~~~g~~-~~~----~l~~~~~---~~-~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~ 212 (274)
++++||+||+||+..++. ... ++.+.+. ++ +..-.+.+...+|.+|++|+++..+...... ...+....
T Consensus 129 ~~~adlkGk~vg~~~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~~al~~g~vda~~~~ep~~~~~-~~~~~~~~- 206 (335)
T COG0715 129 KSVADLKGKKVGVPFGGSTSDFLLRYALAKAGLDPDDVELVNLPPADAVAALAAGQVDAFVVWEPWNAAA-EGEGGGRV- 206 (335)
T ss_pred CCHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHCEEEECCHHHHHHHHHCCCCCEEEECCHHHHHH-HHCCCCEE-
T ss_conf 7713338998998189970799999999986999899468736929999999759868899666798997-31578579-
Q ss_pred EEECCCCCC-CCCEEEEEEC----CCHH----HHHHHHHHHHHHHHCC-HHHHHHHHHCCCC
Q ss_conf 262367768-7707999818----9989----9999999999999798-5999998767888
Q gi|254781112|r 213 FKIADRMKD-NSAVAFMMRK----GNNK----LTRSINEILCAIHLDG-TYKKIFDRYFDKN 264 (274)
Q Consensus 213 ~~~~~~~~~-~~~~~~~~~k----~~~~----L~~~in~~l~~l~~~G-~~~~I~~kw~g~d 264 (274)
+........ .....+..++ .+|+ |...+-++..-+.++. +..+++.++.++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~a~~~a~~~~~~~p~~a~~~~~~~~~~~ 268 (335)
T COG0715 207 LLDGADLWGNHPELVLVVRKEFIEANPEAVKAFLKALAKATAWANAHPDEAAEILAKAAGEL 268 (335)
T ss_pred EEECCCCCCCCCEEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
T ss_conf 86156667667426999558877669999999999999999999979899999999853655
No 30
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=98.23 E-value=1e-05 Score=55.00 Aligned_cols=202 Identities=14% Similarity=0.124 Sum_probs=112.0
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHH-HHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH--HCC-
Q ss_conf 788589589996289987248704699848898852167899-76299855566-8988988643103221100--003-
Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVA-HRLNLKVEFFE-TAVSGLITGLDTNRYDVLV--NVA- 110 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~-~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~--~~~- 110 (274)
...+.++|+||+.+. |+.-. .+.+...+ ++-|++++++. .+|.+--.+|.+|++|+-. -..
T Consensus 27 ~~~~~k~ikVG~~~~--p~~~i------------~e~~~~~~~ek~G~~leiv~FsDy~~PN~AL~~G~iDaN~fQH~py 92 (272)
T PRK09861 27 SSSDAKHIKVGVING--AEQDV------------AEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPF 92 (272)
T ss_pred CCCCCCEEEEEECCC--CHHHH------------HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCCHHHHHHHH
T ss_conf 767897389996789--86999------------9999988876179768999946862262897679836024557999
Q ss_pred ---CCHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCH-HHH---HHHCCCC-----------
Q ss_conf ---675675420023--33222222222111222211111233-43202310101-223---3201345-----------
Q gi|254781112|r 111 ---ITPERQKKYDFS--IPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTD-LSR---FAKELKS----------- 169 (274)
Q Consensus 111 ---~t~eR~~~~~fs--~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~-~~~---~l~~~~~----------- 169 (274)
+.+++ .+.+. .+.+..+.+++.+ ++++++||+ |-+|++..+.+ ..+ ++++.+.
T Consensus 93 L~~~n~~~--g~~L~~v~~~~~~P~glYS~----K~ksl~dlp~Ga~IaIPnDpsN~~RAL~lL~~aGLI~Lk~~~~~~~ 166 (272)
T PRK09861 93 LEQDNQAH--GYKLVAVGNTFVFPMAGYSK----KIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLP 166 (272)
T ss_pred HHHHHHHC--CCCEEEEEEEEEEEEEECCC----CCCCHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCCC
T ss_conf 99999986--99579973167830140344----6598758479998980478126999999999889789779999777
Q ss_pred ------------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC--CCCEEECCCCCCCCCEEEEEECCCHH
Q ss_conf ------------4213368557777554432100366558999999845876--67326236776877079998189989
Q gi|254781112|r 170 ------------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHD--GNLFKIADRMKDNSAVAFMMRKGNNK 235 (274)
Q Consensus 170 ------------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~ 235 (274)
++++. +..+..+.|....+|++++....+ ...+.. ...+.. .....+..-.+++++++..
T Consensus 167 t~~DI~~NPk~lk~~e~-~aaql~rsl~Dp~vD~avin~n~a----~~agl~p~~dal~~-E~~~~py~niiavr~~~~d 240 (272)
T PRK09861 167 TALDITDNPRHLQIMEL-EGAQLPRVLDDPKVDVAIISTTYI----QQTGLSPVHDSVFI-EDKNSPYVNILVAREDNKN 240 (272)
T ss_pred CHHHHHCCCCCCEEEEC-CHHHHHHHHCCCCCCEEEECHHHH----HHCCCCCCCCCEEE-CCCCCCEEEEEEECCCCCC
T ss_conf 74457608877679982-677746750577616899760579----88777944002036-6899983799998276769
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 999999999999979859999987678887
Q gi|254781112|r 236 LTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274)
Q Consensus 236 L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274)
- ..+ +.|.+..+|.+.++.+++-|+-.+
T Consensus 241 ~-~~i-k~lv~a~~S~evk~~i~~~y~G~~ 268 (272)
T PRK09861 241 A-ENV-KEFLQSYQSPEVAKAAETIFNGGA 268 (272)
T ss_pred C-HHH-HHHHHHHCCHHHHHHHHHHCCCCE
T ss_conf 9-899-999999779999999998779963
No 31
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=98.20 E-value=2e-05 Score=53.19 Aligned_cols=199 Identities=13% Similarity=0.093 Sum_probs=107.6
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHH-HHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH--HCC--
Q ss_conf 88589589996289987248704699848898852167899-76299855566-8988988643103221100--003--
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVA-HRLNLKVEFFE-TAVSGLITGLDTNRYDVLV--NVA-- 110 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~-~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~--~~~-- 110 (274)
..+..+|+||+.+. |+.-. .+.+...+ ++.|++++++. .+|..--.+|.+|.+|+-. ...
T Consensus 27 ~~~~~~ikVG~~~g--p~~ei------------~e~~~~~~~ek~G~~veiv~FsDy~~pN~AL~~G~iDaN~fQH~~yL 92 (271)
T PRK11063 27 EKDPNHIKVGVIVG--AEQQV------------AEVAQKVAKEKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYL 92 (271)
T ss_pred CCCCCEEEEEECCC--CHHHH------------HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHCHHHH
T ss_conf 56798189984689--87999------------99988888860797689999368321558986798442345579999
Q ss_pred --CCHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCH-HHH---HHHCCCC------------
Q ss_conf --675675420023--33222222222111222211111233-43202310101-223---3201345------------
Q gi|254781112|r 111 --ITPERQKKYDFS--IPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTD-LSR---FAKELKS------------ 169 (274)
Q Consensus 111 --~t~eR~~~~~fs--~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~-~~~---~l~~~~~------------ 169 (274)
+.+++ .+.+. .+.+..+..++. ..+++++||. |-+|++..+.+ ..+ ++++.+.
T Consensus 93 ~~~nk~~--g~~L~~v~~~~~~P~glYS----~K~ksl~elp~Ga~IaIPND~sN~~RAL~lL~~aGLIkLk~~~~~~~T 166 (271)
T PRK11063 93 DQQIKDR--GYKLVAVGNTFVYPIAGYS----KKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPT 166 (271)
T ss_pred HHHHHHC--CCCEEEEEEEEEEEEEEEE----CCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 9999977--9957998667784158642----365886475699999804885609999999998898897799998789
Q ss_pred -----------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC--CCEEECCCCCCCCCEEEEEECCCHHH
Q ss_conf -----------42133685577775544321003665589999998458766--73262367768770799981899899
Q gi|254781112|r 170 -----------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDG--NLFKIADRMKDNSAVAFMMRKGNNKL 236 (274)
Q Consensus 170 -----------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~~L 236 (274)
++++. +..+..+.|....+|+++++... ....+... ..+.. .....+..-.+++++++..
T Consensus 167 ~~DI~~Npk~l~~~e~-daaql~rsl~D~dv~~aviN~~~----a~~agl~p~kdal~~-E~~~~py~Nvivvr~~~kd- 239 (271)
T PRK11063 167 VLDIVENPKNLKIVEL-EAPQLPRSLDDAQIALAVINTTY----ASQIGLTPAKDGIFV-EDKDSPYVNLIVAREDNKD- 239 (271)
T ss_pred HHHHHCCCCCCEEEEC-CHHHHHHHCCCCCEEEEEECHHH----HHHCCCCCCCCCEEE-CCCCCCEEEEEEECCCCCC-
T ss_conf 6688548877489990-37764431357651089814778----977798934250477-7899983899998277779-
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 999999999999798599999876788
Q gi|254781112|r 237 TRSINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 237 ~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
+..=+.|.+..+|.+.++.+++-|+-
T Consensus 240 -~~~ik~lv~~~~S~evk~~I~~~~~G 265 (271)
T PRK11063 240 -AENVKKFVQAYQSDEVYEAANKVFNG 265 (271)
T ss_pred -CHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf -98999999997799999999987799
No 32
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=98.13 E-value=2.2e-05 Score=52.95 Aligned_cols=202 Identities=17% Similarity=0.225 Sum_probs=121.4
Q ss_pred HHHHCCCEEEEECCCC-CCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC-CCCCHHCCC-C
Q ss_conf 7885895899962899-872487046998488988521678997629985556689889886431032-211000036-7
Q gi|254781112|r 36 RTEDQSALRVGTDGIY-PPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNR-YDVLVNVAI-T 112 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~-pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~-~D~~~~~~~-t 112 (274)
.+++..+|+|...... .|++ ++..+..++.|.++++..-....+...+++|. +|+..+... .
T Consensus 25 ~~~~~~~i~VfAAaSL~~~l~---------------~i~~~F~~~~~~~V~~~f~gS~~l~~qIe~Ga~~D~fiSa~~~~ 89 (258)
T COG0725 25 AAQEAATITVFAAASLTDALE---------------EIAKQFEKETGVKVEVEFGGSGALARQIEQGAPADLFISADDAY 89 (258)
T ss_pred CCCCCCEEEEEEEHHHHHHHH---------------HHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCEEEECCHHH
T ss_conf 445674099998156689999---------------99999999879879999613899999997599868799888888
Q ss_pred HH--HHHH-H--CCCCCCCCCCCCCCCCCCCC-CCCCCCCC---CCCCEEE------ECCCHHHHHHHCC------CCCC
Q ss_conf 56--7542-0--02333222222222111222-21111123---3432023------1010122332013------4542
Q gi|254781112|r 113 PE--RQKK-Y--DFSIPYIAHRVLLVVRSDQQ-DIRSFKDL---TDKTVAQ------ILGTDLSRFAKEL------KSHL 171 (274)
Q Consensus 113 ~e--R~~~-~--~fs~p~~~~~~~~~~~~~~~-~~~~~~dL---~g~~V~~------~~g~~~~~~l~~~------~~~~ 171 (274)
.. .++. + .+..++.....++++++++. ....+.++ .+.|+++ +.|....+.++.. ..++
T Consensus 90 ~~~l~~~g~~~~~~~~~fa~n~lvl~~~~~~~~~~~~~~~l~~~~~~~lai~~p~~~P~G~ya~~~l~~~g~~~~~~~k~ 169 (258)
T COG0725 90 MDKLEDKGLIYADSRIVFAGNRLVLAVPKGSKKKIESLEDLLERPDVRLAIGDPKTVPAGKYAKEALELLGLWYTLKDKL 169 (258)
T ss_pred HHHHHHCCCCCCCCEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCHHHHCCCCE
T ss_conf 99998668856671577425748999868874565129887308785799648876971499999999705145336754
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH
Q ss_conf 1336855777755443210036655899999984587667326236776877079998189--98999999999999997
Q gi|254781112|r 172 VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINEILCAIHL 249 (274)
Q Consensus 172 ~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~~l~~l~~ 249 (274)
+...+..+++..+.+|++|+.+.-...+... ........+......+..+.+++.++ ++++...+-+.|..
T Consensus 170 v~~~~v~~~l~~V~~G~ad~g~vy~sd~~~~----~~~~~~~~~~~~~~~Pi~y~iav~~~~~~~~~A~~f~~fl~s--- 242 (258)
T COG0725 170 VLATNVRQALAYVETGEADAGFVYVSDALLS----KKVKIVGVFPEDLHSPIVYPIAVLKNAKNPELAKEFVDFLLS--- 242 (258)
T ss_pred EECCCHHHHHHHHHCCCCCEEEEEEEHHHHC----CCCEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHC---
T ss_conf 6536579899998637877799997633406----776089973566689716789997388985999999999718---
Q ss_pred CCHHHHHHHHH
Q ss_conf 98599999876
Q gi|254781112|r 250 DGTYKKIFDRY 260 (274)
Q Consensus 250 ~G~~~~I~~kw 260 (274)
.+-++|.++|
T Consensus 243 -~~a~~il~~~ 252 (258)
T COG0725 243 -PEAQEILEKY 252 (258)
T ss_pred -HHHHHHHHHC
T ss_conf -7779999984
No 33
>COG4521 TauA ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=98.08 E-value=0.00022 Score=46.83 Aligned_cols=190 Identities=13% Similarity=0.124 Sum_probs=108.7
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCH-HHHHHHHHCCCCCCC-HHCCCCH---HHH
Q ss_conf 58999628998724870469984889885216789976299855566898-898864310322110-0003675---675
Q gi|254781112|r 42 ALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAV-SGLITGLDTNRYDVL-VNVAITP---ERQ 116 (274)
Q Consensus 42 ~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~-~~~~~~l~~g~~D~~-~~~~~t~---eR~ 116 (274)
.++||....--|+---..| | ..++..|.++.|...+. .+.+.+|-+|.+++- .|-+... .|.
T Consensus 30 ~vtVgYQt~~eP~kvaqAD------g-------~~aK~~gatiDWRkFdSG~~vv~AlASGdvqiG~iGSsplaaAaSr~ 96 (334)
T COG4521 30 DVTVGYQTSAEPAKVAQAD------G-------AFAKESGATIDWRKFDSGASIVRALASGDVQIGNIGSSPLAAAASRQ 96 (334)
T ss_pred EEEEEEEECCCCCCCCCCC------C-------HHHHHCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCC
T ss_conf 1688654035752021346------3-------56776078545110475368999986288610465785666776358
Q ss_pred HH--HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCH--HH--HHHHCCCCC---CEE-ECCHHHHHHHHHH
Q ss_conf 42--00233322222222211122221111123343202310101--22--332013454---213-3685577775544
Q gi|254781112|r 117 KK--YDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTD--LS--RFAKELKSH---LVF-SHNFEQSLQLLLS 186 (274)
Q Consensus 117 ~~--~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~--~~--~~l~~~~~~---~~~-~~~~~~~~~~l~~ 186 (274)
-- .-|-..-.-.+..+++|+++ .|.+++||.||+|++.-=++ |. .-++.++.+ +.. --.+.+...+-..
T Consensus 97 vpie~f~~~~~ig~sEALVvr~gs-gI~kpeDL~GK~iavPFvSTtHysLLaaLkhw~idp~~V~IlNl~Pp~IaAAwqR 175 (334)
T COG4521 97 VPIEVFLLASQIGNSEALVVRKGS-GIEKPEDLIGKRIAVPFVSTTHYSLLAALKHWGIDPGQVEILNLQPPAIAAAWQR 175 (334)
T ss_pred CCEEEEEHHHHCCCCCEEEEECCC-CCCCHHHHCCCEECCCEEEHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHC
T ss_conf 865885301212863103552377-8698578646721042430008999999987187855246861597899999870
Q ss_pred HHHHCCCCCHHHHHHHHHHCCC-CCCCEEECCCCCCCCCEEEEEECC----CHHHHHHHHHHHHHH
Q ss_conf 3210036655899999984587-667326236776877079998189----989999999999999
Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPH-DGNLFKIADRMKDNSAVAFMMRKG----NNKLTRSINEILCAI 247 (274)
Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~----~~~L~~~in~~l~~l 247 (274)
|.+|++..-..-... +++.+. ..+.-. ...-..+..-.+.++|+ +|+.+..|-+....-
T Consensus 176 GDIDgAyVW~PAl~e-l~ksGkVltDs~q-vgqwgaPTfdvwVvrkdfAekhPe~v~aFakv~~da 239 (334)
T COG4521 176 GDIDGAYVWAPALSE-LKKSGKVLTDSEQ-VGQWGAPTFDVWVVRKDFAEKHPEVVAAFAKVALDA 239 (334)
T ss_pred CCCCCEEECCHHHHH-HHHCCCEECCHHH-HHCCCCCCEEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_conf 787722544676888-8625857526888-621479851368863176676969999999988876
No 34
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=98.05 E-value=7.6e-05 Score=49.65 Aligned_cols=202 Identities=12% Similarity=0.133 Sum_probs=116.3
Q ss_pred HHHHHCCCEEEEECCCC-CCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC-CCCCHHCCCC
Q ss_conf 87885895899962899-872487046998488988521678997629985556689889886431032-2110000367
Q gi|254781112|r 35 FRTEDQSALRVGTDGIY-PPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNR-YDVLVNVAIT 112 (274)
Q Consensus 35 ~~~~~~~~l~v~~~~~~-pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~-~D~~~~~~~t 112 (274)
....+.++|+|....+. +|+. ||....-+..|+++++..-....+...+++|. +|+..+....
T Consensus 21 ~~~a~~~~l~V~aAAsL~~~~~---------------ei~~~Fek~~g~~v~~~fgsSg~L~~QI~~GAp~DvF~sAd~~ 85 (257)
T PRK10677 21 NALADEGKITVFAAASLTNAMQ---------------DIATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQK 85 (257)
T ss_pred CCCCCCCEEEEEEECCCHHHHH---------------HHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCEEEECCHH
T ss_conf 3325688599999257689999---------------9999998841984999966489999999828996589978757
Q ss_pred -HHHH---HHHCCC--CCCCCCCCCCCCCCCCC----CCCCCCC----CCCCCEEEE------CCCHHHHHHHCC-----
Q ss_conf -5675---420023--33222222222111222----2111112----334320231------010122332013-----
Q gi|254781112|r 113 -PERQ---KKYDFS--IPYIAHRVLLVVRSDQQ----DIRSFKD----LTDKTVAQI------LGTDLSRFAKEL----- 167 (274)
Q Consensus 113 -~eR~---~~~~fs--~p~~~~~~~~~~~~~~~----~~~~~~d----L~g~~V~~~------~g~~~~~~l~~~----- 167 (274)
.++. ..+.-. .++.....+++++++.. .+....| +.+.||++. .|-...+.+++.
T Consensus 86 ~~~~l~~~~~i~~~~~~~~a~n~lvli~pk~~~~~~~~i~~~~d~~~ll~~~riaia~P~~aP~G~ya~~~L~~~gl~~~ 165 (257)
T PRK10677 86 WMDYAVDKKAIDTATRQTLLGNSLVVVAPKASEQKDFTIDKKTDWTSLLNGGRLAVGDPDHVPAGIYAKEALQKLGAWDT 165 (257)
T ss_pred HHHHHHHCCCCCCCCEEEEECCEEEEEEECCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCHHH
T ss_conf 78999867785677645621474999984687778644343323777425880898588888657999999997676655
Q ss_pred -CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHHHH
Q ss_conf -45421336855777755443210036655899999984587667326236776877079998189--989999999999
Q gi|254781112|r 168 -KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINEIL 244 (274)
Q Consensus 168 -~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~~l 244 (274)
..+++..++..+.+..+.+|++|+.+.-...+.. .........++.....+..+.+++-++ ++.. +.+
T Consensus 166 l~~klv~~~nV~~~l~~v~~G~adaG~Vy~Sda~~----~~~~~~~~~~p~~~~~pi~y~~ai~~~~~~~~a-----~~F 236 (257)
T PRK10677 166 LSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVA----SKGVKVVATFPEDSHKKVEYPMAIVEGHNNATV-----SAF 236 (257)
T ss_pred HCCCEEECCCHHHHHHHHHCCCCCEEEEECCHHHC----CCCCEEEEECCHHHCCCCEEEEEEECCCCCHHH-----HHH
T ss_conf 06541325769999999982998789997000222----688649998774538961455899759999999-----999
Q ss_pred HHHHHCCHHHHHHHHH
Q ss_conf 9999798599999876
Q gi|254781112|r 245 CAIHLDGTYKKIFDRY 260 (274)
Q Consensus 245 ~~l~~~G~~~~I~~kw 260 (274)
-+...|.+-++|++||
T Consensus 237 ~~fl~S~~a~~Il~~~ 252 (257)
T PRK10677 237 YDYLKGPQAAEIFKRY 252 (257)
T ss_pred HHHHCCHHHHHHHHHH
T ss_conf 9997799999999982
No 35
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=97.91 E-value=1.1e-05 Score=54.91 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=79.5
Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHH-HCCCCCCCCCCCH-HHHHHHHHCCCCCCCHHCC-----
Q ss_conf 85895899962899872487046998488988521678997-6299855566898-8988643103221100003-----
Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAH-RLNLKVEFFETAV-SGLITGLDTNRYDVLVNVA----- 110 (274)
Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~-~lg~~~~~~~~~~-~~~~~~l~~g~~D~~~~~~----- 110 (274)
.+...+++|+...-=.| + =+...|++.+.+ ..|++++.++..- -.-+..+.+|++|+....+
T Consensus 23 ~~~~~itigTG~~~G~Y--Y---------~ig~~ia~~~~~~~~~i~~~v~~tggSv~Nl~~i~~Ge~d~alvq~d~a~~ 91 (321)
T COG2358 23 AEPKFITIGTGSTGGVY--Y---------PIGGGLAQLLNKDEKGIECSVVPTGGSVENLKLLASGEADLALVQSDVAYE 91 (321)
T ss_pred CCCEEEEEEECCCCCEE--E---------EHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 67637999606998622--3---------037899999851477818999606542999986753762535666789999
Q ss_pred ------CCHH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-ECCCH----HHHHHHCCCCCCEE----
Q ss_conf ------6756--7542002333222222222111222211111233432023-10101----22332013454213----
Q gi|254781112|r 111 ------ITPE--RQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQ-ILGTD----LSRFAKELKSHLVF---- 173 (274)
Q Consensus 111 ------~t~e--R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~-~~g~~----~~~~l~~~~~~~~~---- 173 (274)
.-+. ..+.+..--+++.....+++|+++. |++++||+||||++ ..||- ....++..+....+
T Consensus 92 ay~G~g~f~~~~~~~~lr~v~~lype~~~vv~r~d~~-Ikti~DL~GKrV~iG~~gSgt~~~a~~il~a~Gi~~~~~~~~ 170 (321)
T COG2358 92 AYNGTGSFEGKGKDENLRAVAALYPEPFHVVTRKDAG-IKTIADLKGKRVAIGPPGSGTEATARQILEALGITYDDYELD 170 (321)
T ss_pred HHHCCCCCCCCCCCCCHHHHEECCCCEEEEEEECCCC-CCEEHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHH
T ss_conf 8718531145665514332213054208999966889-656010389888626999740889999999739997624566
Q ss_pred -ECCHHHHHHHHHHHHHHCCCC
Q ss_conf -368557777554432100366
Q gi|254781112|r 174 -SHNFEQSLQLLLSKRTDATMI 194 (274)
Q Consensus 174 -~~~~~~~~~~l~~grvD~~~~ 194 (274)
.-...+...++.+|++|+++.
T Consensus 171 ~~~~~a~~~~~l~~g~iDA~~~ 192 (321)
T COG2358 171 LGLGDAESADALKNGTIDAAFY 192 (321)
T ss_pred HHCCCHHHHHHHHCCCCCEEEE
T ss_conf 6337306578763796328998
No 36
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.00021 Score=46.96 Aligned_cols=173 Identities=13% Similarity=0.080 Sum_probs=103.3
Q ss_pred EEEHHHHHHHCCCCCCCCCCCH------HHHHHHHHCCCCCCCH-HCCCCHHHHH-HHCCCCCCCCCCC-----------
Q ss_conf 5216789976299855566898------8988643103221100-0036756754-2002333222222-----------
Q gi|254781112|r 70 IDLIKEVAHRLNLKVEFFETAV------SGLITGLDTNRYDVLV-NVAITPERQK-KYDFSIPYIAHRV----------- 130 (274)
Q Consensus 70 ~dl~~~i~~~lg~~~~~~~~~~------~~~~~~l~~g~~D~~~-~~~~t~eR~~-~~~fs~p~~~~~~----------- 130 (274)
..+.+++.+++|=++++...|. ..+++.|+.|.+|+.. +.+....+.. .-.|+.||+....
T Consensus 47 ~~fa~~v~ekt~G~l~i~vfP~~qLG~~~~~ie~l~~G~id~~~~s~~~l~~~~P~~~v~~lPflf~d~~~~~~~~~~~~ 126 (332)
T COG1638 47 KKFAELVEEKTGGRLKIEVFPNSQLGGEAEMIEQLRSGTLDIGVVSLGFLAGLVPEFGVFDLPFLFRDEEHARRVLDSEF 126 (332)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCHHHCCCCCCCEEECCCEEECCHHHHHHHHHHHH
T ss_conf 99999999871993899976675668769999999659730785065232113875012248755189999999971388
Q ss_pred -----------CCC--------CC--CC-CCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf -----------222--------11--12-222111112334320231010122332013454213368557777554432
Q gi|254781112|r 131 -----------LLV--------VR--SD-QQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKR 188 (274)
Q Consensus 131 -----------~~~--------~~--~~-~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~gr 188 (274)
.+. .| .. ...+.+++||+|+++-++....+..+.+..+...+..+ ..+.+.+|.+|-
T Consensus 127 g~~l~~~~e~~g~~~l~~~~~G~R~~t~~k~PI~~peDlkGlkiRv~~s~~~~~~~~a~GA~P~pm~-f~Evy~aLqtGv 205 (332)
T COG1638 127 GEELLKSLEAKGLKGLAFWENGFRQFTSNKRPIKTPEDLKGLKIRVPQSPLLLAMFKALGANPTPMP-FAEVYTALQTGV 205 (332)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCHHHHCCCEEECCCCHHHHHHHHHCCCCCCCCC-HHHHHHHHHCCC
T ss_conf 9999999997695799986275223334678778968967984635898899999998699897788-899999997497
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHHHHH
Q ss_conf 10036655899999984587667326236776877079998189-----989999999999999
Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEILCAI 247 (274)
Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l~~l 247 (274)
||+.-.+.... +-.+....... ....-....++.+.+++. .++.+..|.++..+-
T Consensus 206 VDGqEnp~~~i--~~~k~~EVqky--~t~tnH~~~~~~~~~s~~~w~~L~~e~q~il~~aa~e~ 265 (332)
T COG1638 206 VDGQENPLSNI--YSAKLYEVQKY--LTLTNHIYLPLAVLVSKAFWDSLPEEDQTILLEAAKEA 265 (332)
T ss_pred CCCCCCCHHHH--HCCCHHHHHHH--HHHCCCCCCCEEEEECHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 00441767666--10426567566--52156655542689738988309999999999999999
No 37
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein; InterPro: IPR010068 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulphonates, and sulphate esters import sulphur when sulphate levels are low. The most closely related proteins outside this family are putative aliphatic sulphonate binding proteins..
Probab=97.75 E-value=0.00012 Score=48.47 Aligned_cols=174 Identities=17% Similarity=0.146 Sum_probs=107.8
Q ss_pred HHHHHHHCCCCCCCCCCCH-HHHHHHHHCCCCCCC-HHCCC---CHHHHH--HHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6789976299855566898-898864310322110-00036---756754--2002333222222222111222211111
Q gi|254781112|r 73 IKEVAHRLNLKVEFFETAV-SGLITGLDTNRYDVL-VNVAI---TPERQK--KYDFSIPYIAHRVLLVVRSDQQDIRSFK 145 (274)
Q Consensus 73 ~~~i~~~lg~~~~~~~~~~-~~~~~~l~~g~~D~~-~~~~~---t~eR~~--~~~fs~p~~~~~~~~~~~~~~~~~~~~~ 145 (274)
....++..|.++.|+..+. ..++.+|-+|++|+- .|-+. -..|+- .+-|-.-.+-.+.+|++|+++ .|..++
T Consensus 21 fda~aKe~gaTiDWRkFdSGadi~~AlASG~V~IG~~GSsplaaAASr~vpie~f~~~~~iG~SEALVar~g~-GIeKpe 99 (304)
T TIGR01729 21 FDAYAKEAGATIDWRKFDSGADIVAALASGDVDIGVVGSSPLAAAASREVPIEVFLVVDKIGKSEALVAREGA-GIEKPE 99 (304)
T ss_pred HHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCEEEEECCC-CCCCHH
T ss_conf 2245430488020011044165555653386332222470789987268830020100102872002454367-887666
Q ss_pred CCCCCCEEEECC--CHHHH--HHHC-CCCC--CEEEC--CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC-CCCEEE
Q ss_conf 233432023101--01223--3201-3454--21336--8557777554432100366558999999845876-673262
Q gi|254781112|r 146 DLTDKTVAQILG--TDLSR--FAKE-LKSH--LVFSH--NFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHD-GNLFKI 215 (274)
Q Consensus 146 dL~g~~V~~~~g--~~~~~--~l~~-~~~~--~~~~~--~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~-~~~~~~ 215 (274)
||+||+|+|+-= +.|.- -|++ .+.+ -+..- .+.+.+-+...|.+|++-.-..-+. .+.+.+.- .+.-.+
T Consensus 100 DL~GK~vaVPFvSTtHysLLaaLk~vw~~dp~~V~IlNl~PP~I~AAwqRGDIDaAYVW~PAl~-~l~k~GKV~~DSeqv 178 (304)
T TIGR01729 100 DLKGKKVAVPFVSTTHYSLLAALKHVWKVDPKEVEILNLKPPEIVAAWQRGDIDAAYVWDPALS-ELKKSGKVVSDSEQV 178 (304)
T ss_pred HHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHH-HHHHCCCEEECHHHH
T ss_conf 7178845027511345899998887626787605786179657998754388262103745688-775359668525787
Q ss_pred CCCCCCCCCEEEEEECC----CHHHHHHHHHHHHHHHH
Q ss_conf 36776877079998189----98999999999999997
Q gi|254781112|r 216 ADRMKDNSAVAFMMRKG----NNKLTRSINEILCAIHL 249 (274)
Q Consensus 216 ~~~~~~~~~~~~~~~k~----~~~L~~~in~~l~~l~~ 249 (274)
..-..+..=++.++|+ ||+.+..|-+.+..-.+
T Consensus 179 -gawgaPTfD~wvvrkdfAeknPe~v~aF~Kv~~dAya 215 (304)
T TIGR01729 179 -GAWGAPTFDAWVVRKDFAEKNPEVVKAFVKVLADAYA 215 (304)
T ss_pred -HHCCCCCCCEEEEECHHHHHCHHHHHHHHHHHHHHHH
T ss_conf -4136873102465214543070789999988998501
No 38
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=97.65 E-value=0.0006 Score=44.09 Aligned_cols=210 Identities=16% Similarity=0.148 Sum_probs=108.4
Q ss_pred HHHHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCC-HHHHHHHHHC---CCCC
Q ss_conf 98417887885895899962899872487046998488988521678997629985556689-8898864310---3221
Q gi|254781112|r 29 YFVIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETA-VSGLITGLDT---NRYD 104 (274)
Q Consensus 29 ~~~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~-~~~~~~~l~~---g~~D 104 (274)
+..+.++.+.+.++|+|-. |. .|. +.|+++..-++.|++|++...+ -+.++..|+. |.+|
T Consensus 15 ~l~~~~~~a~~~~~L~i~~---W~--~Yi-----------~~~~i~~Fe~etGikV~~~~~~s~ee~~akL~a~~~~~yD 78 (348)
T PRK09501 15 ALGMSAAHADDNNTLYFYN---WT--EYV-----------PPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYD 78 (348)
T ss_pred HHHCCHHHHCCCCEEEEEC---CC--CCC-----------CHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCE
T ss_conf 9735033543389799987---10--018-----------9789999999989889999549999999999717999828
Q ss_pred CCHHCCCCHHHH--------------------------H----HHCCCCCCCCCCCCCCCCCCC---CCCCCCCCC----
Q ss_conf 100003675675--------------------------4----200233322222222211122---221111123----
Q gi|254781112|r 105 VLVNVAITPERQ--------------------------K----KYDFSIPYIAHRVLLVVRSDQ---QDIRSFKDL---- 147 (274)
Q Consensus 105 ~~~~~~~t~eR~--------------------------~----~~~fs~p~~~~~~~~~~~~~~---~~~~~~~dL---- 147 (274)
++..-.+..+|- . .-.|+-||.....++..+++. ..+++++||
T Consensus 79 vv~ps~~~v~~l~~~gll~~LD~s~ipN~~nl~p~~~~~~~dp~~~y~vPy~wGt~Gi~yn~d~v~~~~~~SW~dL~dp~ 158 (348)
T PRK09501 79 LVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPE 158 (348)
T ss_pred EEEECHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHCCHH
T ss_conf 99979689999997798454784228481226976744774899848988997511599850114788888789854966
Q ss_pred -CCCCEEEEC-------------C----CHHH-------HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf -343202310-------------1----0122-------33201345421336855777755443210036655899999
Q gi|254781112|r 148 -TDKTVAQIL-------------G----TDLS-------RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNF 202 (274)
Q Consensus 148 -~g~~V~~~~-------------g----~~~~-------~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~ 202 (274)
+|+ |++.. | +... +.+++...++..+.+ ++..+.+.+|++++.++-.-.+...
T Consensus 159 ~kGk-i~~~d~~~~~~~~al~~lG~~~n~~d~~~l~~a~~~L~~~~~~i~~~~s-d~~~~~l~~Gev~ia~~wsgda~~~ 236 (348)
T PRK09501 159 YKGS-LLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNS-DNPANPYMEGEVNLGMIWNGSAFVA 236 (348)
T ss_pred HCCE-EEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEC-CCHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 4790-7971667899999999827998889999999999999985110589817-7054698738832998740589999
Q ss_pred HHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHH-HHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 984587667326236776877079998189--989999-9999999999798599999876788
Q gi|254781112|r 203 LERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTR-SINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~-~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
. +.. ....+.++.+-..---=+++++++ |+++.. .||-.+ +.+..+-...+.|.
T Consensus 237 ~-~~~-~~i~~v~PkEG~~~w~D~~~Ipk~A~n~e~A~~FInf~l-----~Pevaa~~a~~~~y 293 (348)
T PRK09501 237 R-QAG-TPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLL-----RPDVAKQVAETIGY 293 (348)
T ss_pred H-HCC-CCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHH-----CHHHHHHHHHHHCC
T ss_conf 9-708-997189757886699899889899989899999999861-----97999999997488
No 39
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00016 Score=47.60 Aligned_cols=198 Identities=14% Similarity=0.128 Sum_probs=99.6
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEE-EHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCC-H-HCCCCHH--
Q ss_conf 9589996289987248704699848898852-16789976299855566-898898864310322110-0-0036756--
Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDGRGELTGFDID-LIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVL-V-NVAITPE-- 114 (274)
Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~d-l~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~-~-~~~~t~e-- 114 (274)
.+|+||+.+. |+. +. .+ .++...++-|++++++. .+|..--.+|.+|++|+- + -..|-++
T Consensus 29 ~~I~vg~~~~--p~a--------~i----le~~~k~~~~k~Gi~l~i~~FtDY~~PN~AL~~gdiDaN~FQH~pyL~~~~ 94 (268)
T COG1464 29 KTIKVGATPG--PHA--------EI----LEVVVKPALKKKGLDLKIVEFTDYVQPNEALADGDIDANAFQHKPYLDQFN 94 (268)
T ss_pred CCEEEEECCC--CHH--------HH----HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCCHHHHCHHHHHHHH
T ss_conf 7179963689--659--------99----999987788855965999981487665578766884600121468899999
Q ss_pred HHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCH-HHH---HHHCCCC------------------
Q ss_conf 75420023--33222222222111222211111233-43202310101-223---3201345------------------
Q gi|254781112|r 115 RQKKYDFS--IPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTD-LSR---FAKELKS------------------ 169 (274)
Q Consensus 115 R~~~~~fs--~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~-~~~---~l~~~~~------------------ 169 (274)
++....+. ..-+..+.+++. .++++++||+ |-+|++..+-+ ..+ .+++.|.
T Consensus 95 k~~~~~Lv~vg~~~i~Pmg~YS----kk~ksl~el~~GatIaiPNDpsN~gRAL~lL~~aGLIkLk~~~~~~aT~~DI~e 170 (268)
T COG1464 95 KEHGGKLVAVGNTHIEPMGLYS----KKYKSLAELKDGATIAIPNDPTNEGRALLLLQKAGLIKLKDGVNLLATPKDITE 170 (268)
T ss_pred HHCCCCEEEEEEEEECCCEECC----HHCCCHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHH
T ss_conf 9739978987557761425012----200868467999989887898735679999998796797688765588878861
Q ss_pred ---CCEEE-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCC--CCCCCCEEEEEECCCH--HHHHHHH
Q ss_conf ---42133-68557777554432100366558999999845876673262367--7687707999818998--9999999
Q gi|254781112|r 170 ---HLVFS-HNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADR--MKDNSAVAFMMRKGNN--KLTRSIN 241 (274)
Q Consensus 170 ---~~~~~-~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~--~L~~~in 241 (274)
++... -+..+..+.|.. +|+++++.. |..+.+.....-.+..+ ..+++.--+++|+++. +....
T Consensus 171 NPK~lki~EldAaqlpRaLdd--vD~AvIN~n----yA~~AgL~p~kdai~~e~~~~spY~Niivvr~~d~d~~~ik~-- 242 (268)
T COG1464 171 NPKNLKIKELEAAQLPRALDD--VDAAVINTN----YALQAGLNPKKDALFEEDKDSSPYVNIIVVREEDKDDPAVKK-- 242 (268)
T ss_pred CCCCCEEEECCHHHCCCCCCC--CCEEEECCH----HHHHCCCCCCCCCEECCCCCCCCCEEEEEECCCCCCCHHHHH--
T ss_conf 944575687056756532035--677987430----797759991204214146667862479997155668889999--
Q ss_pred HHHHHHHHCCHH-HHHHHHHCCCCCC
Q ss_conf 999999979859-9999876788877
Q gi|254781112|r 242 EILCAIHLDGTY-KKIFDRYFDKNII 266 (274)
Q Consensus 242 ~~l~~l~~~G~~-~~I~~kw~g~d~~ 266 (274)
|.+..+|.+. .-|.++|=|.-++
T Consensus 243 --lv~a~qs~evk~~i~k~y~G~~vP 266 (268)
T COG1464 243 --LVEAYQSDEVKAFIEKKYKGAVVP 266 (268)
T ss_pred --HHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf --999974999999999972887566
No 40
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=4.8e-05 Score=50.91 Aligned_cols=203 Identities=16% Similarity=0.114 Sum_probs=108.3
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHH--HHHHHHHCCCCCCC---HH---
Q ss_conf 88589589996289987248704699848898852167899762998555668988--98864310322110---00---
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVS--GLITGLDTNRYDVL---VN--- 108 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~--~~~~~l~~g~~D~~---~~--- 108 (274)
+.++++|+||.-. |+ + + .+..+|+.++.+.-|++++.+..-=. =...++.+|++|+. .|
T Consensus 29 ~~~~~~I~VgsK~----~t--E----~---~IL~~m~~~lle~~~~kv~~~~~lG~t~v~~~Al~~G~IDiYpEYTGt~~ 95 (300)
T COG1732 29 ASAAKTIVVGSKI----FT--E----Q---YILGNILKQLLEKNGIKVEDKTGLGGTAVVRNALKSGDIDIYPEYTGTAL 95 (300)
T ss_pred CCCCCCEEEECCC----CC--H----H---HHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 2357887983477----83--8----8---99999999999865991454168885299999997598776854323145
Q ss_pred --CCC-------CHHH---------HH--HHCCCCCC-CCCCCCCCCCCCC---CCCCCCCCCCC----CCEEEECCCH-
Q ss_conf --036-------7567---------54--20023332-2222222211122---22111112334----3202310101-
Q gi|254781112|r 109 --VAI-------TPER---------QK--KYDFSIPY-IAHRVLLVVRSDQ---QDIRSFKDLTD----KTVAQILGTD- 159 (274)
Q Consensus 109 --~~~-------t~eR---------~~--~~~fs~p~-~~~~~~~~~~~~~---~~~~~~~dL~g----~~V~~~~g~~- 159 (274)
... +|+- ++ .+.|-.|+ +..++++.+|++. ..+++++||+. .+.|....+.
T Consensus 96 ~~~lk~~~~~~~dp~~~y~~vK~~~~k~~~l~wl~p~~~nNTyA~av~~~~A~~~~i~TiSDLak~~~~l~~g~~~eF~~ 175 (300)
T COG1732 96 FSFLKKDPPASKDPKKVYETVKKLDAKQFKLVWLKPAGFNNTYALAVRKDVAEKYNLETISDLAKHSNQLKLGADSEFAE 175 (300)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHHHCEECCCHHHHC
T ss_conf 66345676454798999999999888607978965468776058996198898819816999998665346227842313
Q ss_pred ----HHHHHHCCCCCC---EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC--CCCEEECCCCCCCCCEEEEEE
Q ss_conf ----223320134542---13368557777554432100366558999999845876--673262367768770799981
Q gi|254781112|r 160 ----LSRFAKELKSHL---VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHD--GNLFKIADRMKDNSAVAFMMR 230 (274)
Q Consensus 160 ----~~~~l~~~~~~~---~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 230 (274)
+..+.+.++.+. +..-+.-..++++.+|.+|++.+-..-+ .+...... .+. .-..++... +..++
T Consensus 176 R~DG~~~l~k~Yg~~~~~~~~~m~~gl~y~Al~~g~~d~~~~YsTDg--~I~~~~L~VLkDD-K~~fP~Y~~---apvvr 249 (300)
T COG1732 176 RADGLPALQKAYGFDFKPDLRTMDGGLTYQALKNGTVDAADAYSTDG--RIAAYGLKVLKDD-KGFFPPYQA---APVVR 249 (300)
T ss_pred CCCCCHHHHHHHCCCCCCCCEECCCHHHHHHHHCCCCCEEEECCCCC--CCCCCCCEEEECC-CCCCCCCCC---CCEEC
T ss_conf 65122899998487668874433815899998749977676314552--2122685797068-767998765---64021
Q ss_pred ----CCCHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf ----89989999999999999979859999987
Q gi|254781112|r 231 ----KGNNKLTRSINEILCAIHLDGTYKKIFDR 259 (274)
Q Consensus 231 ----k~~~~L~~~in~~l~~l~~~G~~~~I~~k 259 (274)
+++|+|...+|+-..++..+ +++++--+
T Consensus 250 e~vlk~~Pel~~~l~~l~~kid~~-tMq~LNy~ 281 (300)
T COG1732 250 EEVLKKHPELKTILNKLSGKIDTE-TMQALNYR 281 (300)
T ss_pred HHHHHHCHHHHHHHHHHHCCCCHH-HHHHHHHH
T ss_conf 877767988999998875458999-99998777
No 41
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=97.55 E-value=0.00045 Score=44.86 Aligned_cols=180 Identities=17% Similarity=0.217 Sum_probs=116.0
Q ss_pred EEEEEHHHHHHHCCCCCCCCC--C-CHHHHHHHHHCCCCCCCHHCCCCHHH---HH-HHCCC----CCCCCCCCCCCCCC
Q ss_conf 885216789976299855566--8-98898864310322110000367567---54-20023----33222222222111
Q gi|254781112|r 68 FDIDLIKEVAHRLNLKVEFFE--T-AVSGLITGLDTNRYDVLVNVAITPER---QK-KYDFS----IPYIAHRVLLVVRS 136 (274)
Q Consensus 68 ~~~dl~~~i~~~lg~~~~~~~--~-~~~~~~~~l~~g~~D~~~~~~~t~eR---~~-~~~fs----~p~~~~~~~~~~~~ 136 (274)
-..|+++...++.|.+|.+.. . .|..-- .++.|+++|.+-..-. +. .-.|| .|+|.-+..+++++
T Consensus 34 aL~~vA~~~~ektg~kVnvt~GPq~tW~~kA----kknADilfgaseqsalaia~~~~~~fs~~~i~ply~R~aiIlvkk 109 (252)
T COG4588 34 ALKDVAKKYEEKTGIKVNVTAGPQATWNEKA----KKNADILFGASEQSALAIAEDHKDSFSEKNIQPLYLRPAIILVKK 109 (252)
T ss_pred HHHHHHHHHHHHHCEEEEEECCCCCHHHHHH----HCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEECEEEEECC
T ss_conf 8999999987874807999418861044564----136745641648889999985633355202531354021799627
Q ss_pred CCC-CCCCCCCCC--CCCEEEECC--------C-HHHHHHHC---------CCCCCEEE-CCHHHHHHHHHH-HHHHCCC
Q ss_conf 222-211111233--432023101--------0-12233201---------34542133-685577775544-3210036
Q gi|254781112|r 137 DQQ-DIRSFKDLT--DKTVAQILG--------T-DLSRFAKE---------LKSHLVFS-HNFEQSLQLLLS-KRTDATM 193 (274)
Q Consensus 137 ~~~-~~~~~~dL~--g~~V~~~~g--------~-~~~~~l~~---------~~~~~~~~-~~~~~~~~~l~~-grvD~~~ 193 (274)
+++ .|+.++||- |-+|.|..| + .+|..+-+ ...+++.| ++.-.+.+++.+ -.+|+++
T Consensus 110 gNPknIk~~eDll~~gi~ivV~dGaG~sntsgtgvwED~agr~~~ie~v~afR~NI~~fapnSgaArkaf~~~~~aDawI 189 (252)
T COG4588 110 GNPKNIKGFEDLLKPGIGIVVNDGAGVSNTSGTGVWEDIAGRKGNIETVAAFRKNIVAFAPNSGAARKAFENQPDADAWI 189 (252)
T ss_pred CCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCEEHHHHHCCCCCHHHHHHHHHCEEEECCCCCHHHHHHHCCCCCCEEE
T ss_conf 99544456888705786299837976447777220486541011488999988523897468704899985499985588
Q ss_pred CCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 655899999984587667326236776877079998189-9899999999999999798599999876
Q gi|254781112|r 194 IPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274)
.-. .|...+|.....+.+.....-...+.++..++ +++-++.++- ..|-+-++|++||
T Consensus 190 tW~----dWa~snpdig~~v~~~~d~vIyRd~nv~~~~~a~~ea~~F~dy-----l~S~EAq~ifkky 248 (252)
T COG4588 190 TWA----DWAKSNPDIGDAVEIEKDYVIYRDFNVALAKDANKEARDFADY-----LQSDEAQKIFKKY 248 (252)
T ss_pred EEC----CHHHHCCCHHCEEECCCCEEEEEECCEEECCCCCHHHHHHHHH-----HHHHHHHHHHHHH
T ss_conf 701----3233098501004516661775402034368999789999999-----7217789999860
No 42
>pfam03401 Bug Tripartite tricarboxylate transporter family receptor. These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. This family, formerly known as Bug - Bordetella uptake gene (bug) product - is a family of bacterial tripartite tricarboxylate receptors of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. The TctABC system has been characterized in S. typhimurium, and TctC is the extracytoplasmic tricarboxylate-binding receptor which binds the transporters TctA and TctB, two integral membrane proteins. Complete three-component systems are found only in bacteria.
Probab=97.31 E-value=0.0012 Score=42.19 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=89.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-------C-CCEEEE-CCCHHH----HHHHCCCC--CCEEECCHHHHHHHHHHH
Q ss_conf 33222222222111222211111233-------4-320231-010122----33201345--421336855777755443
Q gi|254781112|r 123 IPYIAHRVLLVVRSDQQDIRSFKDLT-------D-KTVAQI-LGTDLS----RFAKELKS--HLVFSHNFEQSLQLLLSK 187 (274)
Q Consensus 123 ~p~~~~~~~~~~~~~~~~~~~~~dL~-------g-~~V~~~-~g~~~~----~~l~~~~~--~~~~~~~~~~~~~~l~~g 187 (274)
..+...+.+++++++++ +++++||. | .++|.. .|+..+ .+.+..+. +.+.|+...+.+.+|..|
T Consensus 73 a~~~~~~~~l~v~~dsp-~~t~~dli~~ak~~Pg~~~~g~~G~gs~~hl~~~~l~~~~G~~~~~Vpy~G~~~~~~allgG 151 (274)
T pfam03401 73 SLLATSPMVLVVPADSP-FKTLQELVAYAKANPGKLTFASAGIGTSNHLAGELLASKAGVQLSHVPYKGSSPALQDLLGG 151 (274)
T ss_pred HHHHCCCEEEEECCCCC-CCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 86501635889779997-56899999999848996587327888631899999999709964883467832668998678
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCC------------EEECCC-----CCCCCCEEEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf 2100366558999999845876673------------262367-----76877079998189-98999999999999997
Q gi|254781112|r 188 RTDATMIPDIPFFNFLERRPHDGNL------------FKIADR-----MKDNSAVAFMMRKG-NNKLTRSINEILCAIHL 249 (274)
Q Consensus 188 rvD~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~ 249 (274)
++|+.+........+++.-...... ++...+ ......+++..+++ .++.++.+++++.++.+
T Consensus 152 ~vd~~~~~~~~~~~~v~~G~lr~Lav~~~~R~~~~PdVPT~~E~G~~~~~~~~w~g~~ap~gtP~~~~~~l~~a~~~~~~ 231 (274)
T pfam03401 152 RVDMMIDSLTSTAPYIKAGKLRALAVTSPKRSPQLPDVPTVAELGLKGFEAGVWFGLVAPKGTPPAVVEKLNDAIKKALK 231 (274)
T ss_pred EEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 44599835132044541798259999757567544899976884878714788888763498899999999999999974
Q ss_pred CCHHHHHHHHHCCCCC
Q ss_conf 9859999987678887
Q gi|254781112|r 250 DGTYKKIFDRYFDKNI 265 (274)
Q Consensus 250 ~G~~~~I~~kw~g~d~ 265 (274)
|.++.+-+++ .|..+
T Consensus 232 dpe~~~~~~~-~g~~~ 246 (274)
T pfam03401 232 DPEVVERLAN-LGMEP 246 (274)
T ss_pred CHHHHHHHHH-CCCCC
T ss_conf 9999999997-78957
No 43
>pfam03180 Lipoprotein_9 NLPA lipoprotein. This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to pfam00497 which are solute binding proteins.
Probab=97.08 E-value=0.00065 Score=43.87 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=103.0
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCH--HCCC----CHHH
Q ss_conf 89996289987248704699848898852167899762998555668-988988643103221100--0036----7567
Q gi|254781112|r 43 LRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLV--NVAI----TPER 115 (274)
Q Consensus 43 l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~--~~~~----t~eR 115 (274)
||||+.+. |+. +. .+.++..+++-|++++++.. +|..--.+|.+|++|+-. -..+ ++++
T Consensus 1 lkvG~~~~--p~~--------~i----~~~v~~~~~~~Gi~veiv~F~Dy~~pN~AL~~GeIDaN~fQH~~yl~~~n~~~ 66 (236)
T pfam03180 1 LKVGATPG--PHA--------EV----LEVAKPLAKKKGLDLEIVEFTDYVQPNTALADGEIDANAFQHLPYLDQFNKEG 66 (236)
T ss_pred CEEEECCC--CHH--------HH----HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCHHHHCCHHHHHHHHHHC
T ss_conf 98964389--769--------99----99999999964987999981686455079778995524443899999999977
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCH-HHH---HHHCCCC---------------------
Q ss_conf 542002333222222222111222211111233-43202310101-223---3201345---------------------
Q gi|254781112|r 116 QKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTD-LSR---FAKELKS--------------------- 169 (274)
Q Consensus 116 ~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~-~~~---~l~~~~~--------------------- 169 (274)
...+.--.+.+..+.+++.+ .+++++||+ |-+|++..+.+ ..+ ++++.+.
T Consensus 67 g~~L~~v~~~~~~p~glYS~----k~ksl~~lp~Ga~IaIpnD~sN~~RAL~lL~~aGLI~Lk~~~~~~~t~~DI~~Npk 142 (236)
T pfam03180 67 GLDLVAVGNTHVEPIGLYSK----KYKSLSELPDGATIAVPNDPSNEGRALLLLEKAGLIKLKDGAGLLATVKDITENPK 142 (236)
T ss_pred CCCEEEEEEEEECCEEEEEC----CCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHCCC
T ss_conf 99679963046723795433----76887585799989815884429999999998898897689998789888972867
Q ss_pred --CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC-EEECCCCCCCCCEEEEEECCCH--HHHHHHHHHH
Q ss_conf --4213368557777554432100366558999999845876673-2623677687707999818998--9999999999
Q gi|254781112|r 170 --HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNL-FKIADRMKDNSAVAFMMRKGNN--KLTRSINEIL 244 (274)
Q Consensus 170 --~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~--~L~~~in~~l 244 (274)
++++. +..+..+.| ..+|++++... |....+..... .........+....+++++++. +... .|
T Consensus 143 ~l~~~ev-~a~ql~~~l--~dvD~avin~n----~a~~agl~p~~~~l~~e~~~~~y~n~ivvr~~~~d~~~ik----~l 211 (236)
T pfam03180 143 NLKIKEL-EAAQLPRAL--DDVDAAVINTN----YALQAGLDPKKDALFEEDKDSPYVNIIVVREDDKDDPAVK----KL 211 (236)
T ss_pred CCEEEEE-CHHHHHHHC--CCCCEEEECHH----HHHHCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHH----HH
T ss_conf 7669991-677755421--66578998656----7988794921213314788998379999817776999999----99
Q ss_pred HHHHHCCHHHHHHHHHCCCCC
Q ss_conf 999979859999987678887
Q gi|254781112|r 245 CAIHLDGTYKKIFDRYFDKNI 265 (274)
Q Consensus 245 ~~l~~~G~~~~I~~kw~g~d~ 265 (274)
.+..+|.++++.+++-|+-.+
T Consensus 212 ~e~~~s~~vk~~i~~~y~G~~ 232 (236)
T pfam03180 212 VKAYQSEEVKAFIEKKYGGAV 232 (236)
T ss_pred HHHHCCHHHHHHHHHHCCCCE
T ss_conf 999879999999998869944
No 44
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=97.07 E-value=0.02 Score=34.69 Aligned_cols=177 Identities=10% Similarity=0.080 Sum_probs=104.7
Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHH
Q ss_conf 8589589996289987248704699848898852167899762-998555668988988643103221100-00367567
Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPER 115 (274)
Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR 115 (274)
.++|+|+||+.+...- .+..+++....++. ++++++...+...+++.|.+|++|+.. +....++.
T Consensus 92 ~~~g~lrI~~~~s~~~-------------~~lp~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~~ 158 (307)
T CHL00180 92 LQGGTLIIGASQTTGT-------------YLMPRLIGLFRQKYPQIAVQLQVHSTRRIAWSVANGQIDLAIIGGEVPTEL 158 (307)
T ss_pred CCCCCCCCCCCCHHHH-------------HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 1258601010406666-------------643588999999888997278977999999999879800999757788666
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEE-EECCCHHH----HHHHCCCCC------CEEECCHHHH
Q ss_conf 5420023332222222221112222----1111123343202-31010122----332013454------2133685577
Q gi|254781112|r 116 QKKYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVA-QILGTDLS----RFAKELKSH------LVFSHNFEQS 180 (274)
Q Consensus 116 ~~~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~-~~~g~~~~----~~l~~~~~~------~~~~~~~~~~ 180 (274)
...+. ..++.....++++.++.+. .-+++||.+.+.. ...++... .+++..+.+ ..++++.+..
T Consensus 159 ~~~l~-~~~l~~~~~~lv~~~~hpla~~~~v~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (307)
T CHL00180 159 KDNLQ-VTPYAEDELALILPKSHPFAKLKKIQKEDLYRLRFIALDSQSTIRKVIDNILIQNGIDSSRFKIEMELNSIEAI 237 (307)
T ss_pred CCCEE-EEEEECCCEEEEECCCCHHHCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH
T ss_conf 78549-99943242799973898022399999999817984871799968999999999769984554279997809999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCC
Q ss_conf 77554432100366558999999845876673262-367768770799981899
Q gi|254781112|r 181 LQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 181 ~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~ 233 (274)
.+++.+|-.= .+.+.......+.. +....+ ...+.....+++..+++.
T Consensus 238 ~~~v~~g~Gi-a~lP~~~v~~~~~~----g~l~~~~~~~~~~~r~i~lv~~~~r 286 (307)
T CHL00180 238 KNAVQSGLGA-AFVSVSAIEKELEL----GTLHWAKIENITIKRTLSIITNPNR 286 (307)
T ss_pred HHHHHHCCEE-EECCHHHHHHHHHC----CCEEEEECCCCCCEEEEEEEEECCC
T ss_conf 9999939949-98259999989877----9889997899985049999997959
No 45
>PRK09791 putative DNA-binding transcriptional regulator; Provisional
Probab=97.05 E-value=0.0073 Score=37.40 Aligned_cols=190 Identities=14% Similarity=0.198 Sum_probs=108.5
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
..|+|+||+.+.... .+..+++....++- ++++++....+..+++.|.+|++|+..+..+......
T Consensus 93 ~~G~l~Ig~~~~~~~-------------~~lp~~l~~f~~~~P~v~i~i~~~~~~~~~~~l~~g~~D~~i~~~~~~~~~~ 159 (302)
T PRK09791 93 LAGQINIGMGASISR-------------SLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDH 159 (302)
T ss_pred CCCEEEEEECHHHHH-------------HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 663399986268898-------------7119999999998879779999899999999998799778996567887887
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEEEEC--CCHH---HHHHHCCCC---CCEEECCHHHHHHHHHHH
Q ss_conf 20023332222222221112222--1111123343202310--1012---233201345---421336855777755443
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD--IRSFKDLTDKTVAQIL--GTDL---SRFAKELKS---HLVFSHNFEQSLQLLLSK 187 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~--~~~~~dL~g~~V~~~~--g~~~---~~~l~~~~~---~~~~~~~~~~~~~~l~~g 187 (274)
.+. ..|++..+..++++++.+. ..+++||.+....... |... .++..+.+. ......+......++..|
T Consensus 160 ~l~-~~~l~~~~~~~v~~~~hpl~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~lv~~g 238 (302)
T PRK09791 160 EFT-FEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVCETFSACISLVAKS 238 (302)
T ss_pred CEE-EEEEEEEEEEEEECCCCCCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHC
T ss_conf 647-9997740159998389843579899998479938757999799999999996799985699999299999999978
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 2100366558999999845876673262-367768770799981899899999999999999
Q gi|254781112|r 188 RTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGNNKLTRSINEILCAIH 248 (274)
Q Consensus 188 rvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~ 248 (274)
..= .+.+...+...+.... ...+ ...+.....++++.+++.. +-...+..|..++
T Consensus 239 ~gv-~ilp~~~~~~~~~~~~----lv~lpl~~~~~~~~~~lv~r~~~~-~spa~~~fi~~lr 294 (302)
T PRK09791 239 DFL-SILPEEMGCDPLHGQG----LVMLPVSEILPKAAYYLIQRRDSR-QTPLTASLITQFR 294 (302)
T ss_pred CEE-EEECHHHHHHHHHCCC----EEEEECCCCCCCEEEEEEEECCCC-CCHHHHHHHHHHH
T ss_conf 967-9631999987874899----999979998860089999989098-8999999999999
No 46
>pfam03466 LysR_substrate LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.
Probab=96.99 E-value=0.0024 Score=40.32 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=105.8
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
.+|+|+||+.+.... .+..+++....++. ++++++...+..++.+.+++|++|+.......+. .
T Consensus 4 ~~G~i~I~~~~~~~~-------------~~lp~~l~~f~~~~P~i~i~i~~~~~~~i~~~l~~g~~Di~i~~~~~~~--~ 68 (209)
T pfam03466 4 PRGRLRIGAPPTFAA-------------YLLPPLLARFRERYPDVELELREGDSEELLDLLAEGELDLAIRRGPPDD--P 68 (209)
T ss_pred CCEEEEEEEEHHHHH-------------HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEEEECCCCCC--C
T ss_conf 878999993889999-------------9999999999998889289999898488999998698148873178999--9
Q ss_pred HHCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEEEC-CCHH----HHHHHCCCC---CCEEECCHHHHHHHHH
Q ss_conf 2002333222222222111222----21111123343202310-1012----233201345---4213368557777554
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQ----DIRSFKDLTDKTVAQIL-GTDL----SRFAKELKS---HLVFSHNFEQSLQLLL 185 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~----~~~~~~dL~g~~V~~~~-g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~ 185 (274)
.+ -+.+.+....++++.++.+ ..-+++||.+.+..... +... +++.+..+. ....+++...+..++.
T Consensus 69 ~~-~~~~l~~~~~~~~~s~~~~l~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 147 (209)
T pfam03466 69 GL-EARPLFEEPLVLVAPPDHPLAAGEPVSLEDLADEPLILLEPGSGLRDLVDRALERAGLRPRVALEVNSLEALLAAVA 147 (209)
T ss_pred CE-EEEEEEEEEEEEEECCCCHHHCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 80-89997624136553367055428975435514665798569987137998778764876302467478799999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEEEECCC
Q ss_conf 4321003665589999998458766732623-67768770799981899
Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~ 233 (274)
+|..= .+.+...+..+... .....+. ........+++..+++.
T Consensus 148 ~g~Gi-~~lp~~~~~~~~~~----~~L~~i~~~~~~~~~~~~li~~~~~ 191 (209)
T pfam03466 148 AGLGI-ALLPRSAVARELAD----GRLVVLPLPDPPLPRPIYLVYRKGR 191 (209)
T ss_pred HCCEE-EECCHHHHHHHHHC----CCEEEEECCCCCCCCEEEEEEECCC
T ss_conf 49999-99139999988758----9989995888887447999998949
No 47
>COG4663 FcbT1 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.94 E-value=0.012 Score=36.03 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=52.7
Q ss_pred HHHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCC------CCHHHHHHHHHCCCC
Q ss_conf 84178878858958999628998724870469984889885216789976299855566------898898864310322
Q gi|254781112|r 30 FVIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFE------TAVSGLITGLDTNRY 103 (274)
Q Consensus 30 ~~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~------~~~~~~~~~l~~g~~ 103 (274)
..+.++-++..+++|.-...+||+-- ...-|...++++.+++..|=++++++ +|--+.++++++|.+
T Consensus 24 ~~a~~~~a~~~p~~~wrltsswpksl-------dt~~g~a~~~Ak~v~~mT~G~fqIqvfaAgeivpglq~~DaV~aGtv 96 (363)
T COG4663 24 GLATPAIAQENPKVRWRLTSSWPKSL-------DTIYGGAEDMAKAVAEMTGGNFQIQVFAAGEIVPGLQALDAVKAGTV 96 (363)
T ss_pred HHCCCHHHCCCCCEEEEEECCCCCCC-------CHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCC
T ss_conf 31460233248835899832688875-------31214499999999985089448997357771666025768752863
Q ss_pred CCCHH
Q ss_conf 11000
Q gi|254781112|r 104 DVLVN 108 (274)
Q Consensus 104 D~~~~ 108 (274)
|+.-+
T Consensus 97 e~gHt 101 (363)
T COG4663 97 EMGHT 101 (363)
T ss_pred CCCCE
T ss_conf 13440
No 48
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional
Probab=96.84 E-value=0.014 Score=35.56 Aligned_cols=188 Identities=16% Similarity=0.239 Sum_probs=106.8
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH
Q ss_conf 89589996289987248704699848898852167899762-99855566898898864310322110000367567542
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274)
.|.|+||+.+...++ +..+++..+.++. ++++++...+...+++.|.+|++|+...... ++. ..
T Consensus 90 ~G~lrig~~~~~~~~-------------llp~~l~~f~~~~P~v~i~l~~~~~~~l~~~l~~g~~D~~i~~~~-~~~-~~ 154 (305)
T PRK11151 90 SGPLHIGLIPTVGPY-------------LLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCAILALV-KES-EA 154 (305)
T ss_pred CCEEEEEEHHHHHHH-------------CCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEECC-CCC-CC
T ss_conf 641431102223332-------------382779998623898379999887577787865788537998458-899-87
Q ss_pred HCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEE-CCCHHH----HHHHCCC---CCCEEECCHHHHHHHHHH
Q ss_conf 0023332222222221112222----111112334320231-010122----3320134---542133685577775544
Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQI-LGTDLS----RFAKELK---SHLVFSHNFEQSLQLLLS 186 (274)
Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~-~g~~~~----~~l~~~~---~~~~~~~~~~~~~~~l~~ 186 (274)
+. ..|++..+.+++++++.+. --+++||.+..+... .|+... .+....+ .......+.+....++..
T Consensus 155 ~~-~~~l~~e~l~lv~~~~hpla~~~~i~l~~L~~~~~i~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~i~~lV~~ 233 (305)
T PRK11151 155 FI-EVPLFDEPMLLAVYEDHPWANRDRVPMSDLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAA 233 (305)
T ss_pred CE-EEEECCCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 26-87620462799995898433699989999769988996899859999999999779998738999447999999992
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 32100366558999999845876673262-3677687707999818998999999999999997
Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHL 249 (274)
Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~ 249 (274)
|..= .+.+......... ......+ ...+.....++++.+++.+ |.......++.+++
T Consensus 234 G~Gv-~ilp~~~v~~~~~----~~~l~~~pl~~~~~~r~i~lv~r~~~~-ls~~~~~~~e~ir~ 291 (305)
T PRK11151 234 GSGI-TLLPALAVPNERK----RDGVCYLPCIKPEPRRTIGLVYRPGSP-LRSRYEQLAEAIRA 291 (305)
T ss_pred CCCE-EECCHHHHHHHCC----CCCEEEEECCCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHH
T ss_conf 9968-9835999862212----698899988899973699999989098-78999999999999
No 49
>PRK12684 transcriptional regulator CysB-like protein; Reviewed
Probab=96.84 E-value=0.021 Score=34.56 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=113.5
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
.+|.|+||+.+.... .+.++++....++. ++++++...+..++.+.|.+|++|+......-+. ..
T Consensus 91 ~~G~l~ig~~~s~~~-------------~~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~-~~ 156 (313)
T PRK12684 91 DQGNLTIATTHTQAR-------------YALPAAIAEFKKRYPKVRLSILQGSPTQIAEMVIHDQADLAIATEAIAD-YK 156 (313)
T ss_pred CCCEEECCHHHHHHH-------------HCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEEECCCCCCC-CC
T ss_conf 775141102455575-------------1594999999844898089997178899999997799665504357777-78
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE-ECCCHH----HHHHHCCCC--C-CEEECCHHHHHHHHH
Q ss_conf 20023332222222221112222----11111233432023-101012----233201345--4-213368557777554
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQ-ILGTDL----SRFAKELKS--H-LVFSHNFEQSLQLLL 185 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~-~~g~~~----~~~l~~~~~--~-~~~~~~~~~~~~~l~ 185 (274)
.+ -+.|.+....++++..+.+. .-+++||.+..+.. ..|+.. +......+. + +.+..+.+....++.
T Consensus 157 ~l-~~~~l~~~~~~~v~~~~hpla~~~~v~l~dL~~~p~I~~~~~~~~r~~i~~~~~~~g~~p~~~~e~~~~~~i~~~V~ 235 (313)
T PRK12684 157 EL-VSLPCYQWNHAVVVPPDHPLLERKPLTLEDLAQYPLITYDDAFAGRSKINKAFALRGLKPDIVLEAIDADVIKTYVE 235 (313)
T ss_pred CE-EEEEEEECCEEEEECCCCCCCCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 73-89980322168995389854469999999985999896289985899999999977998747999997999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 432100366558999999845876673262-367768770799981899899999999999999798599999876788
Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
.|-.= .+.+..... .. .+.....+ ...+.....++++.+|+.. |-......|+-+++. ==.++.++|+.-
T Consensus 236 ~GlGi-~ilP~~a~~----~~-~~~~L~~lp~~~~~~~~~~~v~~~k~~~-ls~~~r~FIe~l~e~-l~r~~~~~~~~~ 306 (313)
T PRK12684 236 LGLGV-GIVADMAFD----PE-RDRNLRAIPAGHLFGSNVTRVALKQGAY-LRGYVYTFIELFSPT-LNRKLVEQALKG 306 (313)
T ss_pred HCCCH-HHHHHHHHC----HH-HCCCEEEEECCCCCCCEEEEEEEECCCC-CCHHHHHHHHHHHHH-CCHHHHHHHHHC
T ss_conf 59857-255999846----76-3898799978467766059999979886-689999999998746-598999999837
No 50
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=96.84 E-value=0.0094 Score=36.69 Aligned_cols=171 Identities=16% Similarity=0.227 Sum_probs=102.9
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
.+|.|+||+.+.+.- .+..+++..+.++. ++++++...+...+.+.|.+|++|+..... +.+..
T Consensus 89 ~~G~l~ig~~~~~~~-------------~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~--~~~~~ 153 (292)
T PRK11242 89 SRGSLRLAMTPTFTA-------------YLIGPLIDAFHARYPGITLTIREMPQERIEALLADDELDVGIAFA--PVHSP 153 (292)
T ss_pred CCCEEEEECHHHHHH-------------HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEEEC--CCCCC
T ss_conf 776586302457788-------------873899888886488973489976889999998679855799836--88887
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCEEEECC-CHH----HHHHHCCCCC---CEEECCHHHHHHHH
Q ss_conf 20023332222222221112222-----11111233432023101-012----2332013454---21336855777755
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD-----IRSFKDLTDKTVAQILG-TDL----SRFAKELKSH---LVFSHNFEQSLQLL 184 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~-----~~~~~dL~g~~V~~~~g-~~~----~~~l~~~~~~---~~~~~~~~~~~~~l 184 (274)
.+ -+.|++....++++.++.+. .-+++||.+........ +.. +.+.++.+.+ ...+++......++
T Consensus 154 ~l-~~~~l~~~~~~~v~~~~h~la~~~~~is~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~V 232 (292)
T PRK11242 154 EI-EAQPLFTETLALVVGRTHPLAARRKPLTLDELADEPLVLLSAEFATREQIDRYFRRHGITPRVAIEANSISAVLEIV 232 (292)
T ss_pred CC-EEEEECCCEEEEEEECCCHHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH
T ss_conf 72-56542045079999089804227999999998189989967998579999999997699985367538899999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCC
Q ss_conf 4432100366558999999845876673262-367768770799981899
Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~ 233 (274)
.+|..= .+.+...+ ...+ ....+ ...+.....++++.+|+.
T Consensus 233 ~~g~Gi-~ilP~~~~----~~~~---~l~~i~l~~~~~~r~i~lv~~k~~ 274 (292)
T PRK11242 233 RRGRLA-TLLPAAIA----REHD---DLCAVALDPPLPQRTAALLRRKGA 274 (292)
T ss_pred HHCCEE-EEEHHHHH----HHCC---CEEEEECCCCCCEEEEEEEEECCC
T ss_conf 979969-97028986----0089---989998989987039999998939
No 51
>PRK12683 transcriptional regulator CysB-like protein; Reviewed
Probab=96.79 E-value=0.044 Score=32.57 Aligned_cols=174 Identities=11% Similarity=0.147 Sum_probs=101.7
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
..|.|+||+......| +.+.++....++. ++++++...+..++++.|.+|++|+...... ..+..
T Consensus 91 ~~G~l~Ig~~~~~~~~-------------~lp~~l~~f~~~~P~v~i~l~~~~~~~~~~~L~~g~~Dl~i~~~~-~~~~~ 156 (308)
T PRK12683 91 DSGRLTVATTHTQARY-------------ALPKVVRQFTEVFPKVHLALRQGSPQEIAEMLLNGEADIGIATEA-LDREP 156 (308)
T ss_pred CCCEEEECCCCHHHHH-------------CCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEECCCC-CCCCC
T ss_conf 7762420013201120-------------168466899987899669996078699999997799778806667-78887
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEE-CCCHH----HHHHHCCCC---CCEEECCHHHHHHHHH
Q ss_conf 20023332222222221112222----111112334320231-01012----233201345---4213368557777554
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQI-LGTDL----SRFAKELKS---HLVFSHNFEQSLQLLL 185 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~-~g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~ 185 (274)
.+ .+.|++....++++.++.+. .-+++||.+..+... .|+.. +.+..+.+. ...+..+.+....++.
T Consensus 157 ~l-~~~~l~~~~~~lv~~~~hpla~~~~v~l~dl~~~p~I~~~~~~~~r~~i~~~~~~~g~~p~~~~e~~~~~~i~~~V~ 235 (308)
T PRK12683 157 DL-VSFPYYSWHHVVVVPKGHPLTGRENLTLEALAEYPIITYDQGFTGRSHIDQAFAEAGAVPDIVLTALDADVIKTYVE 235 (308)
T ss_pred CC-EEEEECCCCEEEEECCCCCCCCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 71-68761245158984699953369999999985999896189982999999999977999857999998999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCC
Q ss_conf 432100366558999999845876673262-367768770799981899
Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~ 233 (274)
.|-.=+ +.+....... .... .+.+ ..++.....++++.+|+.
T Consensus 236 ~g~Gi~-ilp~~~~~~~----~~~~-lv~l~~~~~~~~~~~~i~~rk~~ 278 (308)
T PRK12683 236 LGMGVG-IVAAMAYDPQ----RDTG-LVALDTQHLFEANTTRVALRRGA 278 (308)
T ss_pred HCCCHH-HHHHHHHHHH----HCCC-EEEEECCCCCCCCEEEEEECCCC
T ss_conf 798470-7899998788----6099-79998978876617999990968
No 52
>PRK12679 cbl transcriptional regulator Cbl; Reviewed
Probab=96.77 E-value=0.045 Score=32.52 Aligned_cols=189 Identities=10% Similarity=0.095 Sum_probs=113.1
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
..|.|+||+.....+| +.++++....++. +++++++..+...+.+.|.+|++|+...... .....
T Consensus 91 ~~G~l~Ig~~~t~a~~-------------~LP~~l~~F~~~~P~v~l~l~~~~~~~i~~~l~~g~~Dl~i~~~~-~~~~p 156 (316)
T PRK12679 91 TSGVLTIATTHTQARY-------------SLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASER-LSNDP 156 (316)
T ss_pred CCCEEEEEEEECCHHC-------------CCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEECCCC-CCCCC
T ss_conf 7764999985032010-------------381999999986899538998478799999998799885222467-78997
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCEEE-ECCCHH----HHHHHCCCC--C-CEEECCHHHHHHHHH
Q ss_conf 200233322222222211122221----1111233432023-101012----233201345--4-213368557777554
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDI----RSFKDLTDKTVAQ-ILGTDL----SRFAKELKS--H-LVFSHNFEQSLQLLL 185 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~----~~~~dL~g~~V~~-~~g~~~----~~~l~~~~~--~-~~~~~~~~~~~~~l~ 185 (274)
-..+.|++.....++++.+++.. -+++||.+..+.. ..|+.. +++..+.+. + +.+..+.+....++.
T Consensus 157 -~l~~~p~~~~~~~lvvp~~HpLa~~~~vsl~~L~~~plI~~~~g~~~R~~id~~f~~~G~~p~i~~e~~~~~~i~~~V~ 235 (316)
T PRK12679 157 -QLVAFPWFRWHHSLLVPLDHPLTQITPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVA 235 (316)
T ss_pred -CCEEEEEEECCEEEEECCCCCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf -6079980553413560189951248998999987999895089984999999999977999977999998999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 432100366558999999845876673262-3677687707999818998999999999999997
Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHL 249 (274)
Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~ 249 (274)
.|-.=+ +.+.... ....+.....+ ..........+++++|+.. |....-..|.-...
T Consensus 236 ~GlGva-ilp~~a~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~-l~~~~~~Fi~~~~~ 293 (316)
T PRK12679 236 LGLGIG-LVAEQSS-----GEQEEKNLIRLDTRHLFDANTVWLGLKRGQL-QRNYVWRFLELCNA 293 (316)
T ss_pred HCCCEE-ECHHHHC-----CCCCCCCEEEECCCCCCCCCEEEEEEECCCC-CHHHHHHHHHHHHC
T ss_conf 899099-7014450-----7546898899326346766538999967875-56999999997520
No 53
>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=96.73 E-value=0.004 Score=38.98 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=91.1
Q ss_pred EEEHHHHHHHCCCCCCCCCCCH-HHHHHHHHCCCCCCCHH-CCCCHH------HHH--HHCCCCCC-CCCCCCCCCCCCC
Q ss_conf 5216789976299855566898-89886431032211000-036756------754--20023332-2222222211122
Q gi|254781112|r 70 IDLIKEVAHRLNLKVEFFETAV-SGLITGLDTNRYDVLVN-VAITPE------RQK--KYDFSIPY-IAHRVLLVVRSDQ 138 (274)
Q Consensus 70 ~dl~~~i~~~lg~~~~~~~~~~-~~~~~~l~~g~~D~~~~-~~~t~e------R~~--~~~fs~p~-~~~~~~~~~~~~~ 138 (274)
..++..+.+.+|++++.+...- .-++.+|.+|++|+... ...+-. -.+ ......|. ......+.+++..
T Consensus 17 a~i~~~~Le~~G~~V~~~~~~~~~~~~~al~~G~iDi~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vp~~~ 96 (256)
T pfam04069 17 ANIAAQLLEALGYVVELVGLGSTAVLFAALASGDIDLYPEEWTGTTYEAYKKAVEEKLGLLVLGPLGAGNTYGLAVPKYV 96 (256)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECHHH
T ss_conf 99999999976981698547870899999976997586333066257999987514687386135777875899985888
Q ss_pred ---CCCCCCCCCCCC----------CEEEECCCHHH----HHHHCCCCCCE-EECC-----HHHHHHHHHHHHHHCCCCC
Q ss_conf ---221111123343----------20231010122----33201345421-3368-----5577775544321003665
Q gi|254781112|r 139 ---QDIRSFKDLTDK----------TVAQILGTDLS----RFAKELKSHLV-FSHN-----FEQSLQLLLSKRTDATMIP 195 (274)
Q Consensus 139 ---~~~~~~~dL~g~----------~V~~~~g~~~~----~~l~~~~~~~~-~~~~-----~~~~~~~l~~grvD~~~~~ 195 (274)
..+++++||+.. -++...|+... ..++.++.... .... ..+..+++.+|+.+++..-
T Consensus 97 a~~~~i~si~dL~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~yGl~~~~~~~~s~~~~~a~~~~A~~~g~~~v~~~w 176 (256)
T pfam04069 97 AEKPGIKSISDLAKPADDELGFKGEFIGRPDGWGCTRSTEGLLKAYGLDKYELVEGSEAAMDALLYAAIKRGEPDVVYAW 176 (256)
T ss_pred HHHCCCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 83569987999727421024888655327888540067899998639764012358555459999999984998899963
Q ss_pred HHHHHHHHHHCCCCCCCEEECCC--CC-CCCCEEEEEEC----CCHHHHHHHHH
Q ss_conf 58999999845876673262367--76-87707999818----99899999999
Q gi|254781112|r 196 DIPFFNFLERRPHDGNLFKIADR--MK-DNSAVAFMMRK----GNNKLTRSINE 242 (274)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~k----~~~~L~~~in~ 242 (274)
....... +.. ...+.++ .. .....+..+++ ++|+....+++
T Consensus 177 ~p~~~~~--~~d----l~~L~Dp~~~~~~~~~v~~v~~~~~~~~~P~~~~~l~~ 224 (256)
T pfam04069 177 TPDWMIK--KYD----LVVLEDPKGLFPPAYNVVPVVRKGFAEKHPEVAAFLNK 224 (256)
T ss_pred CCCHHHH--HCC----EEECCCCCCCCCCCCEEEEEECHHHHHHCHHHHHHHHH
T ss_conf 7616554--279----69936886457976558752104677779899999986
No 54
>pfam03480 SBP_bac_7 Bacterial extracellular solute-binding protein, family 7. This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component.
Probab=96.73 E-value=0.0012 Score=42.28 Aligned_cols=103 Identities=14% Similarity=0.020 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 21111123343202310101223320134542133685577775544321003665589999998458766732623677
Q gi|254781112|r 140 DIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRM 219 (274)
Q Consensus 140 ~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (274)
.+++++||+|++|-+..+.....+++..+...+...-. +.+.+|.+|-+|++......... . +.......+ ....
T Consensus 126 pi~~~~DlkG~KiR~~~~~~~~~~~~alGa~pv~~~~~-evy~aLq~GvvDg~~~~~~~~~~-~-~~~ev~ky~--~~~~ 200 (285)
T pfam03480 126 PINSPEDLKGLKLRVPPSPLLGEVFKALGANPTPMPFG-EVYTALQTGVVDGQENPLSNIYS-Q-KFYEVQKYL--TETN 200 (285)
T ss_pred CCCCHHHHCCCEEEECCCHHHHHHHHHCCCCCCCCCHH-HHHHHHHHCCEEEEECCCHHHHH-H-CHHHHCCEE--EECC
T ss_conf 88997996798288358679999999859974015758-89999970846267537135654-0-412113367--2256
Q ss_pred CCCCCEEEEEECC-----CHHHHHHHHHHHHHH
Q ss_conf 6877079998189-----989999999999999
Q gi|254781112|r 220 KDNSAVAFMMRKG-----NNKLTRSINEILCAI 247 (274)
Q Consensus 220 ~~~~~~~~~~~k~-----~~~L~~~in~~l~~l 247 (274)
.......+.++++ +++.+..|.++-.+.
T Consensus 201 ~~~~~~~~~~n~~~w~~L~~~~q~~i~~a~~~a 233 (285)
T pfam03480 201 HGYLDYLVVMNKDTWDSLPPDLQAILEEAAKEA 233 (285)
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 335678999249999649999999999999999
No 55
>PRK12682 transcriptional regulator CysB-like protein; Reviewed
Probab=96.18 E-value=0.1 Score=30.26 Aligned_cols=187 Identities=10% Similarity=0.165 Sum_probs=104.8
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
..|+|+||+.+....+ +.++++....++. ++++++...+...+.+.+.+|++|+..... ..+...
T Consensus 91 ~~G~lrIg~~~~~~~~-------------~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~-~~~~~~ 156 (309)
T PRK12682 91 DSGTLTIATTHTQARY-------------VLPRVVAKFRKRYPKVNLSLHQGSPDEIAQMVISGEADIGIATE-SLDDDP 156 (309)
T ss_pred CCCCCCCCCCHHHHHH-------------CCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCHHHHHC-CCCCCC
T ss_conf 7774121243133320-------------38625399998789837999837829999999769976456507-777898
Q ss_pred HHCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEEE-CCCH----HHHHHHCCCC---CCEEECCHHHHHHHHH
Q ss_conf 2002333222222222111222----2111112334320231-0101----2233201345---4213368557777554
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQ----DIRSFKDLTDKTVAQI-LGTD----LSRFAKELKS---HLVFSHNFEQSLQLLL 185 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~----~~~~~~dL~g~~V~~~-~g~~----~~~~l~~~~~---~~~~~~~~~~~~~~l~ 185 (274)
.+. ..|++....+++++++.+ ..-+++||++..+... .|+. .+.+....+. ......+.+....++.
T Consensus 157 ~l~-~~~l~~~~~~~v~~~~h~la~~~~i~~~dL~~~p~I~~~~~~~~r~~~~~~~~~~g~~p~~~~~~~~~~~~~~~v~ 235 (309)
T PRK12682 157 DLV-TLPCYDWTHAVIVPSDHPLAQKERITLEDLAEYPLITYHPGFTGRSAIDKAFAAAGLQPDIVLEAIDSDVIKTYVR 235 (309)
T ss_pred CEE-EEEEECCCEEEEECCCCHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 808-9993315236761699721149999999982899797279986799999999977999626999998999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 432100366558999999845876673262-36776877079998189989999999999999
Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGNNKLTRSINEILCAI 247 (274)
Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l 247 (274)
.|-.=+ +.+..... ... ....+.+ ......+..++++.+|+.. +-..+...|+-+
T Consensus 236 ~G~Gi~-~lp~~~~~----~~~-~~~Lv~v~~~~~~~~~~~~l~~rk~~~-l~~~~~~FId~l 291 (309)
T PRK12682 236 LGLGVG-IIAEMAYR----PDR-DGDLVALPAGHLFGPNTAWVAVKRGAY-LRNYVYDFIELL 291 (309)
T ss_pred HCCEEE-HHHHHHHH----HHH-CCCEEEEECCCCCCCCEEEEEEECCCC-CCHHHHHHHHHH
T ss_conf 599424-22899833----764-799899979887776179999969661-189999999999
No 56
>PRK12681 cysB transcriptional regulator CysB; Reviewed
Probab=96.16 E-value=0.067 Score=31.44 Aligned_cols=174 Identities=12% Similarity=0.122 Sum_probs=103.7
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
..|.|+||+......| +.++++....++. ++++++...+..++.+.+.+|++|+..... ..+...
T Consensus 91 ~~G~L~Ia~~~t~a~~-------------~LP~~i~~F~~~~P~v~l~l~~~~~~~i~~~l~~g~~DlaI~~e-~~~~~~ 156 (324)
T PRK12681 91 DKGSLYIATTHTQARY-------------ALPPVIKGFIKRYPRVSLHMHQGSPTQIAEAAAKGEADFAIATE-ALHLYD 156 (324)
T ss_pred CCCEEEEEECHHHHHH-------------HHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC-CCCCCC
T ss_conf 7634999853588887-------------72599999998789984465317879999999879987231246-666688
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE-ECCCHH----HHHHHCCCC--C-CEEECCHHHHHHHHH
Q ss_conf 20023332222222221112222----11111233432023-101012----233201345--4-213368557777554
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQ-ILGTDL----SRFAKELKS--H-LVFSHNFEQSLQLLL 185 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~-~~g~~~----~~~l~~~~~--~-~~~~~~~~~~~~~l~ 185 (274)
. ....|++....+++++++++. --+++||.+..+.. ..|+.. ++...+.+. + +.+..+.+....++.
T Consensus 157 d-l~~~P~~~~~~~vvvp~~HPLa~~~~itl~dL~~~plI~~~~g~~~R~~id~~f~~~g~~P~iv~e~~~~~~I~~~V~ 235 (324)
T PRK12681 157 D-LIMLPCYHWNRSVVVPPDHPLAKKKKLTIEELAQYPLVTYVFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVR 235 (324)
T ss_pred C-CEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf 7-468640003222457999965579999999986998596149982999999999988997607999898999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCC
Q ss_conf 432100366558999999845876673262-367768770799981899
Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~ 233 (274)
.|-.=+ +.+.... ....+.....+ ...+......+++++|+.
T Consensus 236 ~GlGV~-ilp~mA~-----~~~~d~~l~~~~~~~~f~~~~t~i~~r~g~ 278 (324)
T PRK12681 236 LGLGVG-VIASMAV-----DPVADPDLVAIDASHLFAHSTTKIGFRRGT 278 (324)
T ss_pred HCCEEE-ECHHHHC-----CCCCCCCEEEEECCCCCCCCEEEEEEECCC
T ss_conf 599139-7035551-----965578817843655677764799997997
No 57
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional
Probab=96.01 E-value=0.056 Score=31.92 Aligned_cols=157 Identities=13% Similarity=0.172 Sum_probs=91.4
Q ss_pred EEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 52167899762-99855566898898864310322110000367567542002333222222222111222--2111112
Q gi|254781112|r 70 IDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQ--DIRSFKD 146 (274)
Q Consensus 70 ~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~--~~~~~~d 146 (274)
.+++....+.. ++++++...+....++.+++|++|+..+....+.....+ ...|.+....++++.++.+ .-.+++|
T Consensus 113 p~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~D~~i~~~~~~~~~~~~-~~~~l~~~~~~lv~~~~~p~~~~~~l~~ 191 (312)
T PRK10341 113 SDMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSNEMKLQDL-HVEPLFESEFVLVASKSRTCTGTTTLES 191 (312)
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCE-EEEEEECCCEEEEECCCCCCCCCCCHHH
T ss_conf 999999999888977999989999999999669861999743687777874-9999512428999767542348979899
Q ss_pred CCCCCEEEEC-CCHH----HHHHHCCCC---CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-C
Q ss_conf 3343202310-1012----233201345---42133685577775544321003665589999998458766732623-6
Q gi|254781112|r 147 LTDKTVAQIL-GTDL----SRFAKELKS---HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA-D 217 (274)
Q Consensus 147 L~g~~V~~~~-g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 217 (274)
|.+....... ++.+ ..++++.+. .....++......++.+|..= .+.+...+..+ .......+. .
T Consensus 192 L~~~~~il~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~~i~~lv~~g~gi-~~lP~~~~~~~-----~~~~L~~lpl~ 265 (312)
T PRK10341 192 LKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFL-TVIPCDMTSPF-----GSNQFITIPIK 265 (312)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCEE-EEEHHHHHHHH-----CCCCEEEEECC
T ss_conf 8079868606998589999999997699988169989099999999979958-97269999663-----18989999899
Q ss_pred CCCCCCCEEEEEECCC
Q ss_conf 7768770799981899
Q gi|254781112|r 218 RMKDNSAVAFMMRKGN 233 (274)
Q Consensus 218 ~~~~~~~~~~~~~k~~ 233 (274)
.+.....++++.+|+.
T Consensus 266 ~~~~~~~~~lv~~k~~ 281 (312)
T PRK10341 266 ETLPVARYAAVWSKNY 281 (312)
T ss_pred CCCCEEEEEEEEECCC
T ss_conf 9885118999998939
No 58
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.039 Score=32.88 Aligned_cols=133 Identities=17% Similarity=0.140 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-------CCCEEEECC--CHH----HHHHHCCC--CCCEEECCHHHHHHHHHHHHH
Q ss_conf 222222222111222211111233-------432023101--012----23320134--542133685577775544321
Q gi|254781112|r 125 YIAHRVLLVVRSDQQDIRSFKDLT-------DKTVAQILG--TDL----SRFAKELK--SHLVFSHNFEQSLQLLLSKRT 189 (274)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~dL~-------g~~V~~~~g--~~~----~~~l~~~~--~~~~~~~~~~~~~~~l~~grv 189 (274)
....+..++++++++ +++++||. |...+.-.| +.. ..+.+..+ ...+.|+..-+++..|+.|++
T Consensus 119 v~~~p~~l~v~~~s~-~~t~~dlv~~~k~~p~~v~~~~~g~Gs~dhl~~~~~~k~~Gi~~~~Vpy~g~gea~taLlgg~v 197 (319)
T COG3181 119 LVSDPGVLVVRADSP-YKTLKDLVAYAKADPGSVIGGGSGLGSADHLAGALFAKAAGIKITYVPYKGGGEALTALLGGHV 197 (319)
T ss_pred EECCCCEEEEECCCC-CCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCE
T ss_conf 113661599817887-3669999999985998089547888958899999999973896257741686487899860866
Q ss_pred HCCCCCHHHHHHHHHHCCCCCCC-------------EE----ECCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCC
Q ss_conf 00366558999999845876673-------------26----236776877079998189-9899999999999999798
Q gi|254781112|r 190 DATMIPDIPFFNFLERRPHDGNL-------------FK----IADRMKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDG 251 (274)
Q Consensus 190 D~~~~~~~~~~~~~~~~~~~~~~-------------~~----~~~~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G 251 (274)
|+...+........+.- ..... ++ ...+.......++..+++ +.+....++++++++.+|.
T Consensus 198 ~a~~~~~se~~~~vksG-~lr~Lav~s~eRl~~~pdvPT~~E~G~~~~~~~wrgvfap~g~~~e~~~~~~~a~kk~l~s~ 276 (319)
T COG3181 198 DAGSTNLSELLSQVKSG-TLRLLAVFSEERLPGLPDVPTLKEQGYDVVMSIWRGVFAPAGTPDEIIAKLSAALKKALASP 276 (319)
T ss_pred EEEECCHHHHHHHHCCC-CEEEEEEECHHHCCCCCCCCCHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCH
T ss_conf 54436712435563057-46787753431067799999867638754664435898079999999999999999986398
Q ss_pred HHHHHHHH
Q ss_conf 59999987
Q gi|254781112|r 252 TYKKIFDR 259 (274)
Q Consensus 252 ~~~~I~~k 259 (274)
++++.+++
T Consensus 277 e~~~~~~~ 284 (319)
T COG3181 277 EWQKRLKE 284 (319)
T ss_pred HHHHHHHH
T ss_conf 89999985
No 59
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family; InterPro: IPR010067 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulphur from aliphatic sulphonates. Related proteins include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulphate ester binding protein AtsR, and the probable aromatic sulphonate binding protein AsfC. All these families make sulphur available when Cys and sulphate levels are low.; GO: 0006790 sulfur metabolic process, 0006810 transport, 0016020 membrane.
Probab=95.93 E-value=0.024 Score=34.17 Aligned_cols=134 Identities=19% Similarity=0.107 Sum_probs=80.8
Q ss_pred EHHHHHHHCCCCCCCCCCC-HHHHHHHHHCCCCCCCH-HC--CCCHHHHHH-HCCC----CCCCCCCCCCCCCCCCCCCC
Q ss_conf 1678997629985556689-88988643103221100-00--367567542-0023----33222222222111222211
Q gi|254781112|r 72 LIKEVAHRLNLKVEFFETA-VSGLITGLDTNRYDVLV-NV--AITPERQKK-YDFS----IPYIAHRVLLVVRSDQQDIR 142 (274)
Q Consensus 72 l~~~i~~~lg~~~~~~~~~-~~~~~~~l~~g~~D~~~-~~--~~t~eR~~~-~~fs----~p~~~~~~~~~~~~~~~~~~ 142 (274)
+.+.-..+-|.+++|+..+ -...++.|..|.+|+-. +. +.... ... ...- .+.......+++.++ ..++
T Consensus 22 ~~~~~~~~~g~~~~~~~f~~g~~~~~~l~~g~~d~g~~g~~p~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 99 (311)
T TIGR01728 22 LLEKEGGKEGTKVEWVEFPGGPPELEALGAGSLDFGYIGPGPALNAY-AAGNADIKAVGLSSDGPSATALVVGKG-SGIR 99 (311)
T ss_pred HHHHCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCHHEEEC-CCCCCCEEEEEEECCCCCCEEEEECCC-CCCC
T ss_conf 13440365661247886267547777520565001433673120100-036764679985257764035663366-7730
Q ss_pred CCCCCCCCCEEEECCCHHHHHH----HCCC------C----CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 1112334320231010122332----0134------5----42133685577775544321003665589999998458
Q gi|254781112|r 143 SFKDLTDKTVAQILGTDLSRFA----KELK------S----HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRP 207 (274)
Q Consensus 143 ~~~dL~g~~V~~~~g~~~~~~l----~~~~------~----~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~ 207 (274)
+++||+||+|++..|+....++ .+.+ . ..+..-++.++..++.+|.+|++............+.+
T Consensus 100 ~~~dlkGk~~a~~~g~~~~~~~~~~l~~~ggl~~~~~~~~d~~~~~~~~~~~~~a~~~g~~da~~~~~P~~~~~~~~~~ 178 (311)
T TIGR01728 100 SVKDLKGKRIAVPKGGSGHDLLLRALLKAGGLEDNLLSGDDVDILELGPSDARAALAAGQVDAWGIWEPWLSALVEEGG 178 (311)
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCEEECCCCCHHHHHHHCC
T ss_conf 1433477456630666157899999997347200036876315540260456776540462212116871445432226
No 60
>PRK12680 transcriptional regulator CysB-like protein; Reviewed
Probab=95.81 E-value=0.15 Score=29.26 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=120.3
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHH
Q ss_conf 589589996289987248704699848898852167899762-998555668988988643103221100-003675675
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQ 116 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~ 116 (274)
..|.|+||+..+-..| +.+.++...-++- ++++++...+..++.+.+.+|++|+.. .......
T Consensus 91 ~~G~L~Ig~~~t~a~~-------------~LP~vi~~f~~~yP~V~l~l~~~~~~~l~e~l~~g~~Diai~~~~~~~~-- 155 (327)
T PRK12680 91 SQGQLTLTTTHTQARF-------------VLPPAVAQIKQAYPQVSVHLQQAAESAALDLLGQGDADIAVVSTAGGEP-- 155 (327)
T ss_pred CCEEEEEEEECHHHHH-------------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEECCCCCCC--
T ss_conf 7337999984227777-------------5689999999868996799998982889999978994099944777799--
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCEEE-ECCCHH----HHHHHCCCC--CC-EEECCHHHHHHH
Q ss_conf 420023332222222221112222-----11111233432023-101012----233201345--42-133685577775
Q gi|254781112|r 117 KKYDFSIPYIAHRVLLVVRSDQQD-----IRSFKDLTDKTVAQ-ILGTDL----SRFAKELKS--HL-VFSHNFEQSLQL 183 (274)
Q Consensus 117 ~~~~fs~p~~~~~~~~~~~~~~~~-----~~~~~dL~g~~V~~-~~g~~~----~~~l~~~~~--~~-~~~~~~~~~~~~ 183 (274)
.-..+.|.+....+++++++.+. .-+++||.+..+.. ..|+.. ++..++.+. ++ .+..+.+....+
T Consensus 156 -~~~~~~pl~~~~~~vvvP~~HpL~~~~~~i~L~~La~~plI~~~~g~~~r~~id~af~~~Gl~P~iv~ea~~~d~Ik~~ 234 (327)
T PRK12680 156 -SAGIAVPLYRWRRLVVVPRGHALDTPRTAPDMAALAEHPLISYDSSTRPGSSLQRAFAQVGLEPSIALTALDADLIKTY 234 (327)
T ss_pred -CCCEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf -7654767522357999978981005899999999808988963899867999999999779976479999959999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 54432100366558999999845876673262-36776877079998189989999999999999979859999987678
Q gi|254781112|r 184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFD 262 (274)
Q Consensus 184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g 262 (274)
+..|-.= .+++..-. . ..+.....+ ...+....-..++++++.- |+...-+.|..+-.. ==.+..++.+.
T Consensus 235 V~~GlGV-~Ivp~mA~-----~-~~d~~l~~~~~~~l~~~~~~~~~~~~~~~-lr~~~~~fi~~~~p~-l~~~~~~~~~~ 305 (327)
T PRK12680 235 VRAGLGV-GLVAEMAV-----N-AFDEDLRAWPAPAPIAECIAWAVLPRDRV-LRDYALDLVHVLAPQ-IDKRDLRRVLD 305 (327)
T ss_pred HHHCCEE-EECHHHHH-----C-CCCCCEEEEECCCCCCCCEEEEEEECCCH-HHHHHHHHHHHHCCC-CCHHHHHHHHC
T ss_conf 9949861-88164762-----8-76898389406457775605999978846-899999999986688-89999999826
Q ss_pred CC
Q ss_conf 88
Q gi|254781112|r 263 KN 264 (274)
Q Consensus 263 ~d 264 (274)
-|
T Consensus 306 ~~ 307 (327)
T PRK12680 306 GN 307 (327)
T ss_pred CC
T ss_conf 88
No 61
>TIGR03414 ABC_choline_bnd choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling (PMID:16930487) vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins.
Probab=95.72 E-value=0.036 Score=33.08 Aligned_cols=213 Identities=16% Similarity=0.108 Sum_probs=103.1
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHC-CCCHH
Q ss_conf 78858958999628998724870469984889885216789976299855566898898864310322110000-36756
Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNV-AITPE 114 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~-~~t~e 114 (274)
+..+.++|+||.. +|+- + -+...+++.|.+++|++|+++..+-.-++.++.+|++|+.... ..+.+
T Consensus 3 ~~a~~~~V~i~~~-~W~s---------~---~~~t~v~~~iLE~~GY~Ve~~~~~~~~~~~~la~GdiDv~~e~W~p~~~ 69 (290)
T TIGR03414 3 EPASCKTVRFADV-GWTD---------I---TATTALASVLLEGLGYQPKVTLLSVPVTYAGLKDGDLDVFLGNWMPAME 69 (290)
T ss_pred CHHCCCCEEEEEC-CCCH---------H---HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 7100996699606-8648---------9---9999999999997499648996774999999976997078711147857
Q ss_pred --HHH-----HHC-CCCCCCCCCCCCCCCCCC--CCCCCCCCCC-------CCCEEEECCCHHHHH----HH--CCCC-C
Q ss_conf --754-----200-233322222222211122--2211111233-------432023101012233----20--1345-4
Q gi|254781112|r 115 --RQK-----KYD-FSIPYIAHRVLLVVRSDQ--QDIRSFKDLT-------DKTVAQILGTDLSRF----AK--ELKS-H 170 (274)
Q Consensus 115 --R~~-----~~~-fs~p~~~~~~~~~~~~~~--~~~~~~~dL~-------g~~V~~~~g~~~~~~----l~--~~~~-~ 170 (274)
..+ .+. ....+-.....+++++-- ..+++++||+ |+-+|...|+..... ++ .++. .
T Consensus 70 ~~~~~~~~~g~v~~lg~~~~~a~~g~~VP~Yv~d~~l~si~DL~~~~~~f~g~i~gi~~G~~~~~~~~~~i~~~~ygL~~ 149 (290)
T TIGR03414 70 PDIKPYLESGSVEVLGPNLEGAKYTLAVPTYVADAGLKSFADIAKFKDKLDGKIYGIEPGNDGNRLIQKMIDKNAFGLGG 149 (290)
T ss_pred HHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHCCCCCHHHHHHCHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 78998863696898356667863789854147765999999998586752997613679984778999998764079887
Q ss_pred CEEEC-CHHHHH----HHHHHHHHHCCCC--CHHHHHHH-HHHCCCCCCCEEECCCCCCCCCEEEEEECC----CHHHH-
Q ss_conf 21336-855777----7554432100366--55899999-984587667326236776877079998189----98999-
Q gi|254781112|r 171 LVFSH-NFEQSL----QLLLSKRTDATMI--PDIPFFNF-LERRPHDGNLFKIADRMKDNSAVAFMMRKG----NNKLT- 237 (274)
Q Consensus 171 ~~~~~-~~~~~~----~~l~~grvD~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~----~~~L~- 237 (274)
..... +....+ .+..+|+-=++.. +......| ++..... -....+......++..++++ +|+..
T Consensus 150 ~~l~~~S~aam~a~l~~A~~~~epiv~~~W~Phw~~~~~dl~~L~~~---~~~~g~~~~~~~v~~~~~~~f~~~~P~~~~ 226 (290)
T TIGR03414 150 FKLVESSEAGMLAQVARAVKRKEWVVFLGWEPHPMNTNFKMTYLTGG---DDYFGPNYGGATVYTNTRKGYAAECPNVGK 226 (290)
T ss_pred CEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEECCC---CCCCCCCCCHHHEEECCCHHHHHHCHHHHH
T ss_conf 02136888999999999998699989982377545551770670587---445789986220664147058787938999
Q ss_pred ---------HHHHHHHHHHHHCC-HHHHHHHHHCCCC
Q ss_conf ---------99999999999798-5999998767888
Q gi|254781112|r 238 ---------RSINEILCAIHLDG-TYKKIFDRYFDKN 264 (274)
Q Consensus 238 ---------~~in~~l~~l~~~G-~~~~I~~kw~g~d 264 (274)
+.+|..+..+.++| ..++..++|+..+
T Consensus 227 ~l~~~~~~~~~~~~~~~~i~~~g~~~~~aA~~Wi~~n 263 (290)
T TIGR03414 227 LLTNLTFTLDMENQIMGAILNDGKDPEAAARQWLKAN 263 (290)
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 9961589989999999999975999999999999979
No 62
>PRK11074 putative DNA-binding transcriptional regulator; Provisional
Probab=95.65 E-value=0.1 Score=30.31 Aligned_cols=199 Identities=14% Similarity=0.129 Sum_probs=103.6
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 58958999628998724870469984889885216789976-29985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
.+|+|+|++.....++ + ...++....++ =++++++.....++..+.+.+|++|+..+.........
T Consensus 90 ~~G~lri~~~~~~~~~-~------------l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dlai~~~~~~p~~~ 156 (300)
T PRK11074 90 WRGQLSIALDNIVRPD-R------------TRQLIADFYRHFDDVELIIRQEVFNGVWDALADGRADIAIGATRAIPVGG 156 (300)
T ss_pred CCCEEEEEECCHHHHH-H------------HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 8425999865335789-9------------99999999998869579999766367999997699778994376778888
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCEEEECCCHHH--H-HHHCC-CCCCEEECCHHHHHHHHHHHH
Q ss_conf 20023332222222221112222-----111112334320231010122--3-32013-454213368557777554432
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD-----IRSFKDLTDKTVAQILGTDLS--R-FAKEL-KSHLVFSHNFEQSLQLLLSKR 188 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~-----~~~~~dL~g~~V~~~~g~~~~--~-~l~~~-~~~~~~~~~~~~~~~~l~~gr 188 (274)
.+. ..++......+++..+.+. ..+.++|......+..++... . ..... ......+++....++++.+|-
T Consensus 157 ~~~-~~~l~~~~~~~v~~~~hpLa~~~~~l~~~~l~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Gl 235 (300)
T PRK11074 157 RFA-FRDMGMLSWAFVVSSDHPLALMDGPLSDDELRPYPSICLEDTSRTLPKRITWLLDNQRRLVVPDWESAINCLSAGL 235 (300)
T ss_pred CEE-EEECCCCEEEEEECCCCHHHCCCCCCCHHHHHHCCEEEECCCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHCC
T ss_conf 657-8881442056674589755408998999999619778862662223210003545764799898999999999699
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHC
Q ss_conf 100366558999999845876673262-3677687707999818998999999999999997985999998767
Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYF 261 (274)
Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~ 261 (274)
.= .+.+...+..++..- ..+.+ ...+....+++++.++++. -..+-..++-+.++ .++.++|+
T Consensus 236 Gi-a~lP~~~~~~~l~~G----~Lv~l~~~~~~~~~~~~lv~~~~~~--sPa~r~fld~L~d~---~~~~~~~~ 299 (300)
T PRK11074 236 GV-GMVPTHFAKPLIESG----KLVEKTLENPKPDSPCCLTWNQNDM--SPALAWLLDYLGDS---ETLNKEWL 299 (300)
T ss_pred EE-EHHHHHHHHHHHHCC----CEEEECCCCCCCCEEEEEEECCCCC--CHHHHHHHHHHHCC---HHHHHHHH
T ss_conf 68-940699999996089----9999827888885389999889999--98999999998371---00224752
No 63
>PRK04168 hypothetical protein; Provisional
Probab=95.63 E-value=0.043 Score=32.59 Aligned_cols=211 Identities=15% Similarity=0.153 Sum_probs=100.1
Q ss_pred HHHHCCCEEEEECCCC-CCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCCHHHHHHHHH--CCCCCCCHHCCC
Q ss_conf 7885895899962899-8724870469984889885216789976-29985556689889886431--032211000036
Q gi|254781112|r 36 RTEDQSALRVGTDGIY-PPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETAVSGLITGLD--TNRYDVLVNVAI 111 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~-pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~~~~~~~~l~--~g~~D~~~~~~~ 111 (274)
.++++++|+|-..+.. .||. ++.++..++ -|++++...--...+...+. ...+|++.++.+
T Consensus 28 ~~~~~~~l~Vf~AGSL~~pf~---------------ei~~~Fe~~~p~v~v~~e~~GS~~~ar~Ite~g~~aDVfaSAD~ 92 (336)
T PRK04168 28 EAEPPGKLKIFHAGSLSVPFE---------------EYEKEFEAYYPNVDVQREAGGSVACVRKITELGKPADILASADY 92 (336)
T ss_pred CCCCCEEEEEEECCCCHHHHH---------------HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEECCH
T ss_conf 778861599997552589999---------------99999998789965999847389999999957999888998985
Q ss_pred CHHHHH----HHCCCCCCCCCCCCCCCCCCCC---CC--CCCCC-C--CCCCEEE------ECCCH--------------
Q ss_conf 756754----2002333222222222111222---21--11112-3--3432023------10101--------------
Q gi|254781112|r 112 TPERQK----KYDFSIPYIAHRVLLVVRSDQQ---DI--RSFKD-L--TDKTVAQ------ILGTD-------------- 159 (274)
Q Consensus 112 t~eR~~----~~~fs~p~~~~~~~~~~~~~~~---~~--~~~~d-L--~g~~V~~------~~g~~-------------- 159 (274)
+.=+.. ..+|..++-....++....++. .+ .+|-+ | .|.++|. ..|+.
T Consensus 93 ~~i~~ll~p~~adw~v~FA~N~lViayt~~Sk~a~ei~~~nWyeiL~~~~Vk~g~sdP~~DP~Gyrt~~~~~LAe~~Y~~ 172 (336)
T PRK04168 93 TLIPKMMIPEYADWYVMFATNEIVLAYTDKSKYADEINSDNWYEILQRPGVKWGFSDPNDDPCGYRSLMVLQLAELYYND 172 (336)
T ss_pred HHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 78788746443341012115538999768882110057331889857798579837998898608999999999986068
Q ss_pred ---HHHHHHCC-------------------CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH---CCCCCC---
Q ss_conf ---22332013-------------------45421336855777755443210036655899999984---587667---
Q gi|254781112|r 160 ---LSRFAKEL-------------------KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLER---RPHDGN--- 211 (274)
Q Consensus 160 ---~~~~l~~~-------------------~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~---~~~~~~--- 211 (274)
+++.+.+. ..++...+...+.+..|.+|++|+.+.-...+...-.. .|..-+
T Consensus 173 pgl~~~l~~~~~n~~~~~~~i~~p~~~~~n~~k~~~rp~e~~Ll~~lesG~~Dy~f~Y~S~A~q~~L~yv~LP~eINL~~ 252 (336)
T PRK04168 173 PTIYDKLVLKNTNFYVNGTYIRSPKEILVNRPKIFVRPKEVELLGLLETGAMDYLFIYKSVAVQHNLKYIELPDEINLGD 252 (336)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCEECCCHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCCHHHCCCC
T ss_conf 41788886403553345422356043114554311055267777787558864698762448676997003833314678
Q ss_pred ----------CEEECCC----CCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf ----------3262367----76877079998189--9899999999999999798599999876788877
Q gi|254781112|r 212 ----------LFKIADR----MKDNSAVAFMMRKG--NNKLTRSINEILCAIHLDGTYKKIFDRYFDKNII 266 (274)
Q Consensus 212 ----------~~~~~~~----~~~~~~~~~~~~k~--~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274)
.+.+... .-.+.-|++++.++ |+++...|=+.|. +.+-++|+++ .|++.+
T Consensus 253 ~~~ad~Y~~vsv~v~~~~~t~~g~PIvY~iTV~~~A~n~e~A~~FV~fll----s~~Gq~il~~-~G~~p~ 318 (336)
T PRK04168 253 YSYADFYKKVSVTLTGKKPTITAKPIVYGITVPKNAPNREAAIEFLKYLL----DEGGPKIFEN-NGQPPI 318 (336)
T ss_pred CCCCCCCCEEEEEECCCCCCEECCCEEEEEECCCCCCCHHHHHHHHHHHH----CCHHHHHHHH-CCCCCC
T ss_conf 11002010589997178751214766898764689999899999999984----8025899997-599987
No 64
>PRK11062 nhaR transcriptional activator NhaR; Provisional
Probab=95.61 E-value=0.13 Score=29.63 Aligned_cols=188 Identities=11% Similarity=0.065 Sum_probs=101.6
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCCHHHHHHHHHCCCCCCCHH-CCCCHHHHH
Q ss_conf 8958999628998724870469984889885216789976-29985556689889886431032211000-036756754
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETAVSGLITGLDTNRYDVLVN-VAITPERQK 117 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~~~~~~~~l~~g~~D~~~~-~~~t~eR~~ 117 (274)
...++||+.+..+++ + ...++..+.+. -++++....-+.+.++..|..++.|++.. ...... ..
T Consensus 92 ~~~lrvGi~~tl~k~-~------------~~~lL~~~~~~~~~v~l~~~eg~~~~LL~~L~~~~LDlvLsd~p~~~~-~~ 157 (296)
T PRK11062 92 NLLFDVGVADALSKR-L------------VSRVLLAAVPEDESIHLRCFESTHEMLLEQLSQHKLDMILSDCPVDST-QQ 157 (296)
T ss_pred CCEEEEEEHHHHHHH-H------------HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCC-CC
T ss_conf 705999852464698-9------------999999997228977999934987999999983898757606888755-68
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC-CCH----HHHHHHCCCCC--C-EEECCHHHHHHHHHHHHH
Q ss_conf 200233322222222211122221111123343202310-101----22332013454--2-133685577775544321
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQIL-GTD----LSRFAKELKSH--L-VFSHNFEQSLQLLLSKRT 189 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~-g~~----~~~~l~~~~~~--~-~~~~~~~~~~~~l~~grv 189 (274)
.-.|+.+....+..++..++......+++|.+..+-... ++. .+.+..+.+.+ + .+++ ...+++.+...-.
T Consensus 158 ~~~~s~~L~~~~v~~~~~~~l~~~~fP~~L~~~plllp~~~S~lR~~ld~wf~~~gI~P~Iv~E~d-D~allk~~a~~G~ 236 (296)
T PRK11062 158 EGLFSKKLGECGVSFFCTNPLPEKPFPACLEERRLLIPGRRTMLGRKLLNWFNSQGLNVEILGEFD-DAALMKAFGAYHD 236 (296)
T ss_pred CCEEEEECCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHHCC
T ss_conf 863898746684689845744458795775579840279987589999999996899844999859-8999999998199
Q ss_pred HCCCCCHHHHHHHHHHCCCCCCCEEECCCC-CCCCCEEEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 003665589999998458766732623677-687707999818--998999999999999
Q gi|254781112|r 190 DATMIPDIPFFNFLERRPHDGNLFKIADRM-KDNSAVAFMMRK--GNNKLTRSINEILCA 246 (274)
Q Consensus 190 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k--~~~~L~~~in~~l~~ 246 (274)
-.++.+..+......+... ..+...+ .....|++...+ .+|.+....+.+-..
T Consensus 237 Gva~~P~~v~~d~~~~~~l----~~~g~~~~v~e~fyAIt~~R~~~hP~v~~i~~~~~~~ 292 (296)
T PRK11062 237 AIFVAPSIYAQDIYADHSV----VEIGRVENVKEEYHVIFAERMIQHPAVQRICNTDFSA 292 (296)
T ss_pred CEEECCHHHHHHHHHCCCC----EEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 8898789999999857991----8944578842679998504468986999999999987
No 65
>PRK09755 putative binding protein; Provisional
Probab=95.55 E-value=0.19 Score=28.62 Aligned_cols=82 Identities=10% Similarity=0.092 Sum_probs=45.9
Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEC-----CCHHHHHHHHHHHH
Q ss_conf 2133685577775544321003665589999998458766732623677687707999818-----99899999999999
Q gi|254781112|r 171 LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRK-----GNNKLTRSINEILC 245 (274)
Q Consensus 171 ~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-----~~~~L~~~in~~l~ 245 (274)
....++....+.+|.+|++|............ .+.... .+...+ ..... ++.++- +|+.++.+|+.+|.
T Consensus 244 ~~~i~d~~t~~~~l~sGevD~~~~~~~~~~~~-~~~~~~--~~~~~p-~~~~~--y~~~N~~~~p~~D~~VRqAi~~AiD 317 (535)
T PRK09755 244 YLALDNSVTGYNRYRAGEVDLTWVPAQQIPAI-EKSLPG--ELRIIP-RLNSE--YYNFNLEKPPFNDVRVRRALYLTVD 317 (535)
T ss_pred EEECCCHHHHHHHHHCCCCEEECCCHHHHHHH-HHCCCC--CEEEEE-CCCEE--EEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 99779689999998779823851898999999-745688--589983-25338--9976046576679999999997537
Q ss_pred HHHHCCHHHHHHHHHCCCCC
Q ss_conf 99979859999987678887
Q gi|254781112|r 246 AIHLDGTYKKIFDRYFDKNI 265 (274)
Q Consensus 246 ~l~~~G~~~~I~~kw~g~d~ 265 (274)
+ +.|.++-||...
T Consensus 318 r-------~~i~~~v~G~~~ 330 (535)
T PRK09755 318 R-------QLIAQKVLGLRT 330 (535)
T ss_pred H-------HHHHHHHCCCCC
T ss_conf 9-------999998537872
No 66
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=95.38 E-value=0.22 Score=28.24 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=101.7
Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCC--CCCCHHCC
Q ss_conf 88788589589996289987248704699848898852167899762998555668-9889886431032--21100003
Q gi|254781112|r 34 PFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNR--YDVLVNVA 110 (274)
Q Consensus 34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~--~D~~~~~~ 110 (274)
...+++.++|+|-. |.= |. +.|+++..-++.|++|++... +-++++..|+.|. +|++..-.
T Consensus 23 ~~~aa~~~~Lnv~n---W~~--Yi-----------~p~~i~~FeketGikV~~~~~~snee~~akl~ag~~gyDvv~ps~ 86 (370)
T PRK10682 23 GTLAAEQKTLHIYN---WSD--YI-----------APDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSA 86 (370)
T ss_pred CHHHHCCCEEEEEC---CCC--CC-----------CHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECH
T ss_conf 05664279799981---676--57-----------977999999997988999954998999999966999998899777
Q ss_pred CCHHH-------------------------HH---H----HCCCCCCCCCCCCCCCCCCCC--------CCCCCCCC---
Q ss_conf 67567-------------------------54---2----002333222222222111222--------21111123---
Q gi|254781112|r 111 ITPER-------------------------QK---K----YDFSIPYIAHRVLLVVRSDQQ--------DIRSFKDL--- 147 (274)
Q Consensus 111 ~t~eR-------------------------~~---~----~~fs~p~~~~~~~~~~~~~~~--------~~~~~~dL--- 147 (274)
+.-+| .+ . -.|+-||......+..+++.- ...++++|
T Consensus 87 ~~v~~~~~~gll~pLD~sklpN~~ni~p~~~~~~~~~dpg~~YsVPy~wGt~GI~Yn~d~v~~~~g~~~p~~sW~~l~~P 166 (370)
T PRK10682 87 SFLERQLTAGVFQPLDKSKLPNWKNLDPELLKLVAKHDPDNKYAMPYMWATTGIGYNVDKVKAVLGEDAPVDSWDLVLKP 166 (370)
T ss_pred HHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHHHHHCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHCH
T ss_conf 99999997698464770008674442999884100369997599888842259999765442234678884629986492
Q ss_pred ------CCCCEEEEC-------------CCH-----HHH-------HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH
Q ss_conf ------343202310-------------101-----223-------3201345421336855777755443210036655
Q gi|254781112|r 148 ------TDKTVAQIL-------------GTD-----LSR-------FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274)
Q Consensus 148 ------~g~~V~~~~-------------g~~-----~~~-------~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274)
++.+|++.. |.. .++ .+.+.+.++..+.+ .+....|.+|++.+.++-.
T Consensus 167 ~~~~k~k~~~v~~ld~~~~~~~~aL~~lG~~~n~~~~~d~~~aa~~~L~~~kp~v~~~~s-~~~~~~l~~Gei~~a~~ws 245 (370)
T PRK10682 167 ENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHS-SQYINDLANGDICVAIGWA 245 (370)
T ss_pred HHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHCCEECC-CHHHHHHHCCCEEEEEEEC
T ss_conf 756530358558976888999999997699989999999999999999971222441037-2889998548679999740
Q ss_pred HHHHHHH---HHCCCCCCCEEE-CCCCCCCCCEEEEEECC--CHHHHHH-HHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 8999999---845876673262-36776877079998189--9899999-999999999798599999876788
Q gi|254781112|r 197 IPFFNFL---ERRPHDGNLFKI-ADRMKDNSAVAFMMRKG--NNKLTRS-INEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 197 ~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~--~~~L~~~-in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
-.+.... .......+...+ +.+-..---=+++++++ |+++... ||-.+ +.+..+....|.|.
T Consensus 246 Gd~~~~~~~~~~~~~~~~i~yv~PkEG~~~w~D~~~Ipk~A~n~~~A~~FInf~l-----~Pe~aa~~~~~~~y 314 (370)
T PRK10682 246 GDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLL-----RPDVIAHISDHVFY 314 (370)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHC-----CHHHHHHHHHHHCC
T ss_conf 8999999999863578706998158874588878888689999699999999850-----97999999986478
No 67
>TIGR01256 modA molybdate ABC transporter, periplasmic molybdate-binding protein; InterPro: IPR005950 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represents a hydrophylioc periplasmic-binding protein in Gram-negative organisms and its counterpart in Gram-positive organisms is a lipoprotein. The other components of the system include ModB, an integral membrane protein and ModC, the ATP-binding subunit. Almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.; GO: 0015412 molybdate transmembrane-transporting ATPase activity, 0015689 molybdate ion transport, 0030288 outer membrane-bounded periplasmic space.
Probab=95.31 E-value=0.045 Score=32.48 Aligned_cols=183 Identities=20% Similarity=0.279 Sum_probs=114.9
Q ss_pred EEHHHHHHHCC-CCCCCCCCCHHHHHHHHHCCC-CCCCHHCCC-CH----HHHHHHCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 21678997629-985556689889886431032-211000036-75----6754200233-3222222222111222211
Q gi|254781112|r 71 DLIKEVAHRLN-LKVEFFETAVSGLITGLDTNR-YDVLVNVAI-TP----ERQKKYDFSI-PYIAHRVLLVVRSDQQDIR 142 (274)
Q Consensus 71 dl~~~i~~~lg-~~~~~~~~~~~~~~~~l~~g~-~D~~~~~~~-t~----eR~~~~~fs~-p~~~~~~~~~~~~~~~~~~ 142 (274)
||.+...++.| .+|.+..-+...+...+++|= +|+..++.- .+ |+...+.++. -|.....++++.+.+...+
T Consensus 10 ~i~~~F~k~~g~~~Vv~sFgsSg~L~~QI~~GAP~D~F~SA~~~~~~~L~~~g~~v~~~~~~~~~n~LVL~~~~~~~~~~ 89 (225)
T TIGR01256 10 EIAKQFEKRTGKNKVVFSFGSSGTLYTQIENGAPADVFISADEKRPKKLVDKGLVVKGSEFVYAGNKLVLISPKNSRVVD 89 (225)
T ss_pred HHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCEECCCCEEEEEEEEEEEECCCCCCCC
T ss_conf 99988620089956999876817899999717978876614634540466378730254458986218998535542013
Q ss_pred CCCCC---------CCCCEEE------ECCCHHHHHHHCCC------CCCEEEC-CHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 11123---------3432023------10101223320134------5421336-8557777554432100366558999
Q gi|254781112|r 143 SFKDL---------TDKTVAQ------ILGTDLSRFAKELK------SHLVFSH-NFEQSLQLLLSKRTDATMIPDIPFF 200 (274)
Q Consensus 143 ~~~dL---------~g~~V~~------~~g~~~~~~l~~~~------~~~~~~~-~~~~~~~~l~~grvD~~~~~~~~~~ 200 (274)
+.+.| +.++|++ +.|-...+.+++.+ .+++.-. |..++++.+..|+.|+.+.-...+.
T Consensus 90 ~~~~l~~p~~~~~l~~~~vaigdP~~~P~G~~A~E~L~~lgl~~~l~~kLV~g~P~vrQA~~~V~~~nA~~GiVa~Sdv~ 169 (225)
T TIGR01256 90 SLDILKKPGWVIVLKDKTVAIGDPKHAPYGAAAKEVLQKLGLWEKLKKKLVYGEPDVRQALQFVETGNAPIGIVALSDVI 169 (225)
T ss_pred CHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCEEECCCCHHHHHHHHHHCCCCEEEEEHHEEE
T ss_conf 02211389748998637023468244435799999997079762564486524888999988877258866687311022
Q ss_pred HHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99984587667326236776877079998189--9899999999999999798599999876
Q gi|254781112|r 201 NFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274)
...+ .......++...+.+-.+-+++-++ |.+....+=+.| ++.+=.+|++||
T Consensus 170 ~~~K---~~~~v~~~p~~ly~Pi~yp~~i~~~g~n~~~a~~f~dyL----~sp~A~~il~~Y 224 (225)
T TIGR01256 170 PSGK---KVGSVAVIPEDLYKPIKYPAVIVKGGKNNAAAKAFIDYL----KSPEAKEILRKY 224 (225)
T ss_pred ECCC---CCCEEEEECHHHCCCEEEEEEEEECCCCHHHHHHHHHHH----CCHHHHHHHHCC
T ss_conf 0003---662799963312796021178871687608999999870----796476786305
No 68
>COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]
Probab=95.02 E-value=0.051 Score=32.15 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=85.3
Q ss_pred HHCCCCCCCCCC-CHHHHHHHHHCCCCCCCH-HC------CCCHHHHHHHCCCC----CCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 762998555668-988988643103221100-00------36756754200233----3222222222111222-21111
Q gi|254781112|r 78 HRLNLKVEFFET-AVSGLITGLDTNRYDVLV-NV------AITPERQKKYDFSI----PYIAHRVLLVVRSDQQ-DIRSF 144 (274)
Q Consensus 78 ~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~-~~------~~t~eR~~~~~fs~----p~~~~~~~~~~~~~~~-~~~~~ 144 (274)
+..+...+.+.+ +|.. +..++.|++|+.. -+ .|+..--+.+.-.. --+.-.+.++++++.+ .++++
T Consensus 14 ~~~~~~~~~~~vGS~gG-~~~i~~G~adiag~hlld~~~g~ynip~v~~~~~~~~~LI~g~~Re~Gl~v~~gnpk~i~~~ 92 (223)
T COG1910 14 KEAGETAKTVYVGSMGG-LLAIKRGEADIAGIHLLDNESGTYNIPYVKKYLPGEAVLIRGYLREQGLMVQKGNPKNISSL 92 (223)
T ss_pred HHCCCCCCEEEECCCCC-HHHHHHCCCCEEEEEECCCCCCCEEHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCCCCCCH
T ss_conf 41523450688604455-47666254514442132577874423004230788469985366510368864897766249
Q ss_pred CCCCCCCEEE---ECCC----HHHHHHHCCCC---CCE----EECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
Q ss_conf 1233432023---1010----12233201345---421----33685577775544321003665589999998458766
Q gi|254781112|r 145 KDLTDKTVAQ---ILGT----DLSRFAKELKS---HLV----FSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDG 210 (274)
Q Consensus 145 ~dL~g~~V~~---~~g~----~~~~~l~~~~~---~~~----~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~ 210 (274)
+||.++.+.. .+|+ ..++.+...+. .+. +..+......++.+|++|+-+.-.. +..++..+
T Consensus 93 edl~~~d~~fVNR~rGSGTR~LlD~~L~~~~~~~~~I~GY~~e~~th~avA~aVa~G~AD~GvGlr~----~A~~~gL~- 167 (223)
T COG1910 93 EDLLRKDLRFVNRNRGSGTRILLDELLGELNILPDSIKGYSDEATTHDAVASAVASGRADAGVGLRH----AAEKYGLD- 167 (223)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHH----HHHHCCCC-
T ss_conf 9885267578715899658999999998737670105784323212089999997589872501799----99984985-
Q ss_pred CCEEECCCCCCCCCEEEEEECCCH--HHHHHHHHHHH
Q ss_conf 732623677687707999818998--99999999999
Q gi|254781112|r 211 NLFKIADRMKDNSAVAFMMRKGNN--KLTRSINEILC 245 (274)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~k~~~--~L~~~in~~l~ 245 (274)
..|...+.|-|+++|++- .....|-++|+
T Consensus 168 ------Fipl~~E~YD~virke~~~~~~vr~fi~~L~ 198 (223)
T COG1910 168 ------FIPLGDEEYDFVIRKERLDKPVVRAFIKALK 198 (223)
T ss_pred ------EEECCCCEEEEEEEHHHCCCHHHHHHHHHHC
T ss_conf ------1774562578998456705888999999861
No 69
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=94.93 E-value=0.064 Score=31.58 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=93.5
Q ss_pred CCCCCCHHHHHHHHHCCCCCC-CHHCCCCHHHHHHHC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHH
Q ss_conf 556689889886431032211-000036756754200--23332222222221112222111112334320231010122
Q gi|254781112|r 85 EFFETAVSGLITGLDTNRYDV-LVNVAITPERQKKYD--FSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLS 161 (274)
Q Consensus 85 ~~~~~~~~~~~~~l~~g~~D~-~~~~~~t~eR~~~~~--fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~ 161 (274)
++.......+-..+..|.+|+ +.|.-+-.|....+. ....|.....++.++++. .+++++||.|+||+.-.-....
T Consensus 47 ~~~~~R~~DIp~yV~~G~~DlGI~G~D~l~E~~~~v~~~~~LgfG~crlvvAvP~~~-~~~~~~dl~~~rIATkyp~it~ 125 (287)
T PRK00489 47 EVLFLRPDDIPGYVADGVVDLGITGEDLLEESDADVEELLDLGFGKCRLVLAVPEDS-DYTGPEDLAGKRIATSYPNLTR 125 (287)
T ss_pred EEEEECHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCEEEECCCCCCEEEEEEECCCC-CCCCHHHHCCCEEEECHHHHHH
T ss_conf 999988798999997699777551331212068981699706887489999951778-8899578278589730066999
Q ss_pred HHHHCCCCC--CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHH
Q ss_conf 332013454--21336855777755443210036655899999984587667326236776877079998189--98999
Q gi|254781112|r 162 RFAKELKSH--LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLT 237 (274)
Q Consensus 162 ~~l~~~~~~--~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~ 237 (274)
+|+.+.+.+ ++......+. +-.-|-.|+ ++|-...-..++.+.. .+.......+. .+..++. +++-.
T Consensus 126 ~yf~~~Gi~~~iv~l~GavE~--aP~lGlAD~-IvDivsTG~TL~~NgL-----k~ie~Il~S~A-~LI~n~~~~~~~k~ 196 (287)
T PRK00489 126 RYLAEKGINARVVELSGAVEV--APRLGLADA-IVDLVSTGATLRANGL-----KEVEVILRSEA-VLIANKAWWDPEKR 196 (287)
T ss_pred HHHHHCCCCEEEEECCCCEEC--CCCCCCCCE-EEEEECCCHHHHHCCC-----EEEEEEEECEE-EEEEECCCCCHHHH
T ss_conf 999986993799977672304--666681008-9997167487998799-----88357750235-99980776986799
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf 99999999999798599999876788877
Q gi|254781112|r 238 RSINEILCAIHLDGTYKKIFDRYFDKNII 266 (274)
Q Consensus 238 ~~in~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274)
+.++.-+..++. .+.+=-.+|+-.|++
T Consensus 197 ~~i~~l~~ri~g--vl~A~~~~~i~~Nvp 223 (287)
T PRK00489 197 EKIDKLLTRIQG--VLRARESKYLMMNAP 223 (287)
T ss_pred HHHHHHHHHHHH--HHHHHCEEEEEEECC
T ss_conf 999999999999--997731899999787
No 70
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=94.50 E-value=0.096 Score=30.48 Aligned_cols=116 Identities=13% Similarity=0.081 Sum_probs=65.5
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCC-CCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH
Q ss_conf 8958999628998724870469984889885216789976299855-566898898864310322110000367567542
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVE-FFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~-~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274)
-++++++.. +|.= + -+...+++.+.+++|++|+ ....+..-++.+|.+|++|+..+. +.|.....
T Consensus 29 g~tV~~a~~-~W~~---------~---~a~t~v~~~~Le~lGY~Ve~~~~~~~~~~~~ala~GdiD~~~~~-WlP~~~~~ 94 (332)
T PRK11119 29 GITVQPAQS-TIAE---------E---TFQTLLVSRALEKLGYDVNKPKEVDYNVFYTSIASGDATFTAVN-WFPLHDDQ 94 (332)
T ss_pred CCEEEEEEC-CCHH---------H---HHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCCCEEEECC-CCCCCHHH
T ss_conf 977876016-8408---------9---99999999999986998542014446889999855884486556-17651799
Q ss_pred H---------CCCCCCCCC-CCCCCCCC---CCCCCCCCCCCCC-------------C--CEEEECCCHHH----HHHHC
Q ss_conf 0---------023332222-22222111---2222111112334-------------3--20231010122----33201
Q gi|254781112|r 119 Y---------DFSIPYIAH-RVLLVVRS---DQQDIRSFKDLTD-------------K--TVAQILGTDLS----RFAKE 166 (274)
Q Consensus 119 ~---------~fs~p~~~~-~~~~~~~~---~~~~~~~~~dL~g-------------~--~V~~~~g~~~~----~~l~~ 166 (274)
+ .-..++... ...+++.+ +...+++++||+. | -+|...|+... ..++.
T Consensus 95 ~~~~~~~~~~~~~g~~~~ga~~G~~V~~~~~d~~~I~si~dLkdp~~a~~Fd~~~~GKg~i~g~~pGwg~~~~~~~~i~~ 174 (332)
T PRK11119 95 YEAAGGDKKFYREGVIVGGAAQGYLIDKKTADKYNITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEAVINHQLKA 174 (332)
T ss_pred HHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHCHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99732776476424335665136895023321148578998628678986076778850288148872066899999986
Q ss_pred CCC
Q ss_conf 345
Q gi|254781112|r 167 LKS 169 (274)
Q Consensus 167 ~~~ 169 (274)
++.
T Consensus 175 ygL 177 (332)
T PRK11119 175 YGL 177 (332)
T ss_pred CCC
T ss_conf 799
No 71
>PRK09986 DNA-binding transcriptional activator XapR; Provisional
Probab=94.38 E-value=0.29 Score=27.47 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=103.7
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHH
Q ss_conf 589589996289987248704699848898852167899762-998555668988988643103221100-003675675
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQ 116 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~ 116 (274)
.++.|+||+.+.... ++..+++....++. ++++++......+..+.|.+|++|+.. .....+ .
T Consensus 79 ~~g~l~Ig~~~~~~~-------------~~l~~~l~~f~~~~P~i~v~i~~~~~~~~~~~l~~~~~D~a~~~~~~~~--~ 143 (278)
T PRK09986 79 EAGRIELGVVGTALW-------------GRMRPAMRHFLKENPNVEVLFREKSPSMQMALLERRELDAGIWRMALEP--N 143 (278)
T ss_pred CCCCEEEEECHHHHH-------------HHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEECCCCCC--C
T ss_conf 777336874216888-------------7642899999987898399999788699999997799758996377778--8
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEEC-CCHH----HHHHHCCCC---CCEEECCHHHHHHHH
Q ss_conf 420023332222222221112222----1111123343202310-1012----233201345---421336855777755
Q gi|254781112|r 117 KKYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQIL-GTDL----SRFAKELKS---HLVFSHNFEQSLQLL 184 (274)
Q Consensus 117 ~~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~~-g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l 184 (274)
..+. ..|......++++.++.+. .-+++||.+.++.... +... .......+. ....+++....+.++
T Consensus 144 ~~~~-~~~l~~~~~~~~~~~~hpla~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~V 222 (278)
T PRK09986 144 PGFT-SLRLHESAFAVAVPEEHLLASKSSVPLKALRNEYFVTLPSVHSDWGFLQRVCQQAGFSPQIIREVNEPQTVLAMV 222 (278)
T ss_pred CCCE-EEEEEECCCEEEECCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH
T ss_conf 7742-688774163799659873336999999998599979867998669999999997799851799999899999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 443210036655899999984587667326236776877079998189989999999999999
Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAI 247 (274)
Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l 247 (274)
.+|..=+ +.+.... +.... +....+..+..+..++++-++++. -..+.+.++.+
T Consensus 223 ~~G~Gia-ilp~~~~-----~~~~~-~v~~~Pl~~~~~~~~~lv~~~~~~--~p~~~~fi~~l 276 (278)
T PRK09986 223 SMGIGIT-LVADSYA-----QMPWP-GVVFRPLKERIPADLYIVYHQQQA--TPALEKLLAAL 276 (278)
T ss_pred HHCCEEE-EEHHHHH-----CCCCC-CEEEEECCCCCCEEEEEEECCCCC--CHHHHHHHHHH
T ss_conf 9799899-8417774-----23789-999998899980389999849999--99999999986
No 72
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=94.33 E-value=0.19 Score=28.63 Aligned_cols=61 Identities=13% Similarity=0.260 Sum_probs=40.5
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCC--CCCCCCCCCHHHHHHHHHCCCCCCCHHC
Q ss_conf 895899962899872487046998488988521678997629--9855566898898864310322110000
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLN--LKVEFFETAVSGLITGLDTNRYDVLVNV 109 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg--~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 109 (274)
-+.|.||+ ++.|...+..|=.+.+.+.+.+.|. -++.|+.++-+...++|++|++.++.-+
T Consensus 41 ~~~lpvAV---------VN~D~g~~~~g~~~~~G~~lv~~L~~~~~~~w~~vs~~~A~~gl~~G~yy~~i~I 103 (164)
T TIGR03061 41 LDNLPVAV---------VNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHFVSAKEAEKGLADGKYYMVITI 103 (164)
T ss_pred CCCCEEEE---------EECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCEEEEEEE
T ss_conf 57871899---------9778786508815228999999873388861798489999988864956999997
No 73
>TIGR00787 dctP TRAP transporter solute receptor, DctP family; InterPro: IPR004682 TRAP-T family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-positive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterised. This system is the DctPQM system of Rhodobacter capsulatus. DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterised.; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=94.28 E-value=0.045 Score=32.50 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=79.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 32222222221112222111112334320231010122332013454213368557777554432100366558999999
Q gi|254781112|r 124 PYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFL 203 (274)
Q Consensus 124 p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~ 203 (274)
.++..+.--++-.. ..+..++|++|.+|-+...-......+-.|....... ..+.+.+|.+|=||+ -...+...|-
T Consensus 118 ~~w~nG~R~~t~~~-~p~~~p~D~kGLKiRi~~s~~~~~~~~~lGA~P~~~~-F~EvY~ALq~gvVDg--qENP~s~~~s 193 (267)
T TIGR00787 118 AYWDNGFRQFTSSK-KPVTKPEDLKGLKIRIPASPVLEAQFKALGANPEPMA-FSEVYTALQTGVVDG--QENPLSNIYS 193 (267)
T ss_pred HHHHCCHHHHHCCC-CCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC-HHHHHHHHHCCCCCC--CCCCHHHHHH
T ss_conf 33233145422143-4124603325874025986899999997089984126-589999875481010--0467277621
Q ss_pred HHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 84587667326236776877079998189-----98999999999999997985999
Q gi|254781112|r 204 ERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEILCAIHLDGTYKK 255 (274)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l~~l~~~G~~~~ 255 (274)
.+...-.+...+. -..-.++.+.+++. .++|+..|.++. ++.|+|++
T Consensus 194 ~KlYEVqKyL~~t--nH~y~g~~v~~n~~~w~~L~~dl~~~~~~A~---~ea~~~~~ 245 (267)
T TIGR00787 194 SKLYEVQKYLSLT--NHGYLGYLVVVNKAFWKSLPPDLQAVVKEAA---KEATEYQR 245 (267)
T ss_pred HHHHHHHHHHHHH--HHHHCCCCEEEEHHHHHCCCHHHHHHHHHHH---HHHHHHHH
T ss_conf 0212364345331--0303262027503674318788999999999---99999888
No 74
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=94.20 E-value=0.44 Score=26.37 Aligned_cols=216 Identities=13% Similarity=0.133 Sum_probs=102.8
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCC-H----HHHHHHHHCCCCCCCHHCC-CCH
Q ss_conf 895899962899872487046998488988521678997629985556689-8----8988643103221100003-675
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETA-V----SGLITGLDTNRYDVLVNVA-ITP 113 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~-~----~~~~~~l~~g~~D~~~~~~-~t~ 113 (274)
.++|+|.+...| ... -|-...+.++.-++.+++++|+... - +|+...=.+-+.|++.|+. ..-
T Consensus 25 t~~LtVytydSF-----~~e------wg~Gp~vk~~FE~~~~~~v~fV~~~d~v~llnRl~leg~~~~ADvvvGldn~~l 93 (336)
T COG4143 25 TPTLTVYTYDSF-----ASE------WGPGPKVKKAFEAEYGCKVNFVALGDGVELLNRLILEGKNPKADVVVGLDNNLL 93 (336)
T ss_pred CCEEEEEEEEEE-----ECC------CCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEECCHHHH
T ss_conf 853899997634-----225------688578999999985952899970758999999997078988858993472778
Q ss_pred HHHHHHCCC----------------------CCCCCCCCCCCCCCCC--CCCCCCCCCCC----CCEEEEC------C--
Q ss_conf 675420023----------------------3322222222211122--22111112334----3202310------1--
Q gi|254781112|r 114 ERQKKYDFS----------------------IPYIAHRVLLVVRSDQ--QDIRSFKDLTD----KTVAQIL------G-- 157 (274)
Q Consensus 114 eR~~~~~fs----------------------~p~~~~~~~~~~~~~~--~~~~~~~dL~g----~~V~~~~------g-- 157 (274)
+|.+...+- .||-..-..++..++. ..-++++||.. .+|.++. |
T Consensus 94 ~~A~~~~lf~~~~~d~~~~~vp~~~~~d~f~~P~DyGy~a~vYd~~~~~~ppksL~dL~~~~y~~~ii~qdPrtSspGl~ 173 (336)
T COG4143 94 ARARETGLFAPYGVDASDVPVPEGWKIDTFALPYDYGYFAFVYDKTKLKNPPKSLKDLVEPEYAGKIIYQDPRTSSPGLG 173 (336)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHCCCCCCHHHHCCCCCCCCEEECCCCCCCCCHH
T ss_conf 88885587666789855788876535675101245412899976577528762689863851269578069887884078
Q ss_pred ---C---HH--H---HHHHCCCCC-CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CC--CCCCC
Q ss_conf ---0---12--2---332013454-213368557777554432100366558999999845876673262-36--77687
Q gi|254781112|r 158 ---T---DL--S---RFAKELKSH-LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKI-AD--RMKDN 222 (274)
Q Consensus 158 ---~---~~--~---~~l~~~~~~-~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~ 222 (274)
+ .+ + ++-++...+ +...++=.+++.++..|+.+.++.-...-.+.+.-.... ..... +. ...+.
T Consensus 174 fLlW~~svyg~d~~~~~W~kL~~~~v~v~~gWSeaY~aFt~GEap~VLSYtTspay~~~~~~~~-~~~a~~f~eG~ylqi 252 (336)
T COG4143 174 FLLWTISVYGEDGAPEAWAKLADNGVTVTKGWSEAYGAFTKGEAPLVLSYTTSPAYHVYPEKKD-RYAAALFPEGHYLQV 252 (336)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCHHCCCCCCC-CCCHHCCCCCCEEEE
T ss_conf 8999987636231899999998588686586798898874786557998606822102532002-210011788853677
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHH--HHC-CCCCCCCCCC
Q ss_conf 707999818998999999999999997985999998--767-8887756898
Q gi|254781112|r 223 SAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFD--RYF-DKNIISSVPG 271 (274)
Q Consensus 223 ~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~--kw~-g~d~~~~~~~ 271 (274)
++.+..-+..+++|.+.|=+.+ -|++.++++- .|. =..-+.++|+
T Consensus 253 Egaa~~k~~knp~LA~~F~~Fm----lS~e~Q~~ip~~nwm~Pa~~~~~Lp~ 300 (336)
T COG4143 253 EGAAVLKGAKNPELADKFLQFM----LSPEFQDAIPTTNWMYPAVKNVPLPA 300 (336)
T ss_pred EEEEECCCCCCHHHHHHHHHHH----HCHHHHHHCCCCCEEEECCCCCCCCH
T ss_conf 6653112799879999999997----09877840784543323478986877
No 75
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=94.11 E-value=0.46 Score=26.25 Aligned_cols=187 Identities=19% Similarity=0.129 Sum_probs=94.0
Q ss_pred EHHHHHHHCCCCCCCCCCC-HHHHHHHHHCCC--CCCCHHCCCCHH------------------------HHH-------
Q ss_conf 1678997629985556689-889886431032--211000036756------------------------754-------
Q gi|254781112|r 72 LIKEVAHRLNLKVEFFETA-VSGLITGLDTNR--YDVLVNVAITPE------------------------RQK------- 117 (274)
Q Consensus 72 l~~~i~~~lg~~~~~~~~~-~~~~~~~l~~g~--~D~~~~~~~t~e------------------------R~~------- 117 (274)
+++...+++|++|.+...+ ++.+...++.|. +|++..-..... +-.
T Consensus 47 ~~~~F~k~tGi~V~~~~~~sne~~~ak~~~g~~~~Dvv~~s~~~~~~~~~~gll~~lD~skl~n~~~l~~~~~~~~~~d~ 126 (363)
T COG0687 47 LLKPFEKETGIKVVYDTFDSNEEMLAKLKAGGGGYDVVVPSGYFVARLIKEGLLQPLDKSKLPNWKNLDPEFLNPPKFDP 126 (363)
T ss_pred HHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCC
T ss_conf 89989999899799953898699999998089998879718889999986675675896666482116987835776788
Q ss_pred HHCCCCCCCCCCCCCCCCCCCC----CCCCCCCC---------CCCCEEEEC-------------C----CHHHH-----
Q ss_conf 2002333222222222111222----21111123---------343202310-------------1----01223-----
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQ----DIRSFKDL---------TDKTVAQIL-------------G----TDLSR----- 162 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~----~~~~~~dL---------~g~~V~~~~-------------g----~~~~~----- 162 (274)
.-.|+-||+....++..+++.- ..++++|| +|+++.... | +..++
T Consensus 127 g~~y~vPy~~g~t~i~Yn~~~~~~~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~~~~~~~~~a 206 (363)
T COG0687 127 GNKYSVPYFWGTTGIAYNTDKVKDAPPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPEDLKKA 206 (363)
T ss_pred CCEECEEEEEEEEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 88603167886469999800058999998899983842002232575301366057899999971899788998899999
Q ss_pred --HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC--HHHHH
Q ss_conf --32013454213368557777554432100366558999999845876673262367768770799981899--89999
Q gi|254781112|r 163 --FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN--NKLTR 238 (274)
Q Consensus 163 --~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~L~~ 238 (274)
.+.+.+.-.+.+.+..+..+.|.+|++++.++-.-.+.............+..+.+-..--.-.++++|+. ++...
T Consensus 207 ~~~L~~~kp~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~~~~~~~i~~~~p~eG~~~w~D~~~ipk~a~n~~~A~ 286 (363)
T COG0687 207 FDLLDKLKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILWFDNLAIPKGAKNVDAAY 286 (363)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHCCCEEEEEEECHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHH
T ss_conf 99999727850899636278889866997899977778999862558980577347887347878899879999989999
Q ss_pred -HHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf -9999999999798599999876788
Q gi|254781112|r 239 -SINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 239 -~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
.||..+. .+..+...++.+.
T Consensus 287 ~fInf~~~-----pe~~a~~~~~~~y 307 (363)
T COG0687 287 KFINFLLD-----PEVAAKLAEFVGY 307 (363)
T ss_pred HHHHHHCC-----HHHHHHHHHHHCC
T ss_conf 99998519-----8999999873267
No 76
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=93.89 E-value=0.51 Score=26.00 Aligned_cols=206 Identities=13% Similarity=0.115 Sum_probs=92.4
Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHH----HCCCCCCCHHCCC-
Q ss_conf 8589589996289987248704699848898852167899762998555668-988988643----1032211000036-
Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGL----DTNRYDVLVNVAI- 111 (274)
Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l----~~g~~D~~~~~~~- 111 (274)
.+.++|+|.+...|. .| - |-...|.++.-++.|++|+++.. +-..++.-| .+...|++.++..
T Consensus 16 ~~~~~l~vyt~dsf~------~d-~----g~~~~l~~~Fek~tGikV~~v~~~dg~~ll~Rl~~Eg~np~ADVv~gvD~~ 84 (326)
T PRK11205 16 FAKPVLTVYTYDSFA------AD-W----GPGPAVKKAFEAECGCELKFVALEDGVSLLNRLRLEGKNSKADVVLGLDNN 84 (326)
T ss_pred CCCCEEEEEECCCCC------CC-C----CCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEECCHH
T ss_conf 029879999665444------46-6----864799999989879689999679679999999973899976589981767
Q ss_pred CHHHHHHHC-----------------CCCC----CCCCCCCCCCCCCC--CCCCCCCCCCC----CCEEEEC--CCH--H
Q ss_conf 756754200-----------------2333----22222222211122--22111112334----3202310--101--2
Q gi|254781112|r 112 TPERQKKYD-----------------FSIP----YIAHRVLLVVRSDQ--QDIRSFKDLTD----KTVAQIL--GTD--L 160 (274)
Q Consensus 112 t~eR~~~~~-----------------fs~p----~~~~~~~~~~~~~~--~~~~~~~dL~g----~~V~~~~--g~~--~ 160 (274)
.-.|...-. |.++ |-....+++..++. +..++++||.. .+|++.. .+. .
T Consensus 85 ~l~~A~~~gl~~p~~s~~~~~~ip~~~~d~~~vp~d~g~~a~vYn~~~~~~~P~S~~DL~~p~~kgki~i~dP~tSs~g~ 164 (326)
T PRK11205 85 LLAAAKKTGLFAPSGVDTSAVTVPGGWNDDTFVPYDYGYFAFVYDKEKLKNPPKSLKELVESDQNWKVIYQDPRTSTPGL 164 (326)
T ss_pred HHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEECCCCCEEEEEEEHHHCCCCCCCHHHHHCCHHCCCEEECCCCCCCCHH
T ss_conf 89999986996525686110248600269852113476589998422237887698987273303886633888785279
Q ss_pred H--------------HHHHCCCCCCE-EECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCE
Q ss_conf 2--------------33201345421-33685577775544321003665589999998458766732623677687707
Q gi|254781112|r 161 S--------------RFAKELKSHLV-FSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAV 225 (274)
Q Consensus 161 ~--------------~~l~~~~~~~~-~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (274)
. ++-++...+.. ...+-.+++.++..|++|.++.-...-.+......................--
T Consensus 165 a~l~~~i~~~Ge~~~e~W~~L~~N~~~~~~gws~a~~~~~~Ge~~ivlsy~~spa~~~~~~~~~~~~~~~~~eG~~~~ie 244 (326)
T PRK11205 165 GLLLWMKKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGEADLVLSYTTSPAYHIIAEKKDNYAAANFSEGHYLQVE 244 (326)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCEEECCCCCEEEEE
T ss_conf 99999999716328999999986384447883388887644767579985147787764136665422445887277766
Q ss_pred EEEEECC--CHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 9998189--98999999999999997985999998
Q gi|254781112|r 226 AFMMRKG--NNKLTRSINEILCAIHLDGTYKKIFD 258 (274)
Q Consensus 226 ~~~~~k~--~~~L~~~in~~l~~l~~~G~~~~I~~ 258 (274)
+.++-|+ |++....|=..|. |.+.++++.
T Consensus 245 gagI~k~akn~e~A~kFidfll----S~eaQ~~~~ 275 (326)
T PRK11205 245 VAARTAASKQPELAQKFLQFMV----SPAFQNAIP 275 (326)
T ss_pred EEEEECCCCCHHHHHHHHHHHC----CHHHHHHHH
T ss_conf 7898379999899999999975----899999864
No 77
>PRK11013 DNA-binding transcriptional regulator LysR; Provisional
Probab=93.42 E-value=0.61 Score=25.49 Aligned_cols=173 Identities=9% Similarity=0.080 Sum_probs=94.7
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
..|.|+||+.+.+.. ++...++....++. ++++++...+...+.+.+.+|++|+......... .
T Consensus 92 ~~G~lri~~~~~~~~-------------~~lp~~l~~f~~~~P~v~v~i~~~~~~~~~~~l~~~~~Dl~l~~~~~~~--~ 156 (309)
T PRK11013 92 RQGQLSIACLPVFSQ-------------SLLPGLCQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTP--A 156 (309)
T ss_pred CCCCCCCCCCHHHHH-------------HHCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCC--C
T ss_conf 367656530067898-------------8665231567843898079999898599999997599778996078899--8
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE-ECCCHHH----HHHHCCCC---CCEEECCHHHHHHHHH
Q ss_conf 20023332222222221112222----11111233432023-1010122----33201345---4213368557777554
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQ-ILGTDLS----RFAKELKS---HLVFSHNFEQSLQLLL 185 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~-~~g~~~~----~~l~~~~~---~~~~~~~~~~~~~~l~ 185 (274)
.. -..|.+.....+++.++.+. .-+++||.+..... ..++.+. .+..+.+. ...+.++......++.
T Consensus 157 ~~-~~~~l~~~~~~~v~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~r~~~~~~~~~~g~~~~~~~e~~~~~~~~~lV~ 235 (309)
T PRK11013 157 GT-ERTELLTLDEVCVLPDGHPLAAKKVLTPDDFQGENFISLSRTDSYRQLLDQLFAEHGVKRRMVVETHSAASVCAMVR 235 (309)
T ss_pred CC-EEEEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 75-78886420146754789800049999999973898696389994999999999976999776999896999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC
Q ss_conf 432100366558999999845876673262367768770799981899
Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 233 (274)
.|-.= .+.+...+..+... ...+. +..+..+..+++..+++.
T Consensus 236 ~G~Gv-ail~~~~~~~~~~~----g~~~~-pl~~~~~~~~~lv~~~~r 277 (309)
T PRK11013 236 AGLGV-SIVNPLTALDYAGS----GLVVR-PFSISVPFTVSLIRPLHR 277 (309)
T ss_pred HCCEE-EEECHHHHHHHHHC----CEEEE-ECCCCCCEEEEEEEECCC
T ss_conf 79969-99469999866219----90999-888899618999998999
No 78
>PRK11233 nitrogen assimilation transcriptional regulator; Provisional
Probab=92.99 E-value=0.71 Score=25.09 Aligned_cols=193 Identities=11% Similarity=0.091 Sum_probs=104.3
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
.+|.++||+.+..... .+...++..+.++. ++++++...+...+.+.|.+|++|+.......+ ..
T Consensus 89 ~~G~l~ig~~p~~~~~------------~l~~p~l~~f~~~~P~v~v~l~~~~~~~l~~~l~~g~~Dlai~~~~~~--~~ 154 (305)
T PRK11233 89 LSGQVSIGLAPGTAAS------------SITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINGQLDMAVIYEHSP--VA 154 (305)
T ss_pred CCCEEEEEEECCHHHH------------HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEEEECCCC--CC
T ss_conf 7404999996215566------------536999999999789429997238879999998769847999827989--88
Q ss_pred HHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEEEC-CCHHH----HHHHCCCC--C-CEEECCHHHHHHHHHHHH
Q ss_conf 2002333222222222111222-21111123343202310-10122----33201345--4-213368557777554432
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQ-DIRSFKDLTDKTVAQIL-GTDLS----RFAKELKS--H-LVFSHNFEQSLQLLLSKR 188 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~-~~~~~~dL~g~~V~~~~-g~~~~----~~l~~~~~--~-~~~~~~~~~~~~~l~~gr 188 (274)
.+ -+.|+...+.+++.+.+.+ .--++.||.+..+.... ++... ......+. + ..++++......++..|-
T Consensus 155 ~l-~~~~l~~~~l~lv~~~~~p~~~i~l~~l~~~~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~i~~~V~~G~ 233 (305)
T PRK11233 155 GV-SSQALLKEDLFLVGTQDCPGQSVDLNAIAQMNLFLPRDYSAVRLRVDEAFSLRRLTAKVIGEIESIATLTAAIASGM 233 (305)
T ss_pred CC-EEEEEEECCEEEEECCCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 82-89999853589998477887878999980899898799984999999999977999847999996999999999799
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCH--HHHHHHHHHHHHHHHC
Q ss_conf 1003665589999998458766732623677687707999818998--9999999999999979
Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNN--KLTRSINEILCAIHLD 250 (274)
Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~L~~~in~~l~~l~~~ 250 (274)
.= .+.+...+..+.... ......+ ..+....++++..+++.+ .-...+-+.|.++..+
T Consensus 234 Gi-ailP~~~~~~~~~~~--~~~~~~~-~~p~~~~~~~l~~~~~r~lspaa~af~d~L~~~~~~ 293 (305)
T PRK11233 234 GV-TVLPESAARSLCGAV--NGWMSRI-TTPSMSLSLSLNLSARANLSPQAQAVKEILLSLISS 293 (305)
T ss_pred EE-EEEHHHHHHHHHHCC--CEEEEEC-CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 78-987199999875349--7699925-999866599999989098899999999999997747
No 79
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=92.74 E-value=0.77 Score=24.87 Aligned_cols=175 Identities=12% Similarity=0.131 Sum_probs=100.2
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH
Q ss_conf 8958999628998724870469984889885216789976-299855566898898864310322110000367567542
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274)
.+.|+||+.. ++ + ..+++..+.++ -++++++...+...+++.|.+|++|++...... ....
T Consensus 86 ~g~l~ig~~~---~~-~------------l~~~l~~f~~~~P~v~i~i~~~~~~~~~~~L~~~~~Di~i~~~~~--~~~~ 147 (279)
T TIGR03339 86 EGSLRIAATA---PY-Y------------VLDLVARFRQRYPGIEVSVRIGNSQEVLQALQSYRVDVAVSSEVV--DDPR 147 (279)
T ss_pred CCEEEECCCH---HH-H------------HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCC--CCCC
T ss_conf 4516861751---77-8------------999999999858986057895580877754025965899972788--9998
Q ss_pred HCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE-ECCCHHH----HHHHCCCC---CCEEECCHHHHHHHHHH
Q ss_conf 0023332222222221112222----11111233432023-1010122----33201345---42133685577775544
Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQ-ILGTDLS----RFAKELKS---HLVFSHNFEQSLQLLLS 186 (274)
Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~-~~g~~~~----~~l~~~~~---~~~~~~~~~~~~~~l~~ 186 (274)
+ .+.|+...+.++++.++.+. --+++||.+.+... ..|+... ....+.+. .....++......++.+
T Consensus 148 ~-~~~~l~~~~~~~~~~~~~~la~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 226 (279)
T TIGR03339 148 L-DRVVLGNDPLVAVVHRQHPLAERESVTLEELAGQPLLMREPGSVTRQTTEEALAAAGVAPRPALEIGSREAIREAVLA 226 (279)
T ss_pred E-EEEEEECCCEEEEEECCCHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH
T ss_conf 3-999940444899991886332399999999769998982899839999999999779987536778969999999997
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC---CHHHHHHH
Q ss_conf 3210036655899999984587667326236776877079998189---98999999
Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG---NNKLTRSI 240 (274)
Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~~~L~~~i 240 (274)
|..=+ +.+...+ ...+. -..++ ...+.....++++.+|+ +|.....+
T Consensus 227 G~Gia-ilP~~~v----~~~~~-l~~~p-l~~~~~~~~~~l~~~~~r~~sp~~~aFi 276 (279)
T TIGR03339 227 GLGVS-VVSAAEV----GRDPR-LRVLP-IVGAEPTMDEYLYCLKERRGARLIAAFL 276 (279)
T ss_pred CCEEE-EEEHHHH----HHCCC-EEEEE-CCCCCCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 99389-7148996----10989-89998-9888986279999989986899999999
No 80
>COG1511 Predicted membrane protein [Function unknown]
Probab=92.70 E-value=0.78 Score=24.84 Aligned_cols=57 Identities=12% Similarity=0.306 Sum_probs=39.7
Q ss_pred CEEEEEECCCCCEEEEEEEEHHHHHHHCC--CCCCCCCCCHHHHHHHHHCCCCCCCHHC
Q ss_conf 72487046998488988521678997629--9855566898898864310322110000
Q gi|254781112|r 53 PHSFHAQDGRGELTGFDIDLIKEVAHRLN--LKVEFFETAVSGLITGLDTNRYDVLVNV 109 (274)
Q Consensus 53 P~~~~~~d~~g~~~G~~~dl~~~i~~~lg--~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 109 (274)
|-..++.|....+.|-.+++.+.+.+.+. -+++|+.++-....++++.|+++++.-+
T Consensus 50 pVAVVNeDkg~t~~Gk~~~iG~~~V~~L~kn~~~~w~fVs~~~A~~gl~~g~Yya~i~I 108 (780)
T COG1511 50 PVAVVNEDKGATFNGKKVNIGDDLVKTLKKNKSLDWHFVSREEAEKGLKDGKYYAVIYI 108 (780)
T ss_pred CEEEEECCCCCCCCCCEEEHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHCCCEEEEEE
T ss_conf 46998577666647751107899999860688986289678989867760784399983
No 81
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=92.67 E-value=0.15 Score=29.22 Aligned_cols=131 Identities=17% Similarity=0.136 Sum_probs=72.3
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHC--CCCH
Q ss_conf 78858958999628998724870469984889885216789976299855566898898864310322110000--3675
Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNV--AITP 113 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~--~~t~ 113 (274)
....-++++++. .+|.. +. +...+++.+.+.+|++++.++.+..-++..|.+|++|+..+. ..++
T Consensus 26 ~~~~~~tV~~a~-~~W~s-------~~-----~~t~v~~~iLk~~Gy~v~~~~~~~~~~~~sla~gd~D~~~~~W~p~~~ 92 (302)
T COG2113 26 AAEAGKTVRIAD-VGWTS-------GT-----ATTNVAKKILKGLGYTVELVTLDTAVMYQSLAKGDLDVFPEAWLPTTP 92 (302)
T ss_pred CCCCCCEEEEEE-CCCCH-------HH-----HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCEECCCCH
T ss_conf 345588258843-69617-------89-----999999999996799624665559999999973797532010268875
Q ss_pred H-----HHHHHCCCCC-CC-CCCCCCCCCCCCC--CCCCCCCC-------CCCCEEEECCCHHH----HHHHCCCC---C
Q ss_conf 6-----7542002333-22-2222222111222--21111123-------34320231010122----33201345---4
Q gi|254781112|r 114 E-----RQKKYDFSIP-YI-AHRVLLVVRSDQQ--DIRSFKDL-------TDKTVAQILGTDLS----RFAKELKS---H 170 (274)
Q Consensus 114 e-----R~~~~~fs~p-~~-~~~~~~~~~~~~~--~~~~~~dL-------~g~~V~~~~g~~~~----~~l~~~~~---~ 170 (274)
+ .++......+ .+ -....+.+++--. .+++++|+ .|+-++...|+... ..++..+. .
T Consensus 93 ~~~~~~~~~~~v~~~~~~~~Ga~~g~~vp~y~~d~~iksi~D~~~~~d~~~g~i~g~~pG~g~~~~~~~~~k~y~~~~~~ 172 (302)
T COG2113 93 DDYKKAVKDKKVELGGTNLEGAKQGWAVPKYVADAGIKSIADLAKFKDKFGGKIYGIEPGWGCMRVIEDAIKAYGLGLKG 172 (302)
T ss_pred HHHHHHHCCCCEEECCCCCCCCEEEEEECEEHHHCCCCCHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 88998742685441354667724789824003423556565698666877785781589973548999998643655364
Q ss_pred CEEECCHHH
Q ss_conf 213368557
Q gi|254781112|r 171 LVFSHNFEQ 179 (274)
Q Consensus 171 ~~~~~~~~~ 179 (274)
...+++..+
T Consensus 173 ~~lv~~s~~ 181 (302)
T COG2113 173 FELVESSEA 181 (302)
T ss_pred EEEECCCHH
T ss_conf 488447478
No 82
>TIGR00212 hemC porphobilinogen deaminase; InterPro: IPR000860 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents hydroxymethylbilane synthase (or porphobilinogen deaminase, 2.5.1.61 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain . The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis , . A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) . ; GO: 0004418 hydroxymethylbilane synthase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=92.34 E-value=0.57 Score=25.70 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=75.2
Q ss_pred HHHHHHHCCCCCCCH-HC----CCC-HHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCEEEECCCHH
Q ss_conf 988643103221100-00----367-56754200233322222222211122------2211111233432023101012
Q gi|254781112|r 93 GLITGLDTNRYDVLV-NV----AIT-PERQKKYDFSIPYIAHRVLLVVRSDQ------QDIRSFKDLTDKTVAQILGTDL 160 (274)
Q Consensus 93 ~~~~~l~~g~~D~~~-~~----~~t-~eR~~~~~fs~p~~~~~~~~~~~~~~------~~~~~~~dL~g~~V~~~~g~~~ 160 (274)
++.++|.+|++|++. |+ +.. ++. . .=.+|..|.+. ..+.++++|- =|...||+.
T Consensus 62 Ele~aLL~geiD~AVHSlKD~P~~~~~~g---L--------~~~a~~~RedP~D~l~s~~~~~l~~LP---~GA~vGTSS 127 (312)
T TIGR00212 62 ELEQALLDGEIDLAVHSLKDVPTVLSPEG---L--------EIAAVLKREDPRDVLVSRKYLSLEELP---QGAKVGTSS 127 (312)
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCC---C--------EEEEECCCCCCCCEEEECCCCCHHHCC---CCCEEECCH
T ss_conf 99999625984488843023576559888---2--------786355878864268862788851277---988897457
Q ss_pred HH---HHHC--CCCCCEEEC-CHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHCCCCC-CCEE-----ECCCCCCCCCEEE
Q ss_conf 23---3201--345421336-85577775544-321003665589999998458766-7326-----2367768770799
Q gi|254781112|r 161 SR---FAKE--LKSHLVFSH-NFEQSLQLLLS-KRTDATMIPDIPFFNFLERRPHDG-NLFK-----IADRMKDNSAVAF 227 (274)
Q Consensus 161 ~~---~l~~--~~~~~~~~~-~~~~~~~~l~~-grvD~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~ 227 (274)
-+ +++. +..+++... |.+.-++.|.. |++||++.... .+.+....+ -+.. ...+...+.-+++
T Consensus 128 ~RR~aql~~~RPDl~~~~lRGNi~TRl~Kl~~Gg~~DAiiLA~A----GL~RLg~~~~~i~~~~~~~~~~PA~GQG~i~v 203 (312)
T TIGR00212 128 LRRKAQLKALRPDLEIEPLRGNIDTRLRKLDEGGEYDAIILAAA----GLKRLGLENDVITEVLDPEVMLPAVGQGAIAV 203 (312)
T ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHH----HHHCCCCCCHHHHHCCCHHHCCCCCCCCEEEE
T ss_conf 99999998308994499746987999998518882048999888----75302541013431478114178866757999
Q ss_pred EEECCCHHHHHHHHH
Q ss_conf 981899899999999
Q gi|254781112|r 228 MMRKGNNKLTRSINE 242 (274)
Q Consensus 228 ~~~k~~~~L~~~in~ 242 (274)
.+|+++..+.+.+++
T Consensus 204 e~R~dD~~~~~il~~ 218 (312)
T TIGR00212 204 ECRKDDTEIKEILKE 218 (312)
T ss_pred EEECCCHHHHHHHHH
T ss_conf 984587799998620
No 83
>PRK03537 hypothetical protein; Provisional
Probab=92.16 E-value=0.47 Score=26.17 Aligned_cols=135 Identities=13% Similarity=0.144 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCC-CC--CCCEEEE------CCCHHHHHHHCC-----C------C---------CCE
Q ss_conf 33222222222111222-2111112-33--4320231------010122332013-----4------5---------421
Q gi|254781112|r 123 IPYIAHRVLLVVRSDQQ-DIRSFKD-LT--DKTVAQI------LGTDLSRFAKEL-----K------S---------HLV 172 (274)
Q Consensus 123 ~p~~~~~~~~~~~~~~~-~~~~~~d-L~--g~~V~~~------~g~~~~~~l~~~-----~------~---------~~~ 172 (274)
.+|-....++++|++.+ .+.++.| |. +.|||+. .|....+++.+. + . +..
T Consensus 17 ~~Fa~N~Lvliv~~~~~~~~~~~ld~L~~p~~ri~~stP~~dP~G~Ya~~~l~~a~~~~~g~~~~l~~ka~~lvgg~~s~ 96 (188)
T PRK03537 17 VMFARNRLCAIARADVMLTSENLLDLLLDPDIRLGTSTPGADPSGDYAWQLFDRAEALKAGAGEALRTKALQLVGGPNSA 96 (188)
T ss_pred EEEECCCEEEEECCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 45332868999728987674468888439974998269998972489999999887527761789999887741776566
Q ss_pred EECCHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf 3368557777-554432100366558999999845876673262367768770799981899899999999999999798
Q gi|254781112|r 173 FSHNFEQSLQ-LLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDG 251 (274)
Q Consensus 173 ~~~~~~~~~~-~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G 251 (274)
...+...... .+..|++|+.+.-...+.....+.+. -..+.++.+......|++++.++..+- -+.+.+..-|.
T Consensus 97 ~~p~gr~~~~~~~~~geaDa~ivY~TdA~~a~~~~~~-l~~v~iP~~~~~~~~Y~iav~~~a~~~----A~~f~~flls~ 171 (188)
T PRK03537 97 PIPAGRNAYEWLIENKQADIFIGYCTSAALALKEVPD-LQIVDLPEPLAVGANYGLAVLKDASEA----ARPLAEFILSP 171 (188)
T ss_pred CCCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHCCCC-CEEEECCCCCCCCCCEEEEECCCCCHH----HHHHHHHHCCH
T ss_conf 6887520323331059745799985147878515898-549958800066632357873688099----99999997399
Q ss_pred HHHHHHHHH-CC
Q ss_conf 599999876-78
Q gi|254781112|r 252 TYKKIFDRY-FD 262 (274)
Q Consensus 252 ~~~~I~~kw-~g 262 (274)
+-++|+++| |.
T Consensus 172 ~gQ~iL~~~GF~ 183 (188)
T PRK03537 172 KGQAILAQYGFS 183 (188)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999980899
No 84
>PRK09508 leuO leucine transcriptional activator; Reviewed
Probab=91.59 E-value=1.1 Score=24.02 Aligned_cols=155 Identities=9% Similarity=0.105 Sum_probs=86.0
Q ss_pred EEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCC
Q ss_conf 2167899762-99855566898898864310322110000367567542002333222222222111222211---1112
Q gi|254781112|r 71 DLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIR---SFKD 146 (274)
Q Consensus 71 dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~---~~~d 146 (274)
.++..+.+.. ++++++.........+.|.+|++|++.+..... ...+ -+.|++.+..+++++++.+... +.++
T Consensus 129 ~ll~~~~~~~P~v~l~~~~~~~~~~~~~L~~g~iDl~I~~~~~~--~~~~-~~~~L~~d~~v~v~~~~HP~~~~~lt~~~ 205 (314)
T PRK09508 129 QIYNRIEQIAPNIHLVFKSSLNQNIEHQLRYQETEFVISYEEFD--RPEF-TSVPLFKDELVLVASKNHPRIKGPILEEQ 205 (314)
T ss_pred HHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEECCCCC--CCCC-EEEEEEECCEEEEECCCCCCCCCCCCHHH
T ss_conf 99999998689977999857706499999769952999678779--9873-48999724649998299976789999999
Q ss_pred CCCCCEEEE--CCC--HHHHHHHCCCC--C-CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 334320231--010--12233201345--4-2133685577775544321003665589999998458766732623677
Q gi|254781112|r 147 LTDKTVAQI--LGT--DLSRFAKELKS--H-LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRM 219 (274)
Q Consensus 147 L~g~~V~~~--~g~--~~~~~l~~~~~--~-~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (274)
+....-.+. .|. ..+.++.+.+. + .....+.......+..+..= .+++...+..+..+.+.. ....+..
T Consensus 206 ~~~~~hv~~s~~~~~~~~~~~l~~~~~~r~i~~~~~s~~~~~~lv~~td~i-a~lP~~~a~~~~~~~~l~---~~~lP~~ 281 (314)
T PRK09508 206 LYNEQHAVVSLDRFASFSQPWYDTVDKQASIAYQGMALSSVLNVVSQTHLV-AIAPRWLAEEFAESLELQ---ILPLPLK 281 (314)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCEE-EHHHHHHHHHHHHCCCCE---EECCCCC
T ss_conf 961998899639988589999995798631899958899999999839977-589999999864429957---9789989
Q ss_pred CCCCCEEEEEECC
Q ss_conf 6877079998189
Q gi|254781112|r 220 KDNSAVAFMMRKG 232 (274)
Q Consensus 220 ~~~~~~~~~~~k~ 232 (274)
.....+++.-++.
T Consensus 282 ~~~~~~~l~WH~r 294 (314)
T PRK09508 282 NNSRTCYLSWHES 294 (314)
T ss_pred CCCEEEEEEECCC
T ss_conf 8873699997899
No 85
>PRK01066 porphobilinogen deaminase; Provisional
Probab=91.56 E-value=1.1 Score=24.00 Aligned_cols=136 Identities=13% Similarity=0.044 Sum_probs=70.2
Q ss_pred HHHHHHHCCCCCCCH-HCC--CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCHHHH---HHH
Q ss_conf 988643103221100-003--6756754200233322222222211122221111123-343202310101223---320
Q gi|254781112|r 93 GLITGLDTNRYDVLV-NVA--ITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDL-TDKTVAQILGTDLSR---FAK 165 (274)
Q Consensus 93 ~~~~~l~~g~~D~~~-~~~--~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL-~g~~V~~~~g~~~~~---~l~ 165 (274)
++..+|.+|++|++. ++- ++++......+ .+--...-+++.+++ .++++| +|-+|| |...+ .++
T Consensus 80 ele~aLl~g~iDiAVHSlKDlP~~~~l~i~av-~~R~d~rDvLv~~~~----~~l~~lp~~a~IG----TSS~RR~aql~ 150 (234)
T PRK01066 80 DVDFLVLSGKCDLAIHSAKDLPEPPKLTVVAI-TAGLDPSDLLVYAEK----YLLQPLPKRPRIG----SSSLRREELLK 150 (234)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCEEEEE-ECCCCHHHHHHCCCC----CCCCCCCCCCEEE----CCCHHHHHHHH
T ss_conf 99999976987789871578899999768999-657898888760467----6412288668773----16661999999
Q ss_pred C--CCCCCEEE-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCC--CCCCEEEEEECCCHHHHHHH
Q ss_conf 1--34542133-6855777755443210036655899999984587667326236776--87707999818998999999
Q gi|254781112|r 166 E--LKSHLVFS-HNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMK--DNSAVAFMMRKGNNKLTRSI 240 (274)
Q Consensus 166 ~--~~~~~~~~-~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~~L~~~i 240 (274)
. +..+++.. .|.+..++.|.+|++|+++... ..+.+...........+++. .+..+++-.++++.++.+.+
T Consensus 151 ~~~pdl~i~~iRGNI~TRl~Kl~~g~~DaiILA~----AGL~RLgl~~~~~~~lp~~~~pgQGalaIe~R~dD~~~~~ll 226 (234)
T PRK01066 151 LLFPSGIILDIRGTIEERLKLLERGKYDAIVVAK----AAVLRLGLRLPYTIELPPPYHPLQGRLAITAKKHIAKWKTLF 226 (234)
T ss_pred HHCCCCCEEECCCCHHHHHHHHCCCCCCEEEHHH----HHHHHCCCCCCCEEECCCCCCCCCCCEEEEECCCCHHHHHHH
T ss_conf 8789997896408999999986178989533898----999875897754585589887886828899807979999999
Q ss_pred H
Q ss_conf 9
Q gi|254781112|r 241 N 241 (274)
Q Consensus 241 n 241 (274)
+
T Consensus 227 ~ 227 (234)
T PRK01066 227 L 227 (234)
T ss_pred H
T ss_conf 9
No 86
>pfam10613 Lig_chan-Glu_bd Ligated ion channel L-glutamate- and glycine-binding site. This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine. It is found in association with Lig_chan, pfam00060.
Probab=91.40 E-value=0.045 Score=32.48 Aligned_cols=31 Identities=29% Similarity=0.562 Sum_probs=26.0
Q ss_pred CCCCCEEEEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 6998488988521678997629985556689
Q gi|254781112|r 60 DGRGELTGFDIDLIKEVAHRLNLKVEFFETA 90 (274)
Q Consensus 60 d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~ 90 (274)
.++.++.||.+||++++++.+|+++++..++
T Consensus 13 ~G~~~yeGyciDLl~~ls~~l~F~y~~~~v~ 43 (65)
T pfam10613 13 TGNERFEGYCIDLLDELAKILGFNYEIYLVP 43 (65)
T ss_pred CCCCCEEEHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 8973240279999999999849749999778
No 87
>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional
Probab=90.97 E-value=1.2 Score=23.64 Aligned_cols=175 Identities=6% Similarity=0.052 Sum_probs=94.1
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
..|+|+||...... ..+..+++....++- ++++++...+...+++.|.+|++|+...... .....
T Consensus 65 ~~G~lri~~~~t~~-------------~~~lp~~l~~f~~~~P~v~~~l~~~~~~~~~~~l~~g~~D~ai~~~p-~~~~~ 130 (269)
T PRK11716 65 LSGELSLFCSVTAA-------------YSHLPPILDRFRAEHPLVEIKLTTGDAADAVEKVQSGEADLAIAAKP-ETLPS 130 (269)
T ss_pred CCCCEEEEECHHHH-------------HHHCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECC-CCCCC
T ss_conf 76626998514887-------------77546789999998889448984289999999998699558999378-78999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCEEEEC-CCH---HHHHHHCCCCC--C-EEECCHHHHHHHHH
Q ss_conf 200233322222222211122221-----111123343202310-101---22332013454--2-13368557777554
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDI-----RSFKDLTDKTVAQIL-GTD---LSRFAKELKSH--L-VFSHNFEQSLQLLL 185 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~-----~~~~dL~g~~V~~~~-g~~---~~~~l~~~~~~--~-~~~~~~~~~~~~l~ 185 (274)
.+. ..|+...+.+++++++.... ....|+....+.... |.. .+.+.++.+.. + .++.+.+....++.
T Consensus 131 ~l~-~~~l~~~~l~~v~p~~~~~~~~~~~~~~~dl~~~p~il~~~~~~r~~~~~~~~~~~~~p~i~~e~~~~~~i~~~V~ 209 (269)
T PRK11716 131 SLA-FSPIDEIPLVLIAPALPCPVRQQVSQEKPDWSRIPFILPEHGPARRRIDLWFRRHKIKPNIYAQVSGHEAIVSMVA 209 (269)
T ss_pred CEE-EEEEEEEEEEEEEECCCCHHHCCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 769-9996564189999788415436356884468338678158982799999999976999717999897999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEEEECCC
Q ss_conf 4321003665589999998458766732623-67768770799981899
Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~ 233 (274)
.|-.= .+.+...+ ...+.......+. .++..+..++++.+|+.
T Consensus 210 ~G~Gi-ailP~~~~----~~~~~~~~l~~l~~~~~~~~~~i~l~~~~~r 253 (269)
T PRK11716 210 LGCGV-GILPEVVL----DNSPVRDRVQRLEVPPELTPFELGVCCQKKR 253 (269)
T ss_pred HCCEE-EEHHHHHH----HCCCCCCCEEEEECCCCCCCEEEEEEEECCC
T ss_conf 79941-72059998----3275579889974899887369999997998
No 88
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional
Probab=90.74 E-value=1.3 Score=23.51 Aligned_cols=173 Identities=13% Similarity=0.066 Sum_probs=93.9
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
.++.|+||+.+.... .+..+++....++. ++++++........++.+.+|++|+....... ...
T Consensus 88 ~~~~l~ig~~~~~~~-------------~~lp~~l~~f~~~~P~v~v~l~~~~~~~~~~~l~~g~~D~~i~~~~~--~~~ 152 (296)
T PRK09906 88 EDRQLTIGFVPSAEV-------------NLLPKVLPMFRLRHPDTLIELVSLINTQQEEKLRRGELDVGFMRHPV--YSD 152 (296)
T ss_pred CCCEEEEEECHHHHH-------------HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCC--CCC
T ss_conf 771388321225699-------------99999999987408986348997580899999986997679873688--998
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEEC---CCHH----HHHHHCCCC---CCEEECCHHHHHHH
Q ss_conf 20023332222222221112222----1111123343202310---1012----233201345---42133685577775
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQIL---GTDL----SRFAKELKS---HLVFSHNFEQSLQL 183 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~~---g~~~----~~~l~~~~~---~~~~~~~~~~~~~~ 183 (274)
.+. +.|++..+.++++.++.+. --+++||.+....... +... ..+..+.+. .....++......+
T Consensus 153 ~l~-~~~l~~~~~~~~~~~~hpla~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~ 231 (296)
T PRK09906 153 EID-YLELLDEPLVVVLPVDHPLAHEKEITAAQLDGVNFISPDPAQSGSLAPIIKAWFAQHNSQPNIVQVATNILVTMNL 231 (296)
T ss_pred CEE-EEEEECCEEEEEEECCCCCCCCCCCCHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf 818-9985046079998289810059998999975998796366547609999999999779997469998989999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC
Q ss_conf 54432100366558999999845876673262367768770799981899
Q gi|254781112|r 184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 233 (274)
+..|-.= .+.+.... ....................++++-++++
T Consensus 232 v~~G~Gi-~~lP~~~~-----~~~~~~l~~~pl~~~~~~~~~~l~~r~~~ 275 (296)
T PRK09906 232 VGMGLGC-TIIPGYMN-----NFNTGQVVFRPLAGNVPSIALLMAWKKGE 275 (296)
T ss_pred HHHCCEE-EECHHHHH-----HHCCCCEEEEECCCCCCEEEEEEEECCCC
T ss_conf 9949899-98458773-----10689999998899987028999987999
No 89
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=89.73 E-value=1.6 Score=22.99 Aligned_cols=190 Identities=10% Similarity=0.089 Sum_probs=85.9
Q ss_pred EEHHHHHHH-CCCCCCCCCCCHHHHHH----HHHCCCCCCCHHCCCCH-HHHH--------------HH--CCCCC----
Q ss_conf 216789976-29985556689889886----43103221100003675-6754--------------20--02333----
Q gi|254781112|r 71 DLIKEVAHR-LNLKVEFFETAVSGLIT----GLDTNRYDVLVNVAITP-ERQK--------------KY--DFSIP---- 124 (274)
Q Consensus 71 dl~~~i~~~-lg~~~~~~~~~~~~~~~----~l~~g~~D~~~~~~~t~-eR~~--------------~~--~fs~p---- 124 (274)
.+++..-++ .|++|+++...-..++. .-.+.++|++++...+. .+.+ .+ .|.++
T Consensus 37 ~i~~~Fek~~tgIkV~~v~~~tgel~~rl~aEk~~p~aDV~~g~~~~~~~~~~~~gll~~y~~~~~~~l~~~~~d~~~~~ 116 (334)
T TIGR03261 37 KYKDAFEKVNPDIKINWVRDSTGIITAKLLAEKNNPQADVVWGLAASSLALLDKEGMLKPYKPKGLDALNPKFRDAKNPP 116 (334)
T ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCHHHCCHHHCCCCCCC
T ss_conf 99999997779948999989729999999964579986599845657899988604315777530544788652978885
Q ss_pred CCC----CCCCCCCCC------CCCCCCCCCCCCC----CCEEEE----CCCHHH---------------HHHHCCCCCC
Q ss_conf 222----222222111------2222111112334----320231----010122---------------3320134542
Q gi|254781112|r 125 YIA----HRVLLVVRS------DQQDIRSFKDLTD----KTVAQI----LGTDLS---------------RFAKELKSHL 171 (274)
Q Consensus 125 ~~~----~~~~~~~~~------~~~~~~~~~dL~g----~~V~~~----~g~~~~---------------~~l~~~~~~~ 171 (274)
++. ....+...+ +-+..++++||-. -+|++. .|+.+. ++++++..++
T Consensus 117 ~~~g~~~~~~~i~yN~~~~~~~~~p~P~sw~DL~dp~ykg~i~~~~p~~sg~~~~~l~~~~~~~G~d~g~~~l~~l~~N~ 196 (334)
T TIGR03261 117 HWVGMDAWMAAICFNTVEAKKKGLPKPTSWEDLTKPEYKGHIVMPNPASSGTGFLDVSAWLQMMGEDKGWDYMDKLHKNI 196 (334)
T ss_pred EEEEEEEEEEEEEEEHHHCCCCCCCCCCCHHHHCCHHHCCEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 16887524678997444404258999999999709474895873488863389999999999735288999999998632
Q ss_pred EEE-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHHHHHHHH
Q ss_conf 133-6855777755443210036655899999984587667326236776877079998189--9899999999999999
Q gi|254781112|r 172 VFS-HNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINEILCAIH 248 (274)
Q Consensus 172 ~~~-~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~~l~~l~ 248 (274)
..+ .+......++.+|++...+........... ... ...+..+.+-..-..-++++.|+ |++....|=..+
T Consensus 197 ~~~~~~~~~~~~~v~~Ge~~ig~~~~~~~~~~~~-~g~-pv~~v~P~eG~~~~~~~~~Ivk~a~n~~~Ak~Fidfl---- 270 (334)
T TIGR03261 197 AVYTHSGSKPCKLAGMGEFPIGISMAYRALKEKK-KGA-PIDVVFPKEGLGWDIEATAIIKGSKNNDAAKKLVDWS---- 270 (334)
T ss_pred CCCCCCCCHHHHHHHCCCEEEEEEECCHHHHHHH-CCC-CEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHH----
T ss_conf 4167776388899865985799973545788764-389-7338945898478773588887998989999999997----
Q ss_pred HCCHHHHHHHHHCCCCCC
Q ss_conf 798599999876788877
Q gi|254781112|r 249 LDGTYKKIFDRYFDKNII 266 (274)
Q Consensus 249 ~~G~~~~I~~kw~g~d~~ 266 (274)
-|-+.++++.+.+..-+.
T Consensus 271 lS~e~Q~~~a~~~~~p~~ 288 (334)
T TIGR03261 271 ISDEAMELYAKNYAVVAT 288 (334)
T ss_pred CCHHHHHHHHHCCEECCC
T ss_conf 699999999964903468
No 90
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ; InterPro: IPR012787 Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate . Members occur only in proteobacteria.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0019619 protocatechuate catabolic process, 0045941 positive regulation of transcription.
Probab=88.31 E-value=0.3 Score=27.37 Aligned_cols=192 Identities=17% Similarity=0.197 Sum_probs=107.7
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHH-HHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHH
Q ss_conf 8858958999628998724870469984889885216789-976299855566898898864310322110000367567
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEV-AHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPER 115 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i-~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR 115 (274)
..+..+++||.-++-+ . =+.++.++.+ .+.....+.+..-+..-+++.|+.|..|++.|=---||+
T Consensus 89 ~~~~~~~~~GaLPTVa------A-------~L~P~~~~~f~~~~p~~~~~i~tG~n~~Lld~LR~G~LDlVvGRL~ape~ 155 (300)
T TIGR02424 89 EGEGPTVRVGALPTVA------A-------RLMPEVVKRFLAEAPRLRLRIVTGENAYLLDQLRVGELDLVVGRLGAPET 155 (300)
T ss_pred HCCCCEEEECCCHHHH------H-------HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 1489648972646689------9-------99999999999616895589987785787987228980277606888321
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCEEEE-CCCHHHHHHH----CCCC----CCEEECCHHHHHH
Q ss_conf 542002333222222222111222211----1112334320231-0101223320----1345----4213368557777
Q gi|254781112|r 116 QKKYDFSIPYIAHRVLLVVRSDQQDIR----SFKDLTDKTVAQI-LGTDLSRFAK----ELKS----HLVFSHNFEQSLQ 182 (274)
Q Consensus 116 ~~~~~fs~p~~~~~~~~~~~~~~~~~~----~~~dL~g~~V~~~-~g~~~~~~l~----~~~~----~~~~~~~~~~~~~ 182 (274)
-+.+.| ++.|..+..+++|+|++... +.+.|..+-|-.+ .|++.-.+++ +.|. ..++.-|..=+=+
T Consensus 156 MqGl~F-e~LY~E~v~~VVragHPL~~~p~~~~~~L~~yPvl~P~~g~~IR~~~erll~a~G~~~l~~r~EtvS~~fgR~ 234 (300)
T TIGR02424 156 MQGLSF-EHLYNERVVFVVRAGHPLLAAPSLSVASLADYPVLLPPEGSIIRPLVERLLIACGIPALPQRIETVSDSFGRR 234 (300)
T ss_pred HCCCCC-CCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 158642-5144773378870857855788777788733881048622267999999998747655660134431578877
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCCH--HHHHHHHHHHHHH
Q ss_conf 554432100366558999999845876673262-3677687707999818998--9999999999999
Q gi|254781112|r 183 LLLSKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGNN--KLTRSINEILCAI 247 (274)
Q Consensus 183 ~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~--~L~~~in~~l~~l 247 (274)
-+..... .|+++.-.+..-+ .++..... .+.-....+.|+..|.+.+ .=+..+-++|...
T Consensus 235 y~~~sdA-~WiiS~gvv~~dl----~~G~L~~Lp~~~~~t~GPVGL~~R~d~~~s~aaq~f~~alr~~ 297 (300)
T TIGR02424 235 YVRESDA-VWIISEGVVAKDL----ADGTLVELPVDTRETAGPVGLCTRPDEQLSRAAQLFVDALRSA 297 (300)
T ss_pred HHHHCCC-EEECCHHHHHHHH----CCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 7645472-5772667898875----2892776465757788770215488877898999999999998
No 91
>pfam00405 Transferrin Transferrin.
Probab=87.68 E-value=2.1 Score=22.13 Aligned_cols=113 Identities=11% Similarity=0.126 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHCCCCCCCH---HCCCCHHHHHHHC---CC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-
Q ss_conf 68988988643103221100---0036756754200---23-------3322222222211122221111123343202-
Q gi|254781112|r 88 ETAVSGLITGLDTNRYDVLV---NVAITPERQKKYD---FS-------IPYIAHRVLLVVRSDQQDIRSFKDLTDKTVA- 153 (274)
Q Consensus 88 ~~~~~~~~~~l~~g~~D~~~---~~~~t~eR~~~~~---fs-------~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~- 153 (274)
..+-..++..+++|++|++. +-.++.-+.++-. .. .|-.....+.++|+++. + +++||+|++-+
T Consensus 34 ~~s~~~C~~~I~~~~AD~~~ldgg~vy~Ag~~~y~L~Pi~~E~y~~~~~~~~~Y~aVAVVkk~s~-~-~~~~LrGkkSCH 111 (328)
T pfam00405 34 KSSYLECIQAIAENEADAITLDGGLVYEAGLAPYKLKPVAAEVYGSKEEPQTHYYAVAVVKKGSN-F-QLNQLQGKKSCH 111 (328)
T ss_pred CCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCC-C-CHHHCCCCCCCC
T ss_conf 89999999999769998898686999986446589866897512577889854899999976887-6-675617986313
Q ss_pred ----EECCCHHH-HHHHC------------------------CCC-----------------------CCEEECCHHHHH
Q ss_conf ----31010122-33201------------------------345-----------------------421336855777
Q gi|254781112|r 154 ----QILGTDLS-RFAKE------------------------LKS-----------------------HLVFSHNFEQSL 181 (274)
Q Consensus 154 ----~~~g~~~~-~~l~~------------------------~~~-----------------------~~~~~~~~~~~~ 181 (274)
-..|+... .++.. ++. ....|..+.-++
T Consensus 112 tg~g~taGw~iPig~l~~~~~~~~~~~~~~~avs~FF~~SCvPGa~~~~~~~LC~lC~G~~~~~C~~~~~e~Y~Gy~GAf 191 (328)
T pfam00405 112 TGLGRSAGWNIPIGLLRPQLPWAIPREPLEKAVSKFFSASCVPGADEGAFPKLCQLCAGDGENKCACSNNEPYFGYSGAF 191 (328)
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 67787433011289873126757899858899998606246689899878524654789986767899877665740099
Q ss_pred HHHHHHHHHCCCCCHHHHHHH
Q ss_conf 755443210036655899999
Q gi|254781112|r 182 QLLLSKRTDATMIPDIPFFNF 202 (274)
Q Consensus 182 ~~l~~grvD~~~~~~~~~~~~ 202 (274)
+-|..|..|++++...++...
T Consensus 192 rCL~eg~GDVAFvkh~tV~en 212 (328)
T pfam00405 192 KCLKDGAGDVAFVKHSTVFEN 212 (328)
T ss_pred HHHHCCCCCEEEEECCCHHHH
T ss_conf 865318975698705436653
No 92
>pfam01379 Porphobil_deam Porphobilinogen deaminase, dipyromethane cofactor binding domain.
Probab=86.71 E-value=1.8 Score=22.65 Aligned_cols=138 Identities=19% Similarity=0.127 Sum_probs=68.6
Q ss_pred HHHHHHHCCCCCCCH-HCC--CCHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCHHHHHHHC
Q ss_conf 988643103221100-003--6756754200233--322222222211122221111123-3432023101012233201
Q gi|254781112|r 93 GLITGLDTNRYDVLV-NVA--ITPERQKKYDFSI--PYIAHRVLLVVRSDQQDIRSFKDL-TDKTVAQILGTDLSRFAKE 166 (274)
Q Consensus 93 ~~~~~l~~g~~D~~~-~~~--~t~eR~~~~~fs~--p~~~~~~~~~~~~~~~~~~~~~dL-~g~~V~~~~g~~~~~~l~~ 166 (274)
++.++|.+|++|++. ++- ++... +.+.... +--....+++.+. ..++++| +|.+||...-== ...++.
T Consensus 61 ele~aLl~~~iDiAVHS~KDlP~~~~-~~l~i~avl~R~d~rD~Li~~~----~~~l~~lp~ga~IGTSS~RR-~aql~~ 134 (213)
T pfam01379 61 ELEEALLNGEIDLAVHSLKDVPTELP-EGLVLGAIPKREDPRDALVSRN----GKSLEDLPEGSVVGTSSLRR-SAQLKR 134 (213)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCC-CCCEEEEEECCCCHHHHHHCCC----CCCHHHCCCCCEEECCCHHH-HHHHHH
T ss_conf 99999970987878760465776479-8746876644788666443026----76665677676553253779-999998
Q ss_pred --CCCCCEEE-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-----CCCCCCCCEEEEEECCCHHHHH
Q ss_conf --34542133-685577775544321003665589999998458766732623-----6776877079998189989999
Q gi|254781112|r 167 --LKSHLVFS-HNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA-----DRMKDNSAVAFMMRKGNNKLTR 238 (274)
Q Consensus 167 --~~~~~~~~-~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~k~~~~L~~ 238 (274)
+..+++.. .|.+..++.|.+|++|+.+....-. .+........... .+...+..+++-.+++|.++.+
T Consensus 135 ~~pdl~~~~iRGNV~TRl~KL~~g~~DaiiLA~Agl----~RL~l~~~i~~~l~~~~~~PA~gQGaIaie~r~~d~~i~~ 210 (213)
T pfam01379 135 KRPDLKFEPLRGNVDTRLRKLDEGEYDAIILAAAGL----KRLGLEDRITQSLPPEDMLPAVGQGALAIECRKGDEEILA 210 (213)
T ss_pred HCCCCCEEECCCCHHHHHHHHHCCCCCEEEEHHHHH----HHCCCCCCCCEECCHHHCCCHHHHHHEEEEEECCCHHHHH
T ss_conf 689984677668889999997578987986367678----6668731140671877648837430369988169899999
Q ss_pred HH
Q ss_conf 99
Q gi|254781112|r 239 SI 240 (274)
Q Consensus 239 ~i 240 (274)
.+
T Consensus 211 ll 212 (213)
T pfam01379 211 LL 212 (213)
T ss_pred HH
T ss_conf 74
No 93
>PRK00072 hemC porphobilinogen deaminase; Reviewed
Probab=86.25 E-value=2.6 Score=21.64 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=77.7
Q ss_pred HHHHHHHCCCCCCCH-HCC--CCHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCHHHH---H
Q ss_conf 988643103221100-003--675675420023--3322222222211122221111123-343202310101223---3
Q gi|254781112|r 93 GLITGLDTNRYDVLV-NVA--ITPERQKKYDFS--IPYIAHRVLLVVRSDQQDIRSFKDL-TDKTVAQILGTDLSR---F 163 (274)
Q Consensus 93 ~~~~~l~~g~~D~~~-~~~--~t~eR~~~~~fs--~p~~~~~~~~~~~~~~~~~~~~~dL-~g~~V~~~~g~~~~~---~ 163 (274)
++..+|.+|++|++. ++- ++.. .+.+... .+--....+++.++ ..++++| +|.+||. ..-+ .
T Consensus 64 ele~aLl~g~iDiAVHSlKDlPt~~-~~~l~i~avl~R~d~rDvLv~~~----~~~l~~Lp~ga~IGT----SS~RR~aq 134 (300)
T PRK00072 64 ELEEALLDGEIDIAVHSLKDVPTEL-PEGLVLAAIPEREDPRDAFVSND----YASLDDLPEGAVVGT----SSLRRQAQ 134 (300)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCC-CCCCEEEEEECCCCHHHHHHCCC----CCCCCCCCCCCEEEC----CCHHHHHH
T ss_conf 9999998287552554134578758-98855876554788678530146----675133899988850----46508999
Q ss_pred HHC--CCCCCEEE-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-----CCCCCCCCCEEEEEECCCHH
Q ss_conf 201--34542133-68557777554432100366558999999845876673262-----36776877079998189989
Q gi|254781112|r 164 AKE--LKSHLVFS-HNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKI-----ADRMKDNSAVAFMMRKGNNK 235 (274)
Q Consensus 164 l~~--~~~~~~~~-~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~k~~~~ 235 (274)
++. +..+++.. .|.+..++.|.+|++|+.+.... .+.+.......... ..+...+..+++-.++++.+
T Consensus 135 l~~~~pdl~~~~iRGNv~TRl~Kl~~g~~DaiiLA~A----gl~RL~l~~~i~~~l~~~~~~PA~gQGaiave~r~~d~~ 210 (300)
T PRK00072 135 LLALRPDLEIKDLRGNVDTRLRKLDEGEYDAIILAAA----GLKRLGLEDRITELLDPDEMLPAVGQGALGIECRADDEE 210 (300)
T ss_pred HHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEHHHH----HHHHCCCCCCEEEEECHHHCCCCCCCCEEEEEEECCCHH
T ss_conf 9986799956776688899999975678645420676----786657854216985533357854630389999449988
Q ss_pred H---HHHHHHHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 9---99999999999979859999987678887
Q gi|254781112|r 236 L---TRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274)
Q Consensus 236 L---~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274)
+ ...+|..-..... ..|+-+-+-++-+-
T Consensus 211 ~~~~l~~in~~~t~~~~--~aER~~L~~L~ggC 241 (300)
T PRK00072 211 ILELLAPLNHAETRLCV--TAERAFLRALEGGC 241 (300)
T ss_pred HHHHHHHHCCHHHHHHH--HHHHHHHHHCCCCC
T ss_conf 88776650898899999--99999998639999
No 94
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=85.97 E-value=1.4 Score=23.36 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=75.6
Q ss_pred HHHHHHHHHCCCCCC-CHHCCCCHHHH---HHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEECCCHHHHH
Q ss_conf 889886431032211-00003675675---42002--33322222222211122221111123343-2023101012233
Q gi|254781112|r 91 VSGLITGLDTNRYDV-LVNVAITPERQ---KKYDF--SIPYIAHRVLLVVRSDQQDIRSFKDLTDK-TVAQILGTDLSRF 163 (274)
Q Consensus 91 ~~~~~~~l~~g~~D~-~~~~~~t~eR~---~~~~f--s~p~~~~~~~~~~~~~~~~~~~~~dL~g~-~V~~~~g~~~~~~ 163 (274)
...+-..+..|.+|+ +.|--.-.|+. ..+.. -.+|-....++-++.+. .+++.+|+.|+ ||+.-.-....+|
T Consensus 52 ~~DIP~yV~~G~~DlGItG~D~l~E~~~~~~~v~~l~dL~fG~crl~vAvp~~~-~~~~~~~l~~~~rIATkYp~l~~~y 130 (290)
T COG0040 52 AQDIPTYVEDGVADLGITGEDVLRESGLDDASVEELLDLGFGGCRLVVAVPEES-DYTSPEDLKGRLRIATKYPNLARKY 130 (290)
T ss_pred HHHHHHHHHCCCEEEEEECHHHHHHCCCCCCCCEEHCCCCCCCEEEEEEECCCC-CCCCHHHHCCCCEEEECCHHHHHHH
T ss_conf 688448985685004132113133314676571001017877579999955776-7568457268846887368999999
Q ss_pred HHCCCCC--CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEE-CC-CHHHHHH
Q ss_conf 2013454--213368557777554432100366558999999845876673262367768770799981-89-9899999
Q gi|254781112|r 164 AKELKSH--LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMR-KG-NNKLTRS 239 (274)
Q Consensus 164 l~~~~~~--~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~-~~~L~~~ 239 (274)
.++.+.+ ++......+. +-..|-.|++ +|-.+.-..++.+.. ..+ ....... -++..+ +. ..+-.+.
T Consensus 131 f~~~g~~~~Ii~l~GsvE~--aP~~GlADaI-vDivsTG~TLkaNgL----~~i-d~i~~ss-a~LI~n~~~~~~~k~~~ 201 (290)
T COG0040 131 FAEKGIDVEIIKLSGSVEL--APALGLADAI-VDIVSTGTTLKANGL----KEI-EVIYDSS-ARLIVNAKASLKDKQEL 201 (290)
T ss_pred HHHCCCEEEEEECCCCEEE--CCCCCCCCEE-EEEECCCHHHHHCCC----EEE-EEEEEEE-EEEEECCCCCCCHHHHH
T ss_conf 9975966999975572763--0156853168-885067775897799----887-8898547-89996164232105799
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999997
Q gi|254781112|r 240 INEILCAIHL 249 (274)
Q Consensus 240 in~~l~~l~~ 249 (274)
+++-+.+++.
T Consensus 202 i~~l~~rl~g 211 (290)
T COG0040 202 IDQLVTRLKG 211 (290)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 95
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=85.60 E-value=2.8 Score=21.44 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCC--CCCEEEEC----C---CHH-H--HHH-HCCC--------------CCCEE
Q ss_conf 333222222222111222-211111233--43202310----1---012-2--332-0134--------------54213
Q gi|254781112|r 122 SIPYIAHRVLLVVRSDQQ-DIRSFKDLT--DKTVAQIL----G---TDL-S--RFA-KELK--------------SHLVF 173 (274)
Q Consensus 122 s~p~~~~~~~~~~~~~~~-~~~~~~dL~--g~~V~~~~----g---~~~-~--~~l-~~~~--------------~~~~~ 173 (274)
|.||.. ..+|++|++++ .|++|+||. |-.|.... | +++ . .+. +..+ .++..
T Consensus 115 s~pytS-tivFlVRkGNPK~IkdW~DL~k~gV~VItPNPKTSGgaRwnyLAAwg~a~~~~gg~e~~a~~fv~~l~~NVpV 193 (338)
T PRK10852 115 SSPFYS-TMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARYTYLAAWGAADKADGGDKAKTEQFMTQFLKNVEV 193 (338)
T ss_pred CCCEEE-EEEEEEECCCCCCCCCHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 964466-7999980799566877577464897897579988840769999999999986499989999999999836851
Q ss_pred EC-CHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC-CCCCCCCEEEEE----ECCCHHHHHHHHHHHHH
Q ss_conf 36-855777755-443210036655899999984587667326236-776877079998----18998999999999999
Q gi|254781112|r 174 SH-NFEQSLQLL-LSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD-RMKDNSAVAFMM----RKGNNKLTRSINEILCA 246 (274)
Q Consensus 174 ~~-~~~~~~~~l-~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~k~~~~L~~~in~~l~~ 246 (274)
.+ +-..+...+ ..|..|+.+.-+..+....++...+...+.++. ......+.++.= +++..+..+. .-+
T Consensus 194 ld~gaR~AT~tF~~rg~GDVLl~~ENEa~l~~~~~g~~~~eiV~Ps~sIlae~pVAvVDk~vdk~GTr~vA~A----yL~ 269 (338)
T PRK10852 194 FDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKA----YLN 269 (338)
T ss_pred CCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCEEECCCCCEEECCCEEEEEECCCCCCCHHHHHH----HHH
T ss_conf 5897167889998738675675216789999996089971498899756606974898601234588999999----999
Q ss_pred HHHCCHHHHHHHHHC
Q ss_conf 997985999998767
Q gi|254781112|r 247 IHLDGTYKKIFDRYF 261 (274)
Q Consensus 247 l~~~G~~~~I~~kw~ 261 (274)
.--|.+-++|..|.+
T Consensus 270 yLyS~eaQ~i~Ak~~ 284 (338)
T PRK10852 270 WLYSPQAQTIITDYY 284 (338)
T ss_pred HHCCHHHHHHHHHHC
T ss_conf 865989999999808
No 96
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=85.54 E-value=0.84 Score=24.65 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=77.1
Q ss_pred CCCCCCHHHHHHHHHCCCCCC-CHHCCCCHHHHHHHC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHH
Q ss_conf 556689889886431032211-000036756754200--23332222222221112222111112334320231010122
Q gi|254781112|r 85 EFFETAVSGLITGLDTNRYDV-LVNVAITPERQKKYD--FSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLS 161 (274)
Q Consensus 85 ~~~~~~~~~~~~~l~~g~~D~-~~~~~~t~eR~~~~~--fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~ 161 (274)
++..+....+-..+..|.+|+ +.|.-+-.|....+. ....|.....++-++.+ ....++..++||+.-.-....
T Consensus 48 ~~~~~r~~DIp~~V~~G~~DlGI~G~D~l~E~~~~v~~l~dL~fG~c~l~vA~p~~---~~~~~~~~~~rIATkYp~it~ 124 (212)
T PRK01686 48 RFLLVRATDVPTYVEHGAADLGIVGKDVLMEHGKDLYEPLDLGIGKCRLSVAVPPG---ASAPDLGARLRVATKYPNIAR 124 (212)
T ss_pred EEEEECHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCEEEECCCCCEEEEEEEECCC---CCCCCCCCCCEEEEEHHHHHH
T ss_conf 99998768889999779976886158877525899169962686118999995277---775200489899986288899
Q ss_pred HHHHCCCCCC--EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHH-HH
Q ss_conf 3320134542--13368557777554432100366558999999845876673262367768770799981899899-99
Q gi|254781112|r 162 RFAKELKSHL--VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKL-TR 238 (274)
Q Consensus 162 ~~l~~~~~~~--~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L-~~ 238 (274)
+|..+.+.++ +......+ -+-..|-.|+++ |-...-..++.+.. .+..... ...-.+..++..-.. .+
T Consensus 125 ~yf~~~gi~~~iv~l~GavE--~aP~~G~AD~Iv-Div~TG~TLk~NgL-----~~i~~Il-~s~A~LI~n~~s~~~k~~ 195 (212)
T PRK01686 125 EYFAEKGVQVEIIKLYGSVE--LAPLVGLADAIV-DLVSTGNTLRANGL-----VEVEEIM-DISARLIVNKASLKLKRD 195 (212)
T ss_pred HHHHHCCCCEEEEECCCCCC--CCCCCCCCCEEE-EEECCHHHHHHCCC-----EEEEEEE-EEEEEEEECHHHHHHHHH
T ss_conf 99997399614895415223--567788423899-98477688998799-----9805888-878999996899887699
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254781112|r 239 SINEILCAIH 248 (274)
Q Consensus 239 ~in~~l~~l~ 248 (274)
.|+..+..++
T Consensus 196 ~I~~li~~l~ 205 (212)
T PRK01686 196 EIQPLIEKLR 205 (212)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 97
>pfam01634 HisG ATP phosphoribosyltransferase.
Probab=84.94 E-value=1.3 Score=23.43 Aligned_cols=146 Identities=12% Similarity=0.150 Sum_probs=76.6
Q ss_pred HHHHHHHCCCCCC-CHHCCCCHHHH-HHH-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCHHHHHHHCC
Q ss_conf 9886431032211-00003675675-420-02-333222222222111222211111233-4320231010122332013
Q gi|254781112|r 93 GLITGLDTNRYDV-LVNVAITPERQ-KKY-DF-SIPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTDLSRFAKEL 167 (274)
Q Consensus 93 ~~~~~l~~g~~D~-~~~~~~t~eR~-~~~-~f-s~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~~~~~l~~~ 167 (274)
.+-..+..|.+|+ +.|.-+-.|.. +.+ .. ..+|.....++.++++ ..+.+.+|+. ++||+.-.-....+|+.+.
T Consensus 5 DIp~yV~~G~~DlGI~G~D~l~E~~~~~v~~l~dL~fG~crl~vA~p~~-~~~~~~~dl~~~~rIATkYp~it~~~~~~~ 83 (161)
T pfam01634 5 DIPVFVEDGVVDLGITGEDLVREEELADVEELLDLDFGSCKLVVAVPES-GPYRSPEDLAGGKRIATKYPNLARKYFRKN 83 (161)
T ss_pred HHHHHHHCCCCCEEEEEHHHHHCCCCCCEEEEECCCCCCEEEEEEEECC-CCCCCHHHHCCCCEEEEECHHHHHHHHHHC
T ss_conf 8999982899768986722221479787688742687768999996277-775897795479799996539999999981
Q ss_pred CCC--CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCH-HHHHHHHHHH
Q ss_conf 454--2133685577775544321003665589999998458766732623677687707999818998-9999999999
Q gi|254781112|r 168 KSH--LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNN-KLTRSINEIL 244 (274)
Q Consensus 168 ~~~--~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~L~~~in~~l 244 (274)
+.+ ++......++ +-..|-.|+++ |-...-..++.+... +...... ..-.+..++... .-.+.+++.+
T Consensus 84 gi~~~ii~l~GavE~--aP~~g~AD~Iv-Div~TG~TLk~NgL~-----~i~~I~~-ssA~LI~n~~s~~~k~~~i~~l~ 154 (161)
T pfam01634 84 GIDAEIIKLDGSVEA--APALGIADAIV-DLVSTGETLRANGLK-----EIETIMD-SSAVLIANKNSLEEKEQVIDELV 154 (161)
T ss_pred CCEEEEEECCCCCCC--CCCCCCCCEEE-EEECCHHHHHHCCCE-----EEEEEEE-EEEEEEECCHHHHHHHHHHHHHH
T ss_conf 982689975573344--66667666899-997888999988999-----9179999-89999997246677799999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781112|r 245 CAIH 248 (274)
Q Consensus 245 ~~l~ 248 (274)
..|+
T Consensus 155 ~~l~ 158 (161)
T pfam01634 155 TRLQ 158 (161)
T ss_pred HHHH
T ss_conf 9998
No 98
>PRK10752 sulfate transporter subunit; Provisional
Probab=84.51 E-value=3.1 Score=21.13 Aligned_cols=182 Identities=14% Similarity=0.150 Sum_probs=83.7
Q ss_pred EEHHHHHHHCCCCCCCCCC---CH--HH-HHHHHHCCCCCCCH-HCCCCHHHH-----------HH-HCCCCCCCCCCCC
Q ss_conf 2167899762998555668---98--89-88643103221100-003675675-----------42-0023332222222
Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFET---AV--SG-LITGLDTNRYDVLV-NVAITPERQ-----------KK-YDFSIPYIAHRVL 131 (274)
Q Consensus 71 dl~~~i~~~lg~~~~~~~~---~~--~~-~~~~l~~g~~D~~~-~~~~t~eR~-----------~~-~~fs~p~~~~~~~ 131 (274)
...+...++.|-++++... +- .| .+++| +.|++. +....-++- +. -.=|.||. +..+
T Consensus 42 ~F~~~wk~~tG~~V~i~qShGGSg~QARaVi~Gl---~ADVVtlal~~Did~l~~~GlI~~dW~~~~P~ns~pyt-Stiv 117 (329)
T PRK10752 42 AFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGI---EADVVTLALAYDVDAIAERGRIDKNWIKRLPDNSAPYT-STIV 117 (329)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCC---CCCEEEECCHHHHHHHHHCCCCCCCHHHHCCCCCCCEE-EEEE
T ss_conf 9999998832990389855787627899984787---56778751421368998679999145654889996522-3799
Q ss_pred CCCCCCCC-CCCCCCCCCC--CCEEEEC----CC---HH----HHHHHCCC--------------CCCEEEC-CHHHHHH
Q ss_conf 22111222-2111112334--3202310----10---12----23320134--------------5421336-8557777
Q gi|254781112|r 132 LVVRSDQQ-DIRSFKDLTD--KTVAQIL----GT---DL----SRFAKELK--------------SHLVFSH-NFEQSLQ 182 (274)
Q Consensus 132 ~~~~~~~~-~~~~~~dL~g--~~V~~~~----g~---~~----~~~l~~~~--------------~~~~~~~-~~~~~~~ 182 (274)
|++|++++ .|++|+||.. -.|.... |. ++ ...+++.+ .++...+ +-..+..
T Consensus 118 flVRkGNPK~IkdW~DL~k~gV~VItPNPKTSG~aRwn~LAawg~a~~~~gg~e~~a~~fv~~l~~NV~vld~gaR~AT~ 197 (329)
T PRK10752 118 FLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVKALYKNVEVLDSGARGSTN 197 (329)
T ss_pred EEECCCCCCCCCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 99718995668774674648978976899887317799999999999724999999999999998368525897346778
Q ss_pred HH-HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCC-CCCCCCEEEEEE-----CCCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 55-4432100366558999999845876673262367-768770799981-----8998999999999999997985999
Q gi|254781112|r 183 LL-LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADR-MKDNSAVAFMMR-----KGNNKLTRSINEILCAIHLDGTYKK 255 (274)
Q Consensus 183 ~l-~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----k~~~~L~~~in~~l~~l~~~G~~~~ 255 (274)
.+ ..|..|+.+.-+..+....++...+...+.++.. .....+.++ +. ++..+..+. .-+.--+.+-++
T Consensus 198 tF~~rg~GDVLlt~ENEa~l~~~~~g~~~~eiV~P~~silae~pVAv-Vd~~vdk~GTr~~A~a----yl~fLys~eaQ~ 272 (329)
T PRK10752 198 TFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSV-VDKVVEKKGTREVAEA----YLKYLYSPEGQE 272 (329)
T ss_pred HHHHCCCCCEEEEHHHHHHHHHHHCCCCCCEEECCCCCEECCCCEEE-EECCCCCCCCHHHHHH----HHHHHCCHHHHH
T ss_conf 99864867557634379999998608998628789963551597599-8344566688999999----999865979999
Q ss_pred HHHHHC
Q ss_conf 998767
Q gi|254781112|r 256 IFDRYF 261 (274)
Q Consensus 256 I~~kw~ 261 (274)
|..|.+
T Consensus 273 i~Ak~~ 278 (329)
T PRK10752 273 IAAKNY 278 (329)
T ss_pred HHHHHC
T ss_conf 999808
No 99
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses.
Probab=83.92 E-value=3.3 Score=20.97 Aligned_cols=159 Identities=21% Similarity=0.198 Sum_probs=78.8
Q ss_pred HHHHHHHHCCCCCCCH-HCC--CCHHHHHHHCCC-C-CCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCHHHH---
Q ss_conf 8988643103221100-003--675675420023-3-322222222211122221111123-343202310101223---
Q gi|254781112|r 92 SGLITGLDTNRYDVLV-NVA--ITPERQKKYDFS-I-PYIAHRVLLVVRSDQQDIRSFKDL-TDKTVAQILGTDLSR--- 162 (274)
Q Consensus 92 ~~~~~~l~~g~~D~~~-~~~--~t~eR~~~~~fs-~-p~~~~~~~~~~~~~~~~~~~~~dL-~g~~V~~~~g~~~~~--- 162 (274)
.++..+|.+|++|++. ++- ++.. .+.+... . +--....+++.+++ .++++| +|.+||. ..-+
T Consensus 59 kele~aLl~g~iDiAVHSlKDlPt~~-~~gl~i~avl~R~dprDvlv~~~~----~~l~~lp~ga~IGT----SS~RR~a 129 (292)
T cd00494 59 KELEEALLNGEIDLAVHSLKDVPTEL-PEGLVLGAIPKREDPRDALVSRNG----SSLEDLPAGSVVGT----SSLRRQA 129 (292)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCC-CCCCEEEEEECCCCCCCHHHCCCC----HHHHCCCCCCEEEE----CCCCHHH
T ss_conf 99999997098787986046577747-987468766347882224440640----02212898987851----4743799
Q ss_pred HHHC--CCCCCEEE-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEE-----ECCCCCCCCCEEEEEECCCH
Q ss_conf 3201--34542133-6855777755443210036655899999984587667326-----23677687707999818998
Q gi|254781112|r 163 FAKE--LKSHLVFS-HNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFK-----IADRMKDNSAVAFMMRKGNN 234 (274)
Q Consensus 163 ~l~~--~~~~~~~~-~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~k~~~ 234 (274)
.++. +..+++.. .|.+..++.|.+|++|+.+....- +.+......... ...+...+..+++-.++++.
T Consensus 130 ql~~~~pdl~i~~iRGNV~TRl~KL~~g~~DaiILA~AG----L~RLgl~~~i~~~l~~~~~~PA~gQGaiave~r~~d~ 205 (292)
T cd00494 130 QLKRKRPDLKFEPLRGNVDTRLRKLDEGEYDAIILAAAG----LKRLGLEDRITQYLSPEVMLPAVGQGALAIECRKGDE 205 (292)
T ss_pred HHHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEEHHHH----HHHCCCCCCCCCCCCHHCCCCCCCCCEEEEEEECCCH
T ss_conf 999868999546765889999998516787477544656----7554784202300363107887665306888724898
Q ss_pred H---HHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 9---999999999999979859999987678887
Q gi|254781112|r 235 K---LTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274)
Q Consensus 235 ~---L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274)
+ +...+|..-..... +.|+-+-+-+|-+-
T Consensus 206 ~~~~~l~~in~~~t~~~~--~aER~~l~~l~ggC 237 (292)
T cd00494 206 ELLALLKPLNHEETALCV--LAERAFLRELEGGC 237 (292)
T ss_pred HHHHHHHHHCCHHHHHHH--HHHHHHHHHHCCCC
T ss_conf 888888775587889999--99999999848999
No 100
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=82.16 E-value=1.1 Score=23.82 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=52.6
Q ss_pred HHHHHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCH-H-HHHHHHHCCCC-C
Q ss_conf 9984178878858958999628998724870469984889885216789976299855566898-8-98864310322-1
Q gi|254781112|r 28 YYFVIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAV-S-GLITGLDTNRY-D 104 (274)
Q Consensus 28 ~~~~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~-~-~~~~~l~~g~~-D 104 (274)
..+.+....+.+.++|+|=++.+ .+. .+ ..++++..-+..|++|+++..+. . .+..++..|+. |
T Consensus 16 ~~~~~~~~~~~~~~~ltvW~~~~-----------~~~-~~-l~~~~~~Fe~~~gi~V~v~~~~~~~~kl~~a~~~G~~PD 82 (394)
T PRK09474 16 LMLSASALAKIEEGKLVIWINGD-----------KGY-NG-LAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPD 82 (394)
T ss_pred HHHHCCCCCCCCCCEEEEEECCC-----------HHH-HH-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCC
T ss_conf 99736432456678699995797-----------056-99-999999974540977999710268999997420799995
Q ss_pred CCH----------------HCCCCHHH-HHH------------HCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC
Q ss_conf 100----------------00367567-542------------00233322222222211122--2211111233
Q gi|254781112|r 105 VLV----------------NVAITPER-QKK------------YDFSIPYIAHRVLLVVRSDQ--QDIRSFKDLT 148 (274)
Q Consensus 105 ~~~----------------~~~~t~eR-~~~------------~~fs~p~~~~~~~~~~~~~~--~~~~~~~dL~ 148 (274)
++. .+..+.+- ... -.|.-|+...+.+++.+++- ...++++||.
T Consensus 83 v~~~~~~~~~~~a~~G~l~pl~~~~~~~~~~~~~~~~a~tydGk~YgvP~~~~t~~L~YNKdl~~~pP~TwdEl~ 157 (394)
T PRK09474 83 IIFWAHDRFGGYAQSGLLAEVTPSKAFQDKLVPFTWDAVRYNGKLIGYPIAVEALSLIYNKDLVPNPPKTWEEIP 157 (394)
T ss_pred EEEECCHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHCEEECCEEEEECCCCCCEEEEEEHHHCCCCCCCHHHHH
T ss_conf 899884769999978986638856444530463345246889888886301223068874000368999999999
No 101
>COG2107 Predicted periplasmic solute-binding protein [General function prediction only]
Probab=81.90 E-value=1.2 Score=23.78 Aligned_cols=100 Identities=15% Similarity=0.121 Sum_probs=51.0
Q ss_pred CCCCCCCEEEECCCHHHHHHHC--CCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-CCCCC---CCEEECCC
Q ss_conf 1233432023101012233201--345421336855777755443210036655899999984-58766---73262367
Q gi|254781112|r 145 KDLTDKTVAQILGTDLSRFAKE--LKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLER-RPHDG---NLFKIADR 218 (274)
Q Consensus 145 ~dL~g~~V~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~ 218 (274)
.||+++||++.--.+-...+-+ .+...+.+-..++...++.+|+||+-+.=...-..|.+. ..... ..+.-.
T Consensus 91 ~~l~~~rvavpG~~TTA~lL~rl~~p~~~~V~m~fdeI~~Avl~G~VDaGvlIHE~~~ty~~~gL~~v~Dl~d~W~~~-- 168 (272)
T COG2107 91 KDLKGKRVAVPGEMTTAALLFRLAYPKAEIVYMPFDEIIPAVLEGKVDAGVLIHEEQLTYALYGLKKVLDLGDWWKEK-- 168 (272)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCCEEEEEHHCCHHHHCCEEEEEHHHHHHHH--
T ss_conf 655666575678531899999986787369971288878999728876535876010131030815763488999874--
Q ss_pred CCCCCCEE-EEEECC-CHHHHHHHHHHHHH
Q ss_conf 76877079-998189-98999999999999
Q gi|254781112|r 219 MKDNSAVA-FMMRKG-NNKLTRSINEILCA 246 (274)
Q Consensus 219 ~~~~~~~~-~~~~k~-~~~L~~~in~~l~~ 246 (274)
..-+.|+| ++++|+ ..+....|..++.+
T Consensus 169 ~~LPlPLG~~~irk~l~~~~a~~~~~al~~ 198 (272)
T COG2107 169 TGLPLPLGCIAIRKDLPKDTAEAIKDALRK 198 (272)
T ss_pred CCCCCCCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 299867513341101899999999999999
No 102
>PRK11482 putative DNA-binding transcriptional regulator; Provisional
Probab=80.24 E-value=4.5 Score=20.14 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=79.2
Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCC
Q ss_conf 216789976299855566898898864310322110000367567542002333222222222111222211---11123
Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIR---SFKDL 147 (274)
Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~---~~~dL 147 (274)
.++..+.+... ++.+...+.....+.|..|++|++.+...... . -..+.+++....+++++++++... +++++
T Consensus 83 ~l~~~l~~~aP-~i~l~~~~~~~~~~~L~~~~~Dl~i~~~~~~~--~-~~~~~~L~~d~~v~v~~~~HP~~~~~~t~e~~ 158 (266)
T PRK11482 83 VIYQAIKPHYP-QLLLRNIPISDAENQLSQFQTDLIIDTHSCTN--R-TIQHHVLFTDNMVLVCRQGHPCLSLEDDEETL 158 (266)
T ss_pred HHHHHHHHHCC-CEEEEECCCCCHHHHHHCCCCCEEEECCCCCC--C-CEEEEEEEECCEEEEEECCCCCCCCCCCHHHH
T ss_conf 99999997799-86999568657889985699888985688898--7-63899999428899998968556999999999
Q ss_pred CCCCEE-E-ECC---CHHHHHHHCCCCC--C-EEECCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 343202-3-101---0122332013454--2-1336855777755443210036-6558999999845876673262367
Q gi|254781112|r 148 TDKTVA-Q-ILG---TDLSRFAKELKSH--L-VFSHNFEQSLQLLLSKRTDATM-IPDIPFFNFLERRPHDGNLFKIADR 218 (274)
Q Consensus 148 ~g~~V~-~-~~g---~~~~~~l~~~~~~--~-~~~~~~~~~~~~l~~grvD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (274)
....-. + ..| +..+..+++.+.+ + ....+...+...+.+ .|++. ++...+..+....+. .....+
T Consensus 159 ~~~~Hv~~~~~~~~~~~~~~~l~~~~~~R~i~~~~~~~~~~~~lv~~--tdli~~~P~~la~~~~~~~~L----~~lp~p 232 (266)
T PRK11482 159 DNAAHTLLLPEGQNFSGLRQRLQEMFPDRQISFSSYNILTIAALIAS--SDMLGLMPSRFYNLFSRCWPL----EKLPFP 232 (266)
T ss_pred HCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH--CCEEEEHHHHHHHHHHHHCCC----EEECCC
T ss_conf 62999999769998779999999749998599997999999999984--999985899999998876798----794689
Q ss_pred C--CCCCCEEEEEECC
Q ss_conf 7--6877079998189
Q gi|254781112|r 219 M--KDNSAVAFMMRKG 232 (274)
Q Consensus 219 ~--~~~~~~~~~~~k~ 232 (274)
+ .....+++.-+|.
T Consensus 233 p~~~~~~~~~l~Wh~r 248 (266)
T PRK11482 233 SLNEEQIDFSLHYNKL 248 (266)
T ss_pred CCCCCCEEEEEEECCC
T ss_conf 9889964699998855
No 103
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=79.03 E-value=4.9 Score=19.90 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=49.3
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCH-----HHHHHHCCCCCCEEECCHHHHHHHHHHHH-H
Q ss_conf 54200233322222222211122221111123343202310101-----22332013454213368557777554432-1
Q gi|254781112|r 116 QKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTD-----LSRFAKELKSHLVFSHNFEQSLQLLLSKR-T 189 (274)
Q Consensus 116 ~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~-----~~~~l~~~~~~~~~~~~~~~~~~~l~~gr-v 189 (274)
-..|.|+-|+-.... ...........+.|.+|-++.+.. ...+++..+.++....|-.+++..+..++ +
T Consensus 653 GS~F~~~LPl~~~~~-----~~~~~~~~~~~~~~lrVLvVEDn~~N~~v~~~~L~~lG~~v~~A~nG~eAle~l~~~~~f 727 (912)
T PRK11466 653 GSCFCLRLPLRHATA-----PVPKTVNQAVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPF 727 (912)
T ss_pred CEEEEEEEECCCCCC-----CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC
T ss_conf 728999997778887-----876433466577888699994878899999999998699899989999999999718998
Q ss_pred HCCCCCH
Q ss_conf 0036655
Q gi|254781112|r 190 DATMIPD 196 (274)
Q Consensus 190 D~~~~~~ 196 (274)
|.+++|-
T Consensus 728 DlVLmDi 734 (912)
T PRK11466 728 AAALVDF 734 (912)
T ss_pred CEEEECC
T ss_conf 5898769
No 104
>PRK10837 putative DNA-binding transcriptional regulator; Provisional
Probab=78.38 E-value=5.1 Score=19.78 Aligned_cols=174 Identities=11% Similarity=0.054 Sum_probs=96.8
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
.+++|+||+...... .+..+++....++. ++++++...+..++++.+.+|++|+...... ....
T Consensus 87 ~~g~l~i~~~~~~~~-------------~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~~~~D~~i~~~~--~~~~ 151 (291)
T PRK10837 87 DNGAIRIYASSTIGN-------------YILPAMIARYRHDYPQLPLELSVGNSQDVIQAVLDFRVDIGLIEGP--CHST 151 (291)
T ss_pred CCCEEEEEEEHHHHH-------------HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCC--CCCC
T ss_conf 886299996179999-------------9999999999964899359999888899999998088416674178--8998
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCEEE-ECCCHH----HHHHHCCCC--C-CEEECCHHHHHHHHHH
Q ss_conf 20023332222222221112222---11111233432023-101012----233201345--4-2133685577775544
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD---IRSFKDLTDKTVAQ-ILGTDL----SRFAKELKS--H-LVFSHNFEQSLQLLLS 186 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~---~~~~~dL~g~~V~~-~~g~~~----~~~l~~~~~--~-~~~~~~~~~~~~~l~~ 186 (274)
.+ -..|+.....++++..+.+. --+++||.+..... ..|+.. +.++...+. + ...+.+.+....++.+
T Consensus 152 ~l-~~~~l~~~~~~~v~~p~~~l~~~~i~~~~l~~~~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~ 230 (291)
T PRK10837 152 EI-ISEPWLEDELVVFAAPDSPLARGPVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPRFEMAMELGNSEAIKHAVRH 230 (291)
T ss_pred CE-EEEEEECCCEEEEECCCCHHHCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 71-89994414189998788665379999899807987994499868999999998548865301312979999999995
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCC
Q ss_conf 32100366558999999845876673262-367768770799981899
Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~ 233 (274)
|.. ..+.+...+...+..- ....+ .+.+....++++..+|+.
T Consensus 231 G~G-ia~lp~~~v~~~l~~g----~L~~l~~~~~~~~~~~~lv~~k~~ 273 (291)
T PRK10837 231 GLG-ISCLSRRVIADQLQAG----TLVEVAVPLPRLMRTLWRIHHRQK 273 (291)
T ss_pred CCC-EEECCHHHHHHHHHCC----CEEEEECCCCCCCCEEEEEEECCC
T ss_conf 991-8972499999998789----979970788886127999998978
No 105
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=77.86 E-value=3.7 Score=20.68 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=68.3
Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHHHHHHH----CCCCCCCHHCCCCHHHHHHHCC----------------------CCC
Q ss_conf 21678997629985556689889886431----0322110000367567542002----------------------333
Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGLITGLD----TNRYDVLVNVAITPERQKKYDF----------------------SIP 124 (274)
Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~~~~l~----~g~~D~~~~~~~t~eR~~~~~f----------------------s~p 124 (274)
+++.+.-++.|++|+++...-..++.-|+ +.++|++.+....-.|...-.. -.|
T Consensus 56 ~~~~aFek~tGikV~~v~~~sge~laRl~aEk~nPqaDVv~~~d~~~~~A~~~GLl~py~~~~~~~ip~~~k~~dg~~~~ 135 (367)
T TIGR03227 56 DQFDAFEKAEGIKVNIVEAGGGEVVERAAKEKGNPKADVIVTAPPFIQQAAAEGLLANFNSDAAKAIPAIAKAADGLWAP 135 (367)
T ss_pred HHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCHHHCCHHHHCCCCCEEE
T ss_conf 87688888669838999897799999999522799720999785799999978895627896645577766377983898
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCC----CCEEEEC----CCHHH----------------HHHHCCCCCCEE-ECCH
Q ss_conf 22222222211122--22111112334----3202310----10122----------------332013454213-3685
Q gi|254781112|r 125 YIAHRVLLVVRSDQ--QDIRSFKDLTD----KTVAQIL----GTDLS----------------RFAKELKSHLVF-SHNF 177 (274)
Q Consensus 125 ~~~~~~~~~~~~~~--~~~~~~~dL~g----~~V~~~~----g~~~~----------------~~l~~~~~~~~~-~~~~ 177 (274)
+.....++++.++. ...++++||-. -+|++.. ++.+. +++++...+.+. ..+.
T Consensus 136 ~~~~~~~~~yN~~~~k~~PkSW~DL~dP~ykgkI~~~dP~tS~~g~~~l~~~~~~~G~eD~a~~~~~~L~~N~~~~~~s~ 215 (367)
T TIGR03227 136 FVKNYFSFAINPKLLKSAPASFADLLDADFKGKLAYSNPAQAADGMAVIILAFALFGSEDAAFAYLAKLEANNKFHSAGT 215 (367)
T ss_pred EECCEEEEEEEHHHHCCCCCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEECCCC
T ss_conf 85557999998577057998899872853378289528776617999999999970985388999998874486724781
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 57777554432100366558999999845
Q gi|254781112|r 178 EQSLQLLLSKRTDATMIPDIPFFNFLERR 206 (274)
Q Consensus 178 ~~~~~~l~~grvD~~~~~~~~~~~~~~~~ 206 (274)
.....++.+|++.....+...........
T Consensus 216 ~~~~~~~~~GE~~va~g~~~~~~~~~~~~ 244 (367)
T TIGR03227 216 GKLNALLNKGEIAVANGDLQMDLADAEHG 244 (367)
T ss_pred HHHHHHHHCCCEEEEEEECCHHHHHHHHC
T ss_conf 79999985786789952020436777627
No 106
>PRK10216 DNA-binding transcriptional regulator YidZ; Provisional
Probab=75.86 E-value=6 Score=19.34 Aligned_cols=135 Identities=10% Similarity=0.086 Sum_probs=66.5
Q ss_pred EEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH-HC----C--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2167899762-99855566898898864310322110000367567542-00----2--333222222222111222211
Q gi|254781112|r 71 DLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK-YD----F--SIPYIAHRVLLVVRSDQQDIR 142 (274)
Q Consensus 71 dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~-~~----f--s~p~~~~~~~~~~~~~~~~~~ 142 (274)
.+++.+.+.. ++.+++.+.+.+. ++.|..|++|++.+......|... +. + ...++.+..+++++++++.++
T Consensus 83 ~l~~~i~~~AP~v~l~~~~~~~~~-~~~L~~g~iDl~i~~~~~~p~~~~~~~~~p~~~~~~~l~~d~~~v~~r~~HP~~~ 161 (288)
T PRK10216 83 ALSQQIYQRYPQATIKLRNWDYDS-LDAITRGEVDIGFTGRESHPRSRELLSLLPLAIDFEVLFSDLPCVWLRKDHPALH 161 (288)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCH-HHHHHCCCCCEEEECCCCCCCCHHHHHCCCCCCCEEEEEEEEEEEEECCCCCCCC
T ss_conf 999999976999779962489355-9999759976898356568630455512764343179996006999808994346
Q ss_pred ---CCCCCCCCC-EEEE-CC---CHHHHHHHCCCCC--C-EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf ---111233432-0231-01---0122332013454--2-13368557777554432100366558999999845
Q gi|254781112|r 143 ---SFKDLTDKT-VAQI-LG---TDLSRFAKELKSH--L-VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERR 206 (274)
Q Consensus 143 ---~~~dL~g~~-V~~~-~g---~~~~~~l~~~~~~--~-~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~ 206 (274)
+++++-..+ |.+. .| +..+..+.+.+.+ + ...++...+..++.....+.+......+..+..+.
T Consensus 162 ~~ltle~y~~~~Hv~v~~~~~~~~~~d~~L~~~g~~R~i~~~~~~f~~~~~~~~~~~~~li~t~p~~a~~~~~~~ 236 (288)
T PRK10216 162 EEWNLDTFLRYPHISICWEQSDTWALDDVLQELGRERTIALSLPGFEQSLFMAAQPDHLLLATAPRYCQHYNQLH 236 (288)
T ss_pred CCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCEEEECHHHHHHHHHHC
T ss_conf 898999997589869844888876279999973986517999498898899995689849981099999998764
No 107
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=69.03 E-value=8.7 Score=18.35 Aligned_cols=177 Identities=13% Similarity=0.146 Sum_probs=89.7
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
.++.++||+..+... .+..+++..+.++. ++++++...+...++..|.+|++|+...... + ...
T Consensus 87 ~~~~l~ig~~~~~~~-------------~~l~~~l~~~~~~~P~v~l~l~~~~~~~~~~~L~~~~~Dl~i~~~~-p-~~~ 151 (275)
T PRK03601 87 RHNEFSIGASASLWE-------------CMLNQWLGRLYQNQEELQFEARIAQRQSLVKQLHERQLDLLITTEA-P-KMD 151 (275)
T ss_pred CCCCEEEEEEHHHHH-------------HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCC-C-CCC
T ss_conf 776099997757789-------------9999999999997889679999889899999997799358997779-9-888
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHH----HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 20023332222222221112222111112334320231010122----33201345421336855777755443210036
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLS----RFAKELKSHLVFSHNFEQSLQLLLSKRTDATM 193 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~ 193 (274)
.+ -+.+.......+++......- +++. -+....|.... ..............+.+...+++..|..=+ +
T Consensus 152 ~l-~~~~l~~~~l~l~~s~~~~~~---~~~~--~i~l~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~v~~g~Gia-~ 224 (275)
T PRK03601 152 EF-SSQLLGHFTLALYTSAPSKNK---SELN--YLRLEWGPDFQQHEAGLIGADEVPILTTSSAELARQQLATLNGCA-W 224 (275)
T ss_pred CE-EEEEECCEEEEEEECCCCCCC---CCCC--EEEEECCCCHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCEE-E
T ss_conf 84-799952356899977864334---6887--588206720679997523567798588578999999999789099-9
Q ss_pred CCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 6558999999845876673262367768770799981899899999999999
Q gi|254781112|r 194 IPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILC 245 (274)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~ 245 (274)
.+... .+..+ ....+.+.+....+++.+-+|+++. ...|.+.|+
T Consensus 225 LP~~~----~~~~g---~L~~v~~~~~~~rp~y~v~~k~~~~-~~~ir~~l~ 268 (275)
T PRK03601 225 LPVHW----AKEKG---GLHTVVDSTTLSRPLYAIWLQNSDK-QALIRDLLK 268 (275)
T ss_pred CCHHH----HHHCC---CEEECCCCCCCCEEEEEEEECCCCC-HHHHHHHHH
T ss_conf 93788----71189---9899999997714799999688973-799999982
No 108
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism]
Probab=68.75 E-value=8.8 Score=18.32 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=74.6
Q ss_pred HHHHHHHCCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCEEEECCCHHHH---
Q ss_conf 988643103221100-00367567542002333222222222111222------21111123343202310101223---
Q gi|254781112|r 93 GLITGLDTNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQ------DIRSFKDLTDKTVAQILGTDLSR--- 162 (274)
Q Consensus 93 ~~~~~l~~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~------~~~~~~dL~g~~V~~~~g~~~~~--- 162 (274)
++...|.+|++|++. ++---| ..+..++ .-.++..|.+.. ...++++| .-|...||+.-+
T Consensus 63 Ele~all~g~~DiAVHSlKDvP-----~~~p~gL--~laai~~R~dprDalVs~~~~~l~~L---P~Ga~VGTSSlRR~a 132 (307)
T COG0181 63 ELEQALLEGEIDIAVHSLKDVP-----TELPEGL--VLAAIPEREDPRDALVSRDGYDLEEL---PEGAVVGTSSLRRQA 132 (307)
T ss_pred HHHHHHHCCCCCEEEEECCCCC-----CCCCCCC--EEEEECCCCCHHHEEEECCCCCHHHC---CCCCCCCCCHHHHHH
T ss_conf 9999997699778976044487-----5689993--69996178995366888788856348---998831452687999
Q ss_pred HHHC--CCCCCEEE-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-----CCCCCCCCCEEEEEECCCH
Q ss_conf 3201--34542133-68557777554432100366558999999845876673262-----3677687707999818998
Q gi|254781112|r 163 FAKE--LKSHLVFS-HNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKI-----ADRMKDNSAVAFMMRKGNN 234 (274)
Q Consensus 163 ~l~~--~~~~~~~~-~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~k~~~ 234 (274)
.++. +..++... .|.+..++.|.+|.+|+++... ..+++....+..... ..+...+..+++-.++++.
T Consensus 133 ql~~~rPdl~i~~lRGNVdTRL~KL~~g~yDAIILA~----AGL~RLgl~~~~~~~l~p~~~~PA~gQGal~ie~R~~d~ 208 (307)
T COG0181 133 QLKALRPDLKIEPLRGNVDTRLRKLDEGEYDAIILAA----AGLKRLGLENRITEILDPEEFLPAPGQGALAIECRAGDE 208 (307)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHCCCCCHHHHHH----HHHHHCCCCCCCEEECCHHHCCCCCCCCEEEEEEECCCH
T ss_conf 9998699976996657688899986167852999999----999862874222063475426898888669999963967
Q ss_pred H---HHHHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf 9---99999999999997985999998767888
Q gi|254781112|r 235 K---LTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274)
Q Consensus 235 ~---L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274)
+ +...+|..=..+.- .-++-+-+.++-.
T Consensus 209 ~~~~ll~~i~~~~t~~~v--~aERa~l~~L~gg 239 (307)
T COG0181 209 KVLELLAELNDEDTRICV--TAERAFLRELEGG 239 (307)
T ss_pred HHHHHHHHCCCCHHHHHH--HHHHHHHHHHCCC
T ss_conf 899999861582088999--9999999962899
No 109
>PRK10094 DNA-binding transcriptional activator AllS; Provisional
Probab=68.07 E-value=9.1 Score=18.23 Aligned_cols=183 Identities=13% Similarity=0.165 Sum_probs=92.1
Q ss_pred CCCEEEEECCC-CCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 89589996289-987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 40 QSALRVGTDGI-YPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 40 ~~~l~v~~~~~-~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
.+.+++++... +.|. +..+++..+.++. ++++++....+...++.+.++.+|+..++..++....
T Consensus 91 ~g~l~i~~~~~~~~~~-------------~l~~ll~~~~~~~P~v~i~i~~~~~~~~~~~l~~~~~dl~i~~~~~~~~~~ 157 (308)
T PRK10094 91 ERQVNIVINNLLYNPQ-------------AVASLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALAN 157 (308)
T ss_pred CCEEEEEECCHHHHHH-------------HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 5449999522011166-------------799999999997899889999602334799997499729999368877888
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCEEEECCCH---HHHHHHCC-CCCCEEECCHHHHHHHHHHHH
Q ss_conf 20023332222222221112222-----1111123343202310101---22332013-454213368557777554432
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD-----IRSFKDLTDKTVAQILGTD---LSRFAKEL-KSHLVFSHNFEQSLQLLLSKR 188 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~-----~~~~~dL~g~~V~~~~g~~---~~~~l~~~-~~~~~~~~~~~~~~~~l~~gr 188 (274)
.+. ..|.......+++..+.+. ..+.++|..........+. ........ +.....+++.+..+.++.+|-
T Consensus 158 ~~~-~~~l~~~~~~~v~~~~hpla~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aGl 236 (308)
T PRK10094 158 TFS-LDPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGV 236 (308)
T ss_pred CEE-EEECCCCHHHHHHCCCCHHHCCCCCCCHHHHHHCCEEEECCCCCCHHHHHEEEECCCCEEEECCHHHHHHHHHHCC
T ss_conf 769-9993130233210789844528999999999619656730651100020125507875499898999999999799
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCE-EECCCCCCCCCEEEEEECCC--HHHHHHHH
Q ss_conf 1003665589999998458766732-62367768770799981899--89999999
Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLF-KIADRMKDNSAVAFMMRKGN--NKLTRSIN 241 (274)
Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~--~~L~~~in 241 (274)
.= .+.+...+..++..- ..+ ...+....+.+++++-+|++ +.+...++
T Consensus 237 Gi-a~lP~~~v~~~l~~G----~LV~~~l~~~~~~~~l~l~wr~~~~~~~v~~~i~ 287 (308)
T PRK10094 237 GI-GFLPKSLCQSMIDNQ----QLVSRVIPTMRPPSPLSLAWRKFGSGKAVEDIVT 287 (308)
T ss_pred EE-ECCHHHHHHHHHHCC----CEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHH
T ss_conf 88-923499999998789----8899968999998089999977999879999999
No 110
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=67.02 E-value=7.4 Score=18.80 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=58.5
Q ss_pred CCCCCCHHHHHHHHHCCCCCC-CHHCCCCHHHHHH----HC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC---------
Q ss_conf 556689889886431032211-0000367567542----00--2333222222222111222211111233---------
Q gi|254781112|r 85 EFFETAVSGLITGLDTNRYDV-LVNVAITPERQKK----YD--FSIPYIAHRVLLVVRSDQQDIRSFKDLT--------- 148 (274)
Q Consensus 85 ~~~~~~~~~~~~~l~~g~~D~-~~~~~~t~eR~~~----~~--fs~p~~~~~~~~~~~~~~~~~~~~~dL~--------- 148 (274)
++..+....+-..+..|.+|+ +.|.-+-.|.... +. ....|.....++-++..-..+.+.+||.
T Consensus 48 ~i~~~r~~DIp~yV~~G~~DlGItG~D~l~E~~~~~~~~v~~~~~LgfG~c~LvvAvP~~w~dv~s~~dl~~~~~~~~~~ 127 (226)
T PRK13583 48 ELLFLSASEIPRELGAGRVDLGVTGEDLVREKLADWDKRVEIVARLGFGHADLVVAVPEIWIDVDTMADLDDVAADFRAR 127 (226)
T ss_pred EEEEECHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 89997555689999769865665022555422446145277632178561669999444013554400055664554421
Q ss_pred -CC--CEEEECCCHHHHHHHCCCCC---CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf -43--20231010122332013454---21336855777755443210036655899999984587
Q gi|254781112|r 149 -DK--TVAQILGTDLSRFAKELKSH---LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPH 208 (274)
Q Consensus 149 -g~--~V~~~~g~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~ 208 (274)
|+ ||+.-.-....+|..+.+.+ ++......|+ +-.-|-.|++ +|-...-..++.+..
T Consensus 128 ~~~~lrIATkyp~lt~~~f~~~gi~~~~ii~~~GavE~--aP~~GlaD~I-VDiv~TG~TLk~NgL 190 (226)
T PRK13583 128 HGRRLRIATKYWRLTQQFLSQKGVQDYRLVESLGATEG--APAAGSAEII-VDITSTGETLRANHL 190 (226)
T ss_pred CCCCEEEEECCCHHHHHHHHHCCCCCCEEEECCCCCCC--CCCCCCCCEE-EEEECCHHHHHHCCC
T ss_conf 45414764047326578898669964059977770213--5667873489-998487588998799
No 111
>PRK00178 tolB translocation protein TolB; Provisional
Probab=66.62 E-value=2.8 Score=21.39 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 95899962899872487046998488988521678997629985556689
Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETA 90 (274)
Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~ 90 (274)
..+.|++ +||.. ++.+. ...++.+.|...|...=.|.+++
T Consensus 34 ~~ipIAI----~pF~~---~~~~~---~~~~i~~iI~~DL~~sG~F~~l~ 73 (433)
T PRK00178 34 RAIPIAV----VPFGW---QGGSV---LPEDMAQIIGNDLRNSGYFEPIP 73 (433)
T ss_pred CEEEEEE----CCCCC---CCCCC---HHHHHHHHHHHHHHCCCCCEECC
T ss_conf 6040698----57666---68762---24899999998886288855248
No 112
>PRK04281 consensus
Probab=65.53 E-value=5.7 Score=19.52 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=23.4
Q ss_pred EEEEEEHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCCCCCCH
Q ss_conf 9885216789976299855566--8988988643103221100
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFE--TAVSGLITGLDTNRYDVLV 107 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~--~~~~~~~~~l~~g~~D~~~ 107 (274)
....++++.+++...+++++=- .+-+.+...+..|-=-++.
T Consensus 60 ~~~~~~I~~i~~~~~vpi~vGGGIrs~e~~~~ll~~GadkVii 102 (254)
T PRK04281 60 DTILHIIEEVAGQVFIPLTVGGGVRTVADIRRLLNAGADKVSI 102 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCEEECHHHHHHHHCCCCEEEE
T ss_conf 3089999999850796289977754518899999769988997
No 113
>PRK00830 consensus
Probab=64.18 E-value=4.9 Score=19.89 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=22.8
Q ss_pred EEEEEEHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCCCCCCH
Q ss_conf 9885216789976299855566--8988988643103221100
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFE--TAVSGLITGLDTNRYDVLV 107 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~--~~~~~~~~~l~~g~~D~~~ 107 (274)
....++++.+++...+++++=- .+-+.+...+..|-=-++.
T Consensus 64 ~~~~~~I~~i~~~~~~pi~vGGGIrs~e~~~~ll~~GadkVvI 106 (273)
T PRK00830 64 ATMIDVIERTAEEVFIPLTVGGGIRSIEDIRQILRAGADKVSV 106 (273)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCEEECCCHHHHHHCCCCEEEC
T ss_conf 4279999999986699589608843773289999769863983
No 114
>TIGR02743 TraW type-F conjugative transfer system protein TraW; InterPro: IPR014114 This entry represents TraW, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm , ..
Probab=62.70 E-value=8.8 Score=18.34 Aligned_cols=66 Identities=8% Similarity=0.189 Sum_probs=29.5
Q ss_pred EEEHHHHHHHCC-CCCCCCCCCHHHHHHHHHCCCCC------CCHHCCCCHHHHH-H----HCCCCCCCCCCCCCCCCCC
Q ss_conf 521678997629-98555668988988643103221------1000036756754-2----0023332222222221112
Q gi|254781112|r 70 IDLIKEVAHRLN-LKVEFFETAVSGLITGLDTNRYD------VLVNVAITPERQK-K----YDFSIPYIAHRVLLVVRSD 137 (274)
Q Consensus 70 ~dl~~~i~~~lg-~~~~~~~~~~~~~~~~l~~g~~D------~~~~~~~t~eR~~-~----~~fs~p~~~~~~~~~~~~~ 137 (274)
.|+++.|-++|. ++- .-.++++...+++.-.. .+.+++.|.+-+- + +.++..+.....-+++++|
T Consensus 34 ~D~L~~I~~rL~~l~~---sGe~~~~~q~~~~rv~e~v~rP~pv~~l~~t~~~~t~~~DPS~tl~~di~d~~G~v~~k~G 110 (217)
T TIGR02743 34 PDMLEVIEQRLKRLEQ---SGELKAMQQRFQERVLEHVKRPPPVPGLSTTETPKTFYFDPSITLARDILDEKGQVLAKKG 110 (217)
T ss_pred HHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCEEEECCC
T ss_conf 7799999999998612---4018999999999999860387876887665665168856727706476598851887068
Q ss_pred C
Q ss_conf 2
Q gi|254781112|r 138 Q 138 (274)
Q Consensus 138 ~ 138 (274)
.
T Consensus 111 t 111 (217)
T TIGR02743 111 T 111 (217)
T ss_pred E
T ss_conf 0
No 115
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=62.15 E-value=6.2 Score=19.28 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=54.4
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHH
Q ss_conf 88589589996289987248704699848898852167899762998555668988988643103221100003675675
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQ 116 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~ 116 (274)
..+...||+++... .+.+ |+.-++.-..-+..|++++++.+--...+++=+.|.+|++.--++ .++
T Consensus 26 sa~~~~LrmATTTS--------t~dt----GLLd~l~p~fE~~~g~~v~~vAvGTG~ALkmge~gdvDvv~vHap--k~E 91 (280)
T COG2998 26 SADAAELRMATTTS--------TEDT----GLLDVLLPKFEKYTGYDVQVVAVGTGKALKMGERGDVDVVIVHAP--KAE 91 (280)
T ss_pred CCCCCEEEEEEECC--------CCCC----CCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCCEEEEECC--HHH
T ss_conf 75420378854302--------4556----318887776643369658999812358775112688678998370--778
Q ss_pred HHHC---C---CCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 4200---2---333222222222111222-2111
Q gi|254781112|r 117 KKYD---F---SIPYIAHRVLLVVRSDQQ-DIRS 143 (274)
Q Consensus 117 ~~~~---f---s~p~~~~~~~~~~~~~~~-~~~~ 143 (274)
+.|. | ..|+...-..++-+++.+ .+++
T Consensus 92 ~~fv~~G~gv~r~~vmYNdFiiVgp~~dpA~~k~ 125 (280)
T COG2998 92 KEFVKDGFGVDRRPVMYNDFIIVGPADDPAGIKD 125 (280)
T ss_pred HHHHHCCCCCCCCCEEEEEEEEECCCCCCHHCCC
T ss_conf 9998727886676101311799877666111122
No 116
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=61.49 E-value=6.3 Score=19.23 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=24.9
Q ss_pred EEEEEEHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCCCCCCH
Q ss_conf 9885216789976299855566--8988988643103221100
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFE--TAVSGLITGLDTNRYDVLV 107 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~--~~~~~~~~~l~~g~~D~~~ 107 (274)
+...++++.+++...+++++-- .+-++....+..|-=-++.
T Consensus 60 ~~n~~~I~~I~~~~~ipi~vGGGIrs~e~~~~ll~~GadkVii 102 (253)
T PRK01033 60 EPNYELIENLASECFMPLCYGGGIKTVEQAKRIFSLGVEKVSI 102 (253)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 0169999999987699889868812168889998679866999
No 117
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=61.48 E-value=12 Score=17.46 Aligned_cols=52 Identities=8% Similarity=0.106 Sum_probs=40.9
Q ss_pred CCCCCCCEEEECCCH-----HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 123343202310101-----2233201345421336855777755443210036655
Q gi|254781112|r 145 KDLTDKTVAQILGTD-----LSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274)
Q Consensus 145 ~dL~g~~V~~~~g~~-----~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274)
..+.+.+|-++-+.. ...++++.+.++..+.|-.+++.++..+++|.+++|-
T Consensus 521 ~~~~~lrILvVEDn~iN~~V~~~~L~~lG~~v~~A~nG~eALe~~~~~~fDLILMDi 577 (779)
T PRK11091 521 MPLPALNILLVEDIELNVIVARSLLEKLGNSVDVAMTGKDALEMFKPGEYDLVLLDI 577 (779)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEEC
T ss_conf 688888189986889999999999997599999989999999985069999899828
No 118
>TIGR02294 nickel_nikA nickel ABC transporter, periplasmic nickel-binding protein; InterPro: IPR011980 Members of this family are periplasmic nickel-binding proteins of nickel ABC transporters. Nickel is bound specifically, albeit weakly, through water molecules positioned in the binding site. The amino acids whose side chains line the binding site include Tyr-44, Met-49, Trp-122, Arg-159, Trp-420, and Tyr-424 (numbering based on the precursor sequence of Escherichia coli NikA) with the Arg contributing a hydrogen bond indirectly through a water molecule ..
Probab=60.39 E-value=5.8 Score=19.44 Aligned_cols=78 Identities=9% Similarity=0.055 Sum_probs=53.0
Q ss_pred CCEEECCHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEC-C----CHHHHHHH
Q ss_conf 42133685577775544321003665----589999998458766732623677687707999818-9----98999999
Q gi|254781112|r 170 HLVFSHNFEQSLQLLLSKRTDATMIP----DIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRK-G----NNKLTRSI 240 (274)
Q Consensus 170 ~~~~~~~~~~~~~~l~~grvD~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~----~~~L~~~i 240 (274)
.+...++.+..+.++.+|++|.+.++ ..+....+.+...+..+......|....-+.+=-.+ + +...+.+|
T Consensus 201 ~vKVIPD~~TR~LAfe~Ge~dLi~G~~rGtG~i~~DtF~ql~~~~~Y~t~lS~P~~Tr~L~lNt~~kd~~~~Dl~VR~A~ 280 (513)
T TIGR02294 201 TVKVIPDAETRALAFESGEVDLIFGNERGTGVIDLDTFAQLKEDGKYQTALSQPMETRMLLLNTGKKDEATSDLAVRQAL 280 (513)
T ss_pred EEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 78873673368887631861023236656740142257763128773201047511245433220102200026899997
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781112|r 241 NEILCAI 247 (274)
Q Consensus 241 n~~l~~l 247 (274)
|.++.+-
T Consensus 281 nhavnK~ 287 (513)
T TIGR02294 281 NHAVNKQ 287 (513)
T ss_pred HHCCCHH
T ss_conf 4034768
No 119
>PRK10693 response regulator of RpoS; Provisional
Probab=58.24 E-value=9.6 Score=18.11 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=16.1
Q ss_pred EHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 16789976299855566898898864310322110
Q gi|254781112|r 72 LIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVL 106 (274)
Q Consensus 72 l~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~ 106 (274)
++..+.++.|+++.. ..+-...++.++....|++
T Consensus 22 ~l~~~L~~~G~~V~~-A~nG~eAl~~l~~~~pDLI 55 (337)
T PRK10693 22 LLDSWFSSLGATTVL-AADGVDALELLGGFTPDLM 55 (337)
T ss_pred HHHHHHHHCCCEEEE-ECCHHHHHHHHHCCCCCEE
T ss_conf 999999978999999-8999999999865899999
No 120
>PRK02145 consensus
Probab=56.50 E-value=7.6 Score=18.74 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=25.9
Q ss_pred EEEEEEHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCCCCCCHH
Q ss_conf 9885216789976299855566--89889886431032211000
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFE--TAVSGLITGLDTNRYDVLVN 108 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~--~~~~~~~~~l~~g~~D~~~~ 108 (274)
+...++++.+++...+++++=- .+-+++...+..|---++.+
T Consensus 61 ~~~~~~I~~i~~~~~iPi~vGGGIrs~e~~~~ll~~GadkVii~ 104 (257)
T PRK02145 61 DLILPIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVSMN 104 (257)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEH
T ss_conf 40899999999656874896277304688999998199889841
No 121
>PRK03629 tolB translocation protein TolB; Provisional
Probab=56.38 E-value=4.6 Score=20.08 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=17.7
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCC
Q ss_conf 5899962899872487046998488988521678997629985556
Q gi|254781112|r 42 ALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFF 87 (274)
Q Consensus 42 ~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~ 87 (274)
.+.|++ +||.+.. .+ ....|+.+.|...|...=.|.
T Consensus 34 ~~PIAV----~pF~~~g---~~---~~~~~i~~II~~DL~rSG~F~ 69 (430)
T PRK03629 34 ARPIGV----VPFKWAG---PG---AAPEDIGGIVAADLRNSGKFN 69 (430)
T ss_pred CCCEEE----ECCCCCC---CC---CCHHHHHHHHHHHHHHCCCCE
T ss_conf 325699----2864478---88---646789999987687577815
No 122
>PRK01742 tolB translocation protein TolB; Provisional
Probab=55.07 E-value=7.2 Score=18.86 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=11.6
Q ss_pred EEEHHHHHHHCCCCCCCCCC
Q ss_conf 52167899762998555668
Q gi|254781112|r 70 IDLIKEVAHRLNLKVEFFET 89 (274)
Q Consensus 70 ~dl~~~i~~~lg~~~~~~~~ 89 (274)
.|+.+-|...|...=.|.+.
T Consensus 54 ~~i~~vI~~DL~~SG~F~~i 73 (430)
T PRK01742 54 EDIAKIIAADLRNSGKFNPI 73 (430)
T ss_pred HHHHHHHHHHHHCCCCCCCC
T ss_conf 78999998777608472625
No 123
>PRK01659 consensus
Probab=55.05 E-value=9.6 Score=18.09 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=24.9
Q ss_pred EEEEEEHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCCCCCCHH
Q ss_conf 9885216789976299855566--89889886431032211000
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFE--TAVSGLITGLDTNRYDVLVN 108 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~--~~~~~~~~~l~~g~~D~~~~ 108 (274)
+...++++.+++...+++++=- .+-+.....+..|-=-++.+
T Consensus 60 ~~n~~~I~~i~~~~~ipi~vGGGIrs~e~~~~~l~~GadkViig 103 (252)
T PRK01659 60 KTMVDVVEKVAAKVFIPLTVGGGISSVKDMKRLLRAGADKVSIN 103 (252)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCEECHHHHHHHHHCCCCEEEEC
T ss_conf 64899999999756974799633200688889874488559831
No 124
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=53.55 E-value=11 Score=17.65 Aligned_cols=61 Identities=11% Similarity=0.218 Sum_probs=32.6
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCC--HH---HHHHHHHCCCCCCCH
Q ss_conf 7885895899962899872487046998488988521678997629985556689--88---988643103221100
Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETA--VS---GLITGLDTNRYDVLV 107 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~--~~---~~~~~l~~g~~D~~~ 107 (274)
.+..+++|=+.+..---|| |... ++=++..+++.|+++-+.... .+ +.++.+...++|++.
T Consensus 22 ~a~a~~TIgvivp~i~npf-f~~v----------~~gie~~a~~~Gy~l~v~~s~~d~~~q~~~i~~li~~~vdgii 87 (295)
T PRK10653 22 NAMAKDTIALVVSTLNNPF-FVSL----------KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 (295)
T ss_pred HHHCCCEEEEEECCCCCHH-HHHH----------HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 7752997999948987979-9999----------9999999997699899983999999999999999976998899
No 125
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=53.52 E-value=17 Score=16.64 Aligned_cols=55 Identities=11% Similarity=0.239 Sum_probs=26.0
Q ss_pred HHHHHHHCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCC-CCCCCCCCCHHHHHHHHHCC
Q ss_conf 99998417887885895899962899872487046998488988521678997629-98555668988988643103
Q gi|254781112|r 26 FSYYFVIYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLN-LKVEFFETAVSGLITGLDTN 101 (274)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg-~~~~~~~~~~~~~~~~l~~g 101 (274)
++.+..+.+.+|++-|++ ...| |. . +.|++..|-+++. ++ ..-.|+++.+.+++.
T Consensus 7 ~~~~~~~~~~~AkDlG~~----G~t~-pI--~-----------E~DlL~~I~~RL~~~e---~sGel~~~q~~~~~r 62 (210)
T PRK13738 7 IALLIWGQSVAAADLGTW----GDLW-PV--K-----------EPDMLTVIMQRLTALE---QSGEMGRKMDAFKER 62 (210)
T ss_pred HHHHHHCCHHHHHHCCCC----CCCC-CC--C-----------CHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHH
T ss_conf 999996743247645764----4542-63--5-----------2779999999999878---577499999999999
No 126
>PRK11899 prephenate dehydratase; Provisional
Probab=53.47 E-value=9.6 Score=18.11 Aligned_cols=113 Identities=7% Similarity=0.087 Sum_probs=53.4
Q ss_pred CCCCC-CCHHHHHHHHHCCCCCCC-HHC------CCCHHHHHHHCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55566-898898864310322110-000------36756754200233------32222222221112222111112334
Q gi|254781112|r 84 VEFFE-TAVSGLITGLDTNRYDVL-VNV------AITPERQKKYDFSI------PYIAHRVLLVVRSDQQDIRSFKDLTD 149 (274)
Q Consensus 84 ~~~~~-~~~~~~~~~l~~g~~D~~-~~~------~~t~eR~~~~~fs~------p~~~~~~~~~~~~~~~~~~~~~dL~g 149 (274)
.+.++ .+++.+++++++|++|.. ..+ ++.+- .+-+.-+. -++.....++.+++.. +.++..+..
T Consensus 28 ~~~v~~~s~~~vf~aV~~g~~d~gvvPiENS~eG~V~~~-~dll~~~~l~I~~E~~l~I~h~L~~~~~~~-l~~I~~VyS 105 (284)
T PRK11899 28 MEPLPCATFEDAFEAVESGEADLAMIPIENSLAGRVADI-HHLLPESGLHIVGEYFLPIHHQLMALPGAT-LEDIKTVHS 105 (284)
T ss_pred CCEECCCCHHHHHHHHHCCCCCEEEEEECCCCEEEHHHH-HHHHCCCCCEEEEEEEEEEEEEEEECCCCC-HHHCEEEEE
T ss_conf 736606999999999977998879986416764756888-987573898799988650114564079998-541779997
Q ss_pred CCEEEECCCH-HHHHHHCCCCCCEEECCHHHHHHHHHH--HHHHCCCCCHHHHHHH
Q ss_conf 3202310101-223320134542133685577775544--3210036655899999
Q gi|254781112|r 150 KTVAQILGTD-LSRFAKELKSHLVFSHNFEQSLQLLLS--KRTDATMIPDIPFFNF 202 (274)
Q Consensus 150 ~~V~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~--grvD~~~~~~~~~~~~ 202 (274)
+ ..... ..+|+++++.+.+.+.+...+.+.+.. .+-.++++...-+..|
T Consensus 106 H----Pqal~QC~~~L~~~~~~~~~~~sta~Aa~~v~~~~~~~~AAI~s~~aa~~y 157 (284)
T PRK11899 106 H----PHALGQCRKIIRALGLKPVVAADTAGAAREVAERGDPSMAALASRLAAELY 157 (284)
T ss_pred E----HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCEEECCHHHHHHHC
T ss_conf 5----489999999999769824994380999999996699870110608565224
No 127
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=53.46 E-value=7.7 Score=18.69 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=28.0
Q ss_pred EEEEEHHHHHHHCCCCCCCCCC--CHHHHHHHHHCC
Q ss_conf 8852167899762998555668--988988643103
Q gi|254781112|r 68 FDIDLIKEVAHRLNLKVEFFET--AVSGLITGLDTN 101 (274)
Q Consensus 68 ~~~dl~~~i~~~lg~~~~~~~~--~~~~~~~~l~~g 101 (274)
|+.+=+..++++||+++-++|+ +|.|++.-+++.
T Consensus 110 ~d~~~A~~~~e~lGYPvV~KP~~GSWGRlV~~~~d~ 145 (289)
T TIGR02144 110 FDREAALKAAEELGYPVVLKPVIGSWGRLVSKIRDK 145 (289)
T ss_pred ECHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCH
T ss_conf 286899999997089889708888437887640378
No 128
>pfam06510 DUF1102 Protein of unknown function (DUF1102). This family consists of several hypothetical archaeal proteins of unknown function.
Probab=53.25 E-value=16 Score=16.79 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=6.2
Q ss_pred CEEEEEECCCCC
Q ss_conf 724870469984
Q gi|254781112|r 53 PHSFHAQDGRGE 64 (274)
Q Consensus 53 P~~~~~~d~~g~ 64 (274)
||.|.+ .+|+
T Consensus 52 PY~yi~--~~Gk 61 (183)
T pfam06510 52 PYVYLN--NNGK 61 (183)
T ss_pred CEEEEC--CCCE
T ss_conf 458984--7984
No 129
>TIGR00070 hisG ATP phosphoribosyltransferase; InterPro: IPR001348 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions . ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the two forms of ATP phosphoribosyltransferase: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity . The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined , . The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplamsic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process.
Probab=52.66 E-value=4.7 Score=20.02 Aligned_cols=147 Identities=15% Similarity=0.171 Sum_probs=85.6
Q ss_pred HHHHCCCCCC-CHHCCCCHH----HHHH-----HCCC--CCCCCCCCCCCCCCCC-CCCCCCCCCC----CC--CEEEEC
Q ss_conf 6431032211-000036756----7542-----0023--3322222222211122-2211111233----43--202310
Q gi|254781112|r 96 TGLDTNRYDV-LVNVAITPE----RQKK-----YDFS--IPYIAHRVLLVVRSDQ-QDIRSFKDLT----DK--TVAQIL 156 (274)
Q Consensus 96 ~~l~~g~~D~-~~~~~~t~e----R~~~-----~~fs--~p~~~~~~~~~~~~~~-~~~~~~~dL~----g~--~V~~~~ 156 (274)
..+..|.+|+ +.|.-.-.| |... +..- .+|-.....+-+..+. +.+++++||+ |+ +|+.-.
T Consensus 58 ~~V~~G~aDlGI~G~D~l~EE~L~~~~~~~~~~V~~l~dL~fG~c~L~vA~p~~~yP~~~~~~dl~~kvGg~ev~IAT~F 137 (317)
T TIGR00070 58 TYVEDGVADLGITGEDVLREELLNRNVDSELKNVEILEDLNFGGCKLVVAVPEDSYPDYRGPEDLKEKVGGKEVRIATEF 137 (317)
T ss_pred HHHHCCCEEEEEECCEEEEECHHCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCEEEEEECC
T ss_conf 13226625334861024431011131114652325553268997136887470137876873000121589648998267
Q ss_pred CCHHHHHHHCCC------CC--CEEECCHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEE
Q ss_conf 101223320134------54--213368557777554432--10036655899999984587667326236776877079
Q gi|254781112|r 157 GTDLSRFAKELK------SH--LVFSHNFEQSLQLLLSKR--TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVA 226 (274)
Q Consensus 157 g~~~~~~l~~~~------~~--~~~~~~~~~~~~~l~~gr--vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (274)
=-...+|+++++ .+ +.......|+ +..-|- .|+ ++|-...-..++.+..- ..+.......-.
T Consensus 138 P~~a~~Yf~~~gGttvek~~~~i~~L~GSvE~--Ap~~G~PeAD~-I~DLvstG~TL~~NgL~-----~id~i~~ks~a~ 209 (317)
T TIGR00070 138 PHLAKKYFRELGGTTVEKLSVEIIELNGSVEL--APLIGIPEADA-IVDLVSTGTTLRENGLR-----EIDVILDKSSAR 209 (317)
T ss_pred HHHHHHHHHHCCCCEEEEEEEEEEECCCCEEE--ECCCCCCCCCE-EEEEECCHHHHHHCCCE-----EEEEEECCEEEE
T ss_conf 57999999861894466555799822263860--01278973000-25421112789753968-----898884240378
Q ss_pred EEEECC------CHHHHHHHHHHHHHHHHC
Q ss_conf 998189------989999999999999979
Q gi|254781112|r 227 FMMRKG------NNKLTRSINEILCAIHLD 250 (274)
Q Consensus 227 ~~~~k~------~~~L~~~in~~l~~l~~~ 250 (274)
+..+|. +.++.+.+-..|+...+.
T Consensus 210 LI~N~~S~~~~~~~~~i~~l~~~i~~V~~a 239 (317)
T TIGR00070 210 LIANRESYKDKSKKQLIDELVTRIKGVIEA 239 (317)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 843675568641079999999877776400
No 130
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=52.30 E-value=11 Score=17.83 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=24.4
Q ss_pred EEEEEEHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCCCCCCH
Q ss_conf 9885216789976299855566--8988988643103221100
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFE--TAVSGLITGLDTNRYDVLV 107 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~--~~~~~~~~~l~~g~~D~~~ 107 (274)
+...++++.+++...+++++=- .+-+++...+..|-=-++.
T Consensus 60 ~~n~~~I~~i~~~~~ipi~vGGGIrs~e~~~~ll~~GadkVii 102 (232)
T TIGR03572 60 EPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSI 102 (232)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECEEEHHHHHHHHHCCCCEEEE
T ss_conf 2179999999997298589971330389999999769968993
No 131
>PRK02621 consensus
Probab=52.10 E-value=12 Score=17.58 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=25.0
Q ss_pred EEEEEEHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCCCCCCHH
Q ss_conf 9885216789976299855566--89889886431032211000
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFE--TAVSGLITGLDTNRYDVLVN 108 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~--~~~~~~~~~l~~g~~D~~~~ 108 (274)
....++++.+++...+++++=- .+-+.+...+..|---++.+
T Consensus 60 ~~~~~~I~~i~~~~~ipi~vGGGIrs~e~~~~ll~~GadkVii~ 103 (254)
T PRK02621 60 ATLIDVVYRTAEQVFIPLTVGGGISSLEGIKELLRAGADKVSLN 103 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCEEEHHHHHHHHHCCCCEEEEC
T ss_conf 42899999999867985899633535799999997499989998
No 132
>pfam00800 PDT Prephenate dehydratase. This protein is involved in Phenylalanine biosynthesis. This protein catalyses the decarboxylation of prephenate to phenylpyruvate.
Probab=51.55 E-value=8.9 Score=18.29 Aligned_cols=117 Identities=10% Similarity=0.158 Sum_probs=60.0
Q ss_pred CCCCCCCCCC-CHHHHHHHHHCCCCCCCH-HC------CCCHHHHHHHCC-----CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2998555668-988988643103221100-00------367567542002-----3332222222221112222111112
Q gi|254781112|r 80 LNLKVEFFET-AVSGLITGLDTNRYDVLV-NV------AITPERQKKYDF-----SIPYIAHRVLLVVRSDQQDIRSFKD 146 (274)
Q Consensus 80 lg~~~~~~~~-~~~~~~~~l~~g~~D~~~-~~------~~t~eR~~~~~f-----s~p~~~~~~~~~~~~~~~~~~~~~d 146 (274)
.+-..++++. ++..+++.+.+|++|... .+ ++.+--+--..+ ..-++.....++.+++. +++|
T Consensus 19 ~~~~~~~~~~~s~~~v~~av~~g~~d~gvvPiENS~~G~V~~~~DlL~~~~l~I~~E~~l~I~~~L~~~~~~----~l~~ 94 (181)
T pfam00800 19 FGQSVELVPCPSIEDVFEAVENGEADYAVVPIENSIEGSVNETLDLLLESDLKIVGEVVLPIHHCLLARPGT----DLED 94 (181)
T ss_pred CCCCCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCC----CCCC
T ss_conf 399883786699999999997799866776221245556789999998499879999986221001017998----6012
Q ss_pred CCCCCEEEE-CCCH-HHHHHHCC--CCCCEEECCHHHHHHHHH--HHHHHCCCCCHHHHHHH
Q ss_conf 334320231-0101-22332013--454213368557777554--43210036655899999
Q gi|254781112|r 147 LTDKTVAQI-LGTD-LSRFAKEL--KSHLVFSHNFEQSLQLLL--SKRTDATMIPDIPFFNF 202 (274)
Q Consensus 147 L~g~~V~~~-~g~~-~~~~l~~~--~~~~~~~~~~~~~~~~l~--~grvD~~~~~~~~~~~~ 202 (274)
++ +|... ..-. ...|++++ +.+++.+.|...+.+.+. +++-++++++..-+..|
T Consensus 95 I~--~V~SHpqal~QC~~~l~~~~p~~~~~~~~sTa~Aa~~v~~~~~~~~aAIas~~aa~~y 154 (181)
T pfam00800 95 IK--TVYSHPQALAQCREFLEKHLPGAERVPVSSTAAAAKIVAAEGDKGAAAIASELAAELY 154 (181)
T ss_pred CE--EEEEEHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEEEECHHHHHHHC
T ss_conf 11--7884279999999999984899889982765999999995699881340509899885
No 133
>PRK11898 prephenate dehydratase; Provisional
Probab=51.21 E-value=10 Score=17.86 Aligned_cols=113 Identities=13% Similarity=0.122 Sum_probs=59.1
Q ss_pred CCCCCC-CCHHHHHHHHHCCCCCCC-HH--------CCCCHHHH-HH--H-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 855566-898898864310322110-00--------03675675-42--0-02333222222222111222211111233
Q gi|254781112|r 83 KVEFFE-TAVSGLITGLDTNRYDVL-VN--------VAITPERQ-KK--Y-DFSIPYIAHRVLLVVRSDQQDIRSFKDLT 148 (274)
Q Consensus 83 ~~~~~~-~~~~~~~~~l~~g~~D~~-~~--------~~~t~eR~-~~--~-~fs~p~~~~~~~~~~~~~~~~~~~~~dL~ 148 (274)
.+++++ .++...++++++|++|.. .. +..|-+.- .. + ..-.-++.....++.+.+ +++|++
T Consensus 26 ~~~~~~~~s~~~vf~aV~~g~~d~gvvPiENS~~G~V~~t~D~L~~~~~l~I~gE~~l~I~h~Ll~~~~-----~l~~I~ 100 (285)
T PRK11898 26 EAELVPYDSIPDVLDAVEAGEVDYAVVPIENSIEGSVNPTLDYLAHGSPLQIVAEIVLPIAQHLLVRPG-----HLADIR 100 (285)
T ss_pred CCEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCEECHHHHHHHHCCCCCEEEEEEEEEEEEEEECCCC-----CHHHCE
T ss_conf 952786699999999997799877998780458467099899872059958999999877469862799-----865583
Q ss_pred CCCEEE-ECCCH-HHHHHHCC--CCCCEEECCHHHHHHHHHHHHH--HCCCCCHHHHHHH
Q ss_conf 432023-10101-22332013--4542133685577775544321--0036655899999
Q gi|254781112|r 149 DKTVAQ-ILGTD-LSRFAKEL--KSHLVFSHNFEQSLQLLLSKRT--DATMIPDIPFFNF 202 (274)
Q Consensus 149 g~~V~~-~~g~~-~~~~l~~~--~~~~~~~~~~~~~~~~l~~grv--D~~~~~~~~~~~~ 202 (274)
+|-. ...-. ...|++++ +.+++.+.|...+.+++..+.- .++++...-+..|
T Consensus 101 --~V~SHpqal~QC~~~L~~~~p~~~~v~~~sTa~Aa~~v~~~~~~~~AAIas~~aa~~y 158 (285)
T PRK11898 101 --TVYSHPQALAQCRKWLAEHLPGAELEPANSTAAAAQYVAEHPAEPIAAIASERAAELY 158 (285)
T ss_pred --EEEECHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEEECCHHHHHHHC
T ss_conf --7872347999999999973888689990758999999984899771440447662124
No 134
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=50.51 E-value=11 Score=17.65 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=25.4
Q ss_pred EEEEEEHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCCCCCCHH
Q ss_conf 9885216789976299855566--89889886431032211000
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFE--TAVSGLITGLDTNRYDVLVN 108 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~--~~~~~~~~~l~~g~~D~~~~ 108 (274)
+...++++.+++...+++++=- .+-+.+...+..|---++.+
T Consensus 60 ~~~~~~I~~i~~~~~~pi~vGGGIrs~e~~~~ll~~GadkVvig 103 (253)
T PRK02083 60 DTMKDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSIN 103 (253)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 41799999999863987785176213898768987798789999
No 135
>PRK02747 consensus
Probab=49.86 E-value=13 Score=17.38 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=24.8
Q ss_pred EEEEEEHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCCCCCCHH
Q ss_conf 9885216789976299855566--89889886431032211000
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFE--TAVSGLITGLDTNRYDVLVN 108 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~--~~~~~~~~~l~~g~~D~~~~ 108 (274)
+...++++.+++...+++++=- .+-+.+...+..|-=-++.+
T Consensus 60 ~~~~~lI~~i~~~~~ipi~vGGGIrs~e~~~~ll~~GadkViig 103 (257)
T PRK02747 60 GTMLDVVARTAEQCFMPLTVGGGVRTVDDIRKLLLAGADKVSIN 103 (257)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 52899999999866998898488207388789987699689834
No 136
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=49.83 E-value=9.8 Score=18.03 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=16.1
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 36855777755443210036655
Q gi|254781112|r 174 SHNFEQSLQLLLSKRTDATMIPD 196 (274)
Q Consensus 174 ~~~~~~~~~~l~~grvD~~~~~~ 196 (274)
..+.+.....+..|++|+++...
T Consensus 208 aG~~ehf~eaf~~~~adAaLAAs 230 (256)
T COG0107 208 AGKPEHFVEAFTEGKADAALAAS 230 (256)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 89688999999815700887644
No 137
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=49.83 E-value=19 Score=16.27 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=38.5
Q ss_pred CCCCCCCEEEECCCH---------HHHHHHCCCCCCEEE-----------CCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 123343202310101---------223320134542133-----------68557777554432100366558999999
Q gi|254781112|r 145 KDLTDKTVAQILGTD---------LSRFAKELKSHLVFS-----------HNFEQSLQLLLSKRTDATMIPDIPFFNFL 203 (274)
Q Consensus 145 ~dL~g~~V~~~~g~~---------~~~~l~~~~~~~~~~-----------~~~~~~~~~l~~grvD~~~~~~~~~~~~~ 203 (274)
.++.|++|+++..-. ....++..+.+++.+ ...+.++.++.+|++|++..........+
T Consensus 138 ~gv~G~rIAVQlHGa~~~~eP~p~~~~~Lr~aGAeV~~V~vYRW~~p~d~~~l~~Lv~~i~~g~vDAVtFTSAPaa~al 216 (381)
T PRK07239 138 EGVAGKRIAVQLHGAADEWDPLPEFLEALRAAGAEVVPVPVYRWVPPPDGGPFDRLVDLIATRQLDAVTFTSAPAVAAL 216 (381)
T ss_pred CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCEECCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 7988888999814766666878899999997798688956543269998547999999997088888996578999999
No 138
>TIGR03298 argP transcriptional regulator, ArgP family. ArgP used to be known as IciA. ArgP is a positive regulator of argK. It is a negative autoregulator in presence of arginine. It competes with DnaA for oriC iteron (13-mer) binding. It activates dnaA and nrd transcription. It has been demonstrated to be part of the pho regulon (PMID:10589831). ArgP mutants convey canavanine (an L-arginine structural homolog) sensitivity (PMID: 15150242).
Probab=48.94 E-value=20 Score=16.19 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=94.3
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHH
Q ss_conf 89589996289987248704699848898852167899762998555668988988643103221100003675675420
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKY 119 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~ 119 (274)
.+.++|++..+.. + .+..+.+..+.+.-++++++...+.++.++.++.|.+|++......+. ..+
T Consensus 89 ~g~l~i~~~~~~~----------~---~~l~p~l~~f~~~~~v~l~l~~~~~~~~~d~l~~g~~~~ai~~~~~~~--~~~ 153 (292)
T TIGR03298 89 PVTLSIAVNADSL----------A---TWFLPALAPVLAQEGVLLDLVVEDQDHTAELLRSGEVLGAVTTQAKPV--QGC 153 (292)
T ss_pred CEEEEEEECHHHH----------H---HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEECCCCCC--CCC
T ss_conf 4258887635778----------8---878999999998089879998545245899985697589997578889--886
Q ss_pred CCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCEEE-ECCC-HHHHHHHCC---C--CCCEEECCHHHHHHHHHHH
Q ss_conf 023332222222221112-----22211111233432023-1010-122332013---4--5421336855777755443
Q gi|254781112|r 120 DFSIPYIAHRVLLVVRSD-----QQDIRSFKDLTDKTVAQ-ILGT-DLSRFAKEL---K--SHLVFSHNFEQSLQLLLSK 187 (274)
Q Consensus 120 ~fs~p~~~~~~~~~~~~~-----~~~~~~~~dL~g~~V~~-~~g~-~~~~~l~~~---~--~~~~~~~~~~~~~~~l~~g 187 (274)
. ..|+......++...+ .+...+.+||.+...-. ..+. ....+.... . .....+++.+...+++.+|
T Consensus 154 ~-~~~L~~~~~~~vasP~~~~~~~~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~~~~~v~aG 232 (292)
T TIGR03298 154 R-VVPLGAMRYLAVASPAFAARYFPDGVTAEALARAPVIVFNRKDDLQDRFLRRLFGLPVSPPRHYVPSSEGFVEAARAG 232 (292)
T ss_pred E-EEECCCEEEEEEECHHHHHHCCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHC
T ss_conf 7-999114018999888999862899999999936987996599647899998505777665168988899999999949
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHH
Q ss_conf 21003665589999998458766732623677687707999818-998999999999999997
Q gi|254781112|r 188 RTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRK-GNNKLTRSINEILCAIHL 249 (274)
Q Consensus 188 rvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~~L~~~in~~l~~l~~ 249 (274)
..= .+.+...+...+..- ..+.+.+....+.++++..++ .++.++..++..++..++
T Consensus 233 lGi-a~lP~~~v~~~l~~G----~LV~llp~~~~~~~l~~~~~r~~s~~~r~f~d~l~~~ar~ 290 (292)
T TIGR03298 233 LGW-GMVPELQAEPHLAAG----RLVDLAPGRALDVPLYWHHWRLESRVLERLTDAVVAAARR 290 (292)
T ss_pred CEE-EECCHHHHHHHHHCC----CEEEECCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 988-969699999998589----8588499987982164806686788999999999999986
No 139
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=48.60 E-value=20 Score=16.16 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCEEEEC----CCHHHHHHH-------CCCC--------------CCEE
Q ss_conf 333222222222111222-2111112334--3202310----101223320-------1345--------------4213
Q gi|254781112|r 122 SIPYIAHRVLLVVRSDQQ-DIRSFKDLTD--KTVAQIL----GTDLSRFAK-------ELKS--------------HLVF 173 (274)
Q Consensus 122 s~p~~~~~~~~~~~~~~~-~~~~~~dL~g--~~V~~~~----g~~~~~~l~-------~~~~--------------~~~~ 173 (274)
|.||. +..+|++|++++ .|++++||-. -.|.... |..--.||- ..+. ++..
T Consensus 126 s~Pyt-StivFlVRkGNPK~I~DW~DL~k~gV~VItpNPKTSGgARWN~Laawa~a~~~~~gdeaka~~fV~~L~~nvpv 204 (348)
T COG1613 126 SAPYT-STIVFLVRKGNPKQIRDWDDLVKPGVQVITPNPKTSGGARWNYLAAWAYALKTNGGDEAKAKDFVGKLYKNVPV 204 (348)
T ss_pred CCCCC-CEEEEEEECCCCCCCCCHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 87733-06999993699655675577465886797689988765227889998998714799889999999999846832
Q ss_pred -ECCHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC-CCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf -3685577775-5443210036655899999984587667326236-776877079998189-98999999999999997
Q gi|254781112|r 174 -SHNFEQSLQL-LLSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD-RMKDNSAVAFMMRKG-NNKLTRSINEILCAIHL 249 (274)
Q Consensus 174 -~~~~~~~~~~-l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~ 249 (274)
-.+-..+-.. ..+|-.|+.+.-+..+....++...+...+..+. ......+.+. +.++ +..=-..+-.+..+..-
T Consensus 205 ld~gaRgAT~tF~qrgiGDVLi~wENEA~la~~e~g~~~feiV~Ps~si~aEpPVAV-Vd~~vdkkgtr~vAeAyl~yLy 283 (348)
T COG1613 205 LDTGARGATTTFVQRGIGDVLIAWENEALLALNELGGDKFEIVTPSVSILAEPPVAV-VDKNVDKKGTRKVAEAYLKYLY 283 (348)
T ss_pred CCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCCEECCCEEEEECCCEEE-EECCCCCCCCHHHHHHHHHHHC
T ss_conf 458852125788863866478872418888799746887668768602660697478-7511233356899999998755
Q ss_pred CCHHHHHHHH
Q ss_conf 9859999987
Q gi|254781112|r 250 DGTYKKIFDR 259 (274)
Q Consensus 250 ~G~~~~I~~k 259 (274)
|.+-++|..|
T Consensus 284 s~~gQ~i~Ak 293 (348)
T COG1613 284 SPEGQEIAAK 293 (348)
T ss_pred CHHHHHHHHH
T ss_conf 8388899998
No 140
>COG0583 LysR Transcriptional regulator [Transcription]
Probab=47.74 E-value=20 Score=16.07 Aligned_cols=154 Identities=13% Similarity=0.072 Sum_probs=77.6
Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC
Q ss_conf 2167899762998555668988988643103221100003675675420023332222222221112222111--11233
Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRS--FKDLT 148 (274)
Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~--~~dL~ 148 (274)
.++....++.. ++.+...........+.+|++|++...... .... -....+.......+++..+.+.... ++++.
T Consensus 109 ~~l~~f~~~~P-~~~~~~~~~~~~~~~l~~~~~D~~i~~~~~-~~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (297)
T COG0583 109 PLLARFRARYP-EIELELGTSDRLLEDLVEGELDLAIRAGPP-PPPD-GLVARPLFSEELVLVVPASHPLAARHGLPDLP 185 (297)
T ss_pred HHHHHHHHHCC-CEEEEEECCHHHHHHHHCCCCEEEEEECCC-CCCC-CEEEEEEECCCEEEEEECCCHHHHCCCCCCCC
T ss_conf 99999999789-839998256649999877993499995886-6888-74688960364799995784665147864477
Q ss_pred CCCEEEECCC-HH----HHHHHCCC---CCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC-CC
Q ss_conf 4320231010-12----23320134---5421336855777755443210036655899999984587667326236-77
Q gi|254781112|r 149 DKTVAQILGT-DL----SRFAKELK---SHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD-RM 219 (274)
Q Consensus 149 g~~V~~~~g~-~~----~~~l~~~~---~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 219 (274)
.......... .. .......+ .......+......++.+|.. ..+.+...+..+.. +. ....... .+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~g-i~~~p~~~~~~~~~--~~--~~~~~~~~~~ 260 (297)
T COG0583 186 GEPLILLEHGCILRRLLDQALALAGWRPRIRLEVNSAEALLQAVAAGLG-IALLPESLARPDLA--GR--LVRVLPLPPP 260 (297)
T ss_pred CCHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCC-EEEECHHHHHHHHC--CC--CEEEECCCCC
T ss_conf 2412306765315776677888624666865999909999999996998-38641999988754--89--1899547778
Q ss_pred CCCCCEEEEEECC
Q ss_conf 6877079998189
Q gi|254781112|r 220 KDNSAVAFMMRKG 232 (274)
Q Consensus 220 ~~~~~~~~~~~k~ 232 (274)
.....+++..+++
T Consensus 261 ~~~~~~~~~~~~~ 273 (297)
T COG0583 261 PLPRPLYLVWRKS 273 (297)
T ss_pred CCCCEEEEEEECC
T ss_conf 8776399999588
No 141
>PRK13684 Ycf48-like protein; Provisional
Probab=46.72 E-value=17 Score=16.50 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 9579999999999999999
Q gi|254781112|r 1 MRRLLRDLRKIFFSKYLFF 19 (274)
Q Consensus 1 m~~~~~~mk~~~~~~~l~~ 19 (274)
|+++|++.++++...++.+
T Consensus 1 m~~~~~~~~~l~l~~~~~~ 19 (333)
T PRK13684 1 MKRLLKSLLNLLLLLALGL 19 (333)
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 9268888999999999998
No 142
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=46.60 E-value=13 Score=17.38 Aligned_cols=29 Identities=28% Similarity=0.641 Sum_probs=15.8
Q ss_pred CCCCCCCCCCH---H--HHHHHHHCCCCCCCHHC
Q ss_conf 99855566898---8--98864310322110000
Q gi|254781112|r 81 NLKVEFFETAV---S--GLITGLDTNRYDVLVNV 109 (274)
Q Consensus 81 g~~~~~~~~~~---~--~~~~~l~~g~~D~~~~~ 109 (274)
|++++|-..+= . .++.+|+.|++|++.|+
T Consensus 471 Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGI 504 (667)
T TIGR00631 471 GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI 504 (667)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 8379871455789999999998447884088600
No 143
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=46.54 E-value=16 Score=16.80 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=24.8
Q ss_pred EEEEEEHHHHHHHCCCCCCCC--CCCHHHHHHHHHCCCCCCCHH
Q ss_conf 988521678997629985556--689889886431032211000
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFF--ETAVSGLITGLDTNRYDVLVN 108 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~--~~~~~~~~~~l~~g~~D~~~~ 108 (274)
+...++++.+++...+++++= ..+-+.....+..|---++.+
T Consensus 57 ~~n~~~i~~i~~~~~~pi~vGGGIrs~~~~~~~l~~GadkVvig 100 (243)
T cd04731 57 ETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHCCCCEEEEC
T ss_conf 00799999999867986899850664799999997799789989
No 144
>pfam01715 IPPT IPP transferase. This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37).
Probab=46.19 E-value=22 Score=15.92 Aligned_cols=44 Identities=9% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHH---HHHHHCCCCCC
Q ss_conf 707999818998999999999999997985999---99876788877
Q gi|254781112|r 223 SAVAFMMRKGNNKLTRSINEILCAIHLDGTYKK---IFDRYFDKNII 266 (274)
Q Consensus 223 ~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~---I~~kw~g~d~~ 266 (274)
..+.+.+..+.+.|.+.|++.+..|.++|-+++ |++++++.+..
T Consensus 153 ~~~~i~l~~~r~~L~~rI~~Rv~~Ml~~GlieEv~~L~~~~~~~~~~ 199 (253)
T pfam01715 153 DIVQIGLARDREVLHERIARRVDDMLESGLVEEVKALYAQGLNEDLP 199 (253)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHH
T ss_conf 77378837988999999999999998768999999999758996448
No 145
>pfam02621 DUF178 Putative periplasminc binding protein (DUF178). This family of proteins belong to the periplasmic binding protein clan.
Probab=45.62 E-value=22 Score=15.87 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=21.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99855566898898864310322110
Q gi|254781112|r 81 NLKVEFFETAVSGLITGLDTNRYDVL 106 (274)
Q Consensus 81 g~~~~~~~~~~~~~~~~l~~g~~D~~ 106 (274)
+.+++++.-+...+-..+.+|++|+.
T Consensus 24 ~~~~~~~~~~P~~Ln~~l~~g~lDv~ 49 (248)
T pfam02621 24 GLDFELVLADPETLNRLLLEGELDVA 49 (248)
T ss_pred CCCEEEEECCHHHHHHHHHCCCCCEE
T ss_conf 89759986899999999986999887
No 146
>PRK04792 tolB translocation protein TolB; Provisional
Probab=45.11 E-value=9.1 Score=18.23 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCH
Q ss_conf 58999628998724870469984889885216789976299855566898
Q gi|254781112|r 42 ALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAV 91 (274)
Q Consensus 42 ~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~ 91 (274)
.+.||+ +||.+. +.+. +..|+.+-|...|...=.|.+++.
T Consensus 35 ~~PIAV----~pF~~~---g~~~---~~~~i~~II~~DL~rSG~F~~l~~ 74 (450)
T PRK04792 35 ARPIAI----VPFKWE---GEGK---LPTDISAVIASDLQRSGKFSPVPT 74 (450)
T ss_pred CCCEEE----ECCCCC---CCCC---HHHHHHHHHHHHHHHCCCCEECCH
T ss_conf 425499----375456---8743---257999999988760878552596
No 147
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=44.63 E-value=23 Score=15.78 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=28.3
Q ss_pred EEEE-CCCHHHHHHHHHHHHHHHHCC---HHHHHHHHHCC
Q ss_conf 9981-899899999999999999798---59999987678
Q gi|254781112|r 227 FMMR-KGNNKLTRSINEILCAIHLDG---TYKKIFDRYFD 262 (274)
Q Consensus 227 ~~~~-k~~~~L~~~in~~l~~l~~~G---~~~~I~~kw~g 262 (274)
+++. .+...|...|++.+.+|.++| |+++||+||-.
T Consensus 190 ~~l~~~~~e~L~~RI~~R~~~Ml~sGl~~Evk~Ly~~~~~ 229 (307)
T TIGR00174 190 IGLAPLEREALHERIEQRVHEMLESGLLAEVKGLYAKYDK 229 (307)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7630058645677899999999986389999999851755
No 148
>PRK05211 consensus
Probab=43.23 E-value=19 Score=16.27 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=24.9
Q ss_pred EEEEEEHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCCCCCCH
Q ss_conf 9885216789976299855566--8988988643103221100
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFE--TAVSGLITGLDTNRYDVLV 107 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~--~~~~~~~~~l~~g~~D~~~ 107 (274)
..+.++++.+++...+++++=- .+-+.+...+..|-=-++.
T Consensus 51 ~~n~~~I~~i~~~~~~Pl~vGGGIrs~~~i~~ll~~GadkVii 93 (248)
T PRK05211 51 VVDKSWVSRVAEVIDIPFCVAGGIKSVEDAREILSFGADKISI 93 (248)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 2149999999976798589627801389999999879988998
No 149
>PRK05137 tolB translocation protein TolB; Provisional
Probab=41.05 E-value=10 Score=17.88 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=12.7
Q ss_pred EEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 98852167899762998555668
Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFET 89 (274)
Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~~ 89 (274)
.+..|+.+.|...|...=.|.++
T Consensus 54 ~l~~~i~~II~~DL~~SG~F~~l 76 (437)
T PRK05137 54 ELGADIAQVIAADLKRSGLFAPI 76 (437)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEC
T ss_conf 35688999999778638895564
No 150
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=39.16 E-value=28 Score=15.25 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 957999999999999999999
Q gi|254781112|r 1 MRRLLRDLRKIFFSKYLFFAP 21 (274)
Q Consensus 1 m~~~~~~mk~~~~~~~l~~~~ 21 (274)
|||+|+.+-+.+....+++.+
T Consensus 1 mkrl~~~L~~ll~v~~L~lg~ 21 (144)
T PRK02515 1 MKRLLSWLVRLLVVLSLLLGL 21 (144)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
T ss_conf 917999999999999999998
No 151
>TIGR00971 3a0106s03 sulfate ABC transporter, sulfate-binding protein; InterPro: IPR005669 Thiosulphate-binding proteins (gene cysP) specifically binds thiosulphate and are involved in the transport systems for this nutrients , . There are two conserved regions in the protein, one located in the N-terminal region and the other in the central part of these proteins. The second pattern includes two adjacent amino acids (Ser-Gly) that, in sbp, are known to be essential for sulphate binding . ; GO: 0015419 sulfate transmembrane-transporting ATPase activity, 0008272 sulfate transport, 0030288 outer membrane-bounded periplasmic space.
Probab=38.77 E-value=28 Score=15.21 Aligned_cols=139 Identities=14% Similarity=0.154 Sum_probs=79.6
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCC--CCCEEEEC----CCHHHHHHHCCC---------------------CCCEE
Q ss_conf 333222222222111222-211111233--43202310----101223320134---------------------54213
Q gi|254781112|r 122 SIPYIAHRVLLVVRSDQQ-DIRSFKDLT--DKTVAQIL----GTDLSRFAKELK---------------------SHLVF 173 (274)
Q Consensus 122 s~p~~~~~~~~~~~~~~~-~~~~~~dL~--g~~V~~~~----g~~~~~~l~~~~---------------------~~~~~ 173 (274)
|.||+. +.+|++|+++| .|.+|+||- |.+|..+. |..=..||..++ .++..
T Consensus 103 S~Py~S-T~~FLVRKGNPK~I~DWnDL~~~~v~~I~PNPK~SG~AR~~YLaAWG~A~~~~~~D~aK~~~F~~~l~KNvEV 181 (320)
T TIGR00971 103 SAPYTS-TIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARYNYLAAWGYALHADNGDKAKAEQFVKALLKNVEV 181 (320)
T ss_pred CCCCCE-EEEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 886201-3355675479896465134633587586078898641578999987667513787624589999998501033
Q ss_pred ECCHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCC-CCCCCCEEEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf 368557--777554432100366558999999845876673262367-76877079998189-98999999999999997
Q gi|254781112|r 174 SHNFEQ--SLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADR-MKDNSAVAFMMRKG-NNKLTRSINEILCAIHL 249 (274)
Q Consensus 174 ~~~~~~--~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~ 249 (274)
.++-.. .-.-+..|-.|+.+.-+..+....++...+...+.++.. ....-+.++ |-|. ...=.+.+-++--+.-=
T Consensus 182 lD~G~RGaT~TF~ERG~GDVLI~~E~E~~~~~~~~~~~~FE~V~P~~~ILAE~~V~~-VDK~V~~~~T~~~A~AYL~yLY 260 (320)
T TIGR00971 182 LDSGARGATNTFVERGLGDVLIAFENEALLIRKELEKDKFEIVIPSESILAEPTVSV-VDKVVEKKGTKKVAEAYLKYLY 260 (320)
T ss_pred EECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEE-EECCCCCCCHHHHHHHHHHHHC
T ss_conf 206888652101110633001345788999999633487268647743213565035-7433032345899999997404
Q ss_pred CCHHHHHHHHHCC
Q ss_conf 9859999987678
Q gi|254781112|r 250 DGTYKKIFDRYFD 262 (274)
Q Consensus 250 ~G~~~~I~~kw~g 262 (274)
|.+-+.|..+||=
T Consensus 261 SP~~Q~I~~~~yY 273 (320)
T TIGR00971 261 SPEGQEIIAKNYY 273 (320)
T ss_pred CCCHHHHHHHCCC
T ss_conf 9413567654267
No 152
>PRK10743 heat shock protein IbpA; Provisional
Probab=37.90 E-value=11 Score=17.84 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=20.2
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCC
Q ss_conf 28998724870469984889885216789976299855
Q gi|254781112|r 48 DGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVE 85 (274)
Q Consensus 48 ~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~ 85 (274)
..+||||+....|+. .|.++++-+=+.+-.++++
T Consensus 31 ~~~YPpyNI~k~~e~----~y~Ie~AvAGf~k~di~I~ 64 (137)
T PRK10743 31 NGGYPPYNVELVDEN----HYRIAIAVAGFAESELEIT 64 (137)
T ss_pred CCCCCCCEEEEECCC----EEEEEEEECCCCHHHEEEE
T ss_conf 789999508990698----3999999778786893899
No 153
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR011858 This enzyme acts in the biosynthesis of histidine and has been characterised in Saccharomyces cerevisiae and Arabidopsis where it complements the Escherichia coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=37.39 E-value=13 Score=17.20 Aligned_cols=55 Identities=13% Similarity=-0.002 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHCCC---C----CCEEEC------CHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 21111123343202310101223320134---5----421336------855777755443210036655899
Q gi|254781112|r 140 DIRSFKDLTDKTVAQILGTDLSRFAKELK---S----HLVFSH------NFEQSLQLLLSKRTDATMIPDIPF 199 (274)
Q Consensus 140 ~~~~~~dL~g~~V~~~~g~~~~~~l~~~~---~----~~~~~~------~~~~~~~~l~~grvD~~~~~~~~~ 199 (274)
..=+-+|..|+.-|+ .|++...++ . ..+.|. +.-+.+..|.+||||..++..+-+
T Consensus 191 FLiHAADVEGl~~GI-----DE~LV~~LgEw~p~~~~ip~tYAGGakS~~DL~~v~~lSkGKVDLT~GSaLDI 258 (274)
T TIGR02129 191 FLIHAADVEGLCKGI-----DEELVKKLGEWSPVYDDIPVTYAGGAKSIDDLDLVKELSKGKVDLTIGSALDI 258 (274)
T ss_pred CEEEEEEECCCCCCC-----CHHHHHHHCCCCCCCCCCCEEEECCCEEHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 125544422334687-----57999984345888752431772786556568999985088088974331322
No 154
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=36.96 E-value=11 Score=17.79 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCH
Q ss_conf 855777755443210036655
Q gi|254781112|r 176 NFEQSLQLLLSKRTDATMIPD 196 (274)
Q Consensus 176 ~~~~~~~~l~~grvD~~~~~~ 196 (274)
..+....++..|++||++...
T Consensus 268 ~~eHf~EAF~~gkADAaLaAS 288 (312)
T TIGR00735 268 KPEHFYEAFTKGKADAALAAS 288 (312)
T ss_pred CCCCHHHHHHCCCHHHHHHHH
T ss_conf 853003222100034534435
No 155
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=36.81 E-value=22 Score=15.86 Aligned_cols=34 Identities=9% Similarity=0.260 Sum_probs=19.1
Q ss_pred HHHCCCCCCCCCC---CHHHHHHHHHCCCCCCCHHCC
Q ss_conf 9762998555668---988988643103221100003
Q gi|254781112|r 77 AHRLNLKVEFFET---AVSGLITGLDTNRYDVLVNVA 110 (274)
Q Consensus 77 ~~~lg~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 110 (274)
.+..|++++.+.- ....+++.+++|++|++.+.+
T Consensus 39 L~~~Gi~~~~v~k~~e~~p~i~d~i~~~~i~lVINt~ 75 (110)
T cd01424 39 LQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTP 75 (110)
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECC
T ss_conf 9864986403300567997689999779358999778
No 156
>PRK11139 DNA-binding transcriptional activator GcvA; Provisional
Probab=35.58 E-value=32 Score=14.90 Aligned_cols=185 Identities=10% Similarity=0.028 Sum_probs=94.4
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
..+.|+|++...+.-. | ....+....++. ++++++...+. ..++..+++|++......+. .
T Consensus 92 ~~g~l~I~~~~~~~~~-~------------l~p~l~~f~~~~P~i~v~l~~~~~---~~~l~~~~~Diai~~~~~~~--~ 153 (295)
T PRK11139 92 AKGALTVSLLPSFAIK-W------------LVPRLSSFNEAHPDIDVRLQAVDR---LEDFLRDDVDVAIRYGRGNW--P 153 (295)
T ss_pred CCCEEEEEEECCHHHH-H------------HHHHHHHHHHCCCCEEEEEEECCC---HHHHHCCCCEEEEEEECCCC--C
T ss_conf 7873999996322777-6------------334666666108858999996241---66663347438999723776--7
Q ss_pred HHCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCEEE-ECCCHHHHHHHCCC-----C-CCEEECCHHHHHHHHHH
Q ss_conf 200233322222222211122----2211111233432023-10101223320134-----5-42133685577775544
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQ----QDIRSFKDLTDKTVAQ-ILGTDLSRFAKELK-----S-HLVFSHNFEQSLQLLLS 186 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~----~~~~~~~dL~g~~V~~-~~g~~~~~~l~~~~-----~-~~~~~~~~~~~~~~l~~ 186 (274)
. ..+.++......+++..+. ....+++||++..+-. ..+..+..+.+..+ . ....+++....++++.+
T Consensus 154 ~-l~~~~l~~~~~~~vasp~~~~~~~~~~~~~dL~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (295)
T PRK11139 154 G-LRVEKLLDEYLFPVCSPALLNGGKPLKTPEDLARHTLLHDDSREDWRAWFRAAGLNDINVQQGPIFSHSSMALQAAIH 232 (295)
T ss_pred C-EEEEEEECCEEEEEECHHHHHHCCCCCCHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHH
T ss_conf 6-279994044699998879996479999999981898796369621588998569865467875288789999999995
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEEEECCC---HHHHHHHHHHHHHH
Q ss_conf 321003665589999998458766732623-67768770799981899---89999999999999
Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFMMRKGN---NKLTRSINEILCAI 247 (274)
Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~---~~L~~~in~~l~~l 247 (274)
|.. ..+.+...+...+.+- ..+.+. +....+.++++..+++. +..+..++.-++++
T Consensus 233 G~G-ia~lp~~~v~~~l~~G----~Lv~~l~~~~~~~~~~~lv~~~~~~~~p~v~~F~~~L~~~~ 292 (295)
T PRK11139 233 GQG-VALGRRVLAQPEIEAG----RLVCPFDIVLPSKNAFYLVCPPSQAELPKVAAFRQWLLAEA 292 (295)
T ss_pred CCE-EEECCHHHHHHHHHCC----CEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 992-9977799999998789----97998986667887599998089878989999999999985
No 157
>TIGR01980 sufB FeS assembly protein SufB; InterPro: IPR010231 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufB, which is part of the SUF system and forms a complex with SufBCD.; GO: 0005515 protein binding, 0016226 iron-sulfur cluster assembly.
Probab=35.08 E-value=25 Score=15.57 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=5.1
Q ss_pred HHHCCCCCHHHH
Q ss_conf 210036655899
Q gi|254781112|r 188 RTDATMIPDIPF 199 (274)
Q Consensus 188 rvD~~~~~~~~~ 199 (274)
+||+.++|+...
T Consensus 387 ~CD~Ll~Dd~S~ 398 (469)
T TIGR01980 387 QCDSLLLDDESA 398 (469)
T ss_pred EEEEEEECCCCC
T ss_conf 566556578422
No 158
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=34.31 E-value=11 Score=17.76 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=7.1
Q ss_pred HHHHHHHHHCCCCCCCHH
Q ss_conf 889886431032211000
Q gi|254781112|r 91 VSGLITGLDTNRYDVLVN 108 (274)
Q Consensus 91 ~~~~~~~l~~g~~D~~~~ 108 (274)
..+.++.+..|++|++.|
T Consensus 401 ~~~~~~~F~~GE~dVliG 418 (1843)
T TIGR01054 401 PKEDLEKFAEGEIDVLIG 418 (1843)
T ss_pred CCCCHHHHHCCCEEEEEE
T ss_conf 732034663485136877
No 159
>PRK04922 tolB translocation protein TolB; Provisional
Probab=34.23 E-value=26 Score=15.40 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 5899962899872487046998488988521678997629985556689
Q gi|254781112|r 42 ALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETA 90 (274)
Q Consensus 42 ~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~ 90 (274)
.+.|++ +||.+. +.... ...|+.+.|...|...=.|.+++
T Consensus 38 ~~pIAV----~pF~~~--~~~~~---~~~~i~~II~~DL~~SG~F~~l~ 77 (439)
T PRK04922 38 ATPIAV----VPMPYQ--GSGTA---PQTDVSAVVSADLDRSGQFRTLP 77 (439)
T ss_pred CEEEEE----ECCCCC--CCCCC---HHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 050699----375657--87655---03649999986577272744159
No 160
>TIGR00623 sula cell division inhibitor SulA; InterPro: IPR004596 All proteins in this family for which the functions are known are cell division inhibitors. In Escherichia coli, SulA is one of the SOS regulated genes. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. The expression of SulA is repressed by LexA. The N-terminus of SulA may be involved in recognising the cell division apparatus.; GO: 0009432 SOS response, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=33.60 E-value=27 Score=15.35 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=33.6
Q ss_pred HHHHHHHHHCCCCCCCHHCC---CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 88988643103221100003---675675420023332222222221112222111112334320
Q gi|254781112|r 91 VSGLITGLDTNRYDVLVNVA---ITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTV 152 (274)
Q Consensus 91 ~~~~~~~l~~g~~D~~~~~~---~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V 152 (274)
-+.++.+|++|++.++.|.- -|+|-..... ...-.-...+|+.|.-...-..-..+.|.+|
T Consensus 99 ~E~M~rAL~TGNYsVViGWl~~eLTEee~~~L~-~AA~~G~a~GFIMRP~r~~s~~~r~~SgLKI 162 (168)
T TIGR00623 99 VESMIRALRTGNYSVVIGWLTDELTEEEHAKLV-EAAEEGNAMGFIMRPVRAISQPRRQLSGLKI 162 (168)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHCCCCCEEEECCCHHCCCCCCCCCCCEE
T ss_conf 999999971499348871466304767899999-9985389712533780210345556441021
No 161
>pfam10991 DUF2815 Protein of unknown function (DUF2815). This is a phage related family of proteins with unknown function.
Probab=33.55 E-value=34 Score=14.70 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=7.9
Q ss_pred CEEEEECCCCCCEEEE
Q ss_conf 5899962899872487
Q gi|254781112|r 42 ALRVGTDGIYPPHSFH 57 (274)
Q Consensus 42 ~l~v~~~~~~pP~~~~ 57 (274)
.+|.+--.-|-|....
T Consensus 7 ~VRlSy~~l~ep~~~~ 22 (181)
T pfam10991 7 NVRLSYANLFEPKSIE 22 (181)
T ss_pred CEEEECCCCCCCCCCC
T ss_conf 4889843104664344
No 162
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=32.94 E-value=24 Score=15.62 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=18.3
Q ss_pred HHHCCCCCCCCCCC-------HHHHHHHHHCCCCCCCHHCC
Q ss_conf 97629985556689-------88988643103221100003
Q gi|254781112|r 77 AHRLNLKVEFFETA-------VSGLITGLDTNRYDVLVNVA 110 (274)
Q Consensus 77 ~~~lg~~~~~~~~~-------~~~~~~~l~~g~~D~~~~~~ 110 (274)
.+..|++++.+... -...++.+++|++|++.+++
T Consensus 39 l~~~Gi~~~~v~k~~e~~~~~~p~i~d~i~~g~i~lVINtp 79 (116)
T cd01423 39 LLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLP 79 (116)
T ss_pred HHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCCEEEEEECC
T ss_conf 99869965798786246789996699999769868999888
No 163
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=32.80 E-value=17 Score=16.51 Aligned_cols=43 Identities=12% Similarity=-0.020 Sum_probs=28.6
Q ss_pred EEECCCHHHHHHHCCCCCCEEEC-CHHHHHHHHHHHHHHCCCCCH
Q ss_conf 23101012233201345421336-855777755443210036655
Q gi|254781112|r 153 AQILGTDLSRFAKELKSHLVFSH-NFEQSLQLLLSKRTDATMIPD 196 (274)
Q Consensus 153 ~~~~g~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~grvD~~~~~~ 196 (274)
|+.+.+..+ ++++.+.++.+-. +.++.+.+...|++|=+++..
T Consensus 259 GITR~svi~-la~~~G~~V~Er~i~~~el~~a~~~g~l~E~F~tG 302 (357)
T PRK13357 259 GITRDSLLQ-LAKDLGLTVEERDVSIDEWQADAASGEFTEAFACG 302 (357)
T ss_pred CHHHHHHHH-HHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECC
T ss_conf 744999999-99986981799965999999775459737999635
No 164
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=32.78 E-value=35 Score=14.62 Aligned_cols=41 Identities=17% Similarity=0.381 Sum_probs=29.4
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCHH---------HHHHHHHCCC
Q ss_conf 7079998189989999999999999979859---------9999876788
Q gi|254781112|r 223 SAVAFMMRKGNNKLTRSINEILCAIHLDGTY---------KKIFDRYFDK 263 (274)
Q Consensus 223 ~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~---------~~I~~kw~g~ 263 (274)
+.+.+.|+.+=.+|...+.++..-++..|.+ ++|++++|-.
T Consensus 206 QALRI~VN~EL~~L~~~L~~~~~~L~~gGrl~vISfHSLEDRiVK~ff~~ 255 (309)
T PRK00050 206 QAIRIEVNDELEELEEALEAALEVLAPGGRLSVISFHSLEDRIVKRFFKE 255 (309)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHH
T ss_conf 99999970269999999999999985075399998433257899999997
No 165
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=32.49 E-value=29 Score=15.12 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=16.3
Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 216789976299855566898898
Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGL 94 (274)
Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~ 94 (274)
+.+..+-++.|++|+++..+....
T Consensus 58 ~~~~kfek~~gi~V~i~~~~~~d~ 81 (420)
T COG2182 58 EAAAKFEKETGIKVKIVEEDYDDL 81 (420)
T ss_pred HHHHHHHHHHCCEEEEEECCCCCH
T ss_conf 999999998797589994675048
No 166
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=29.57 E-value=36 Score=14.57 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=16.4
Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 320134542133685577775544321003665
Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274)
+++..+.++..+.+.+++++.+...+.|.++.|
T Consensus 17 ~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D 49 (111)
T pfam00072 17 LLEKEGYVVAEADDGEEALELLKEKRPDLILLD 49 (111)
T ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 999889999998999999999984799899995
No 167
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=29.45 E-value=40 Score=14.27 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=39.4
Q ss_pred EHHHHHHHCCCCCCCCCCCHH----HHHHHHHCCCCCC--CHH--CCCCHHHHHHHCCCCCCCCCCCCC-CCCC-CCCCC
Q ss_conf 167899762998555668988----9886431032211--000--036756754200233322222222-2111-22221
Q gi|254781112|r 72 LIKEVAHRLNLKVEFFETAVS----GLITGLDTNRYDV--LVN--VAITPERQKKYDFSIPYIAHRVLL-VVRS-DQQDI 141 (274)
Q Consensus 72 l~~~i~~~lg~~~~~~~~~~~----~~~~~l~~g~~D~--~~~--~~~t~eR~~~~~fs~p~~~~~~~~-~~~~-~~~~~ 141 (274)
++..+++.++-++- .+||+ +....+.+-+-|. +.| .+.++.-++... +..+ +.|. |++++
T Consensus 43 lA~~iaellNA~Vl--ttpwg~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lk--------s~GitV~RigG~nR~ 112 (337)
T COG2247 43 LALPIAELLNAPVL--TTPWGIYNESVLDEIIELNPDLVLIIGGPIAVSPNYENALK--------SLGITVKRIGGANRY 112 (337)
T ss_pred HHHHHHHHHCCEEE--ECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH--------HCCCEEEEECCCCHH
T ss_conf 75679997589057--26754213999999996198659997898757865899998--------579579993376268
Q ss_pred CCC------------CCCCCCCEEEECCCHHHH
Q ss_conf 111------------123343202310101223
Q gi|254781112|r 142 RSF------------KDLTDKTVAQILGTDLSR 162 (274)
Q Consensus 142 ~~~------------~dL~g~~V~~~~g~~~~~ 162 (274)
.+- .-+++-+++++.|+.|..
T Consensus 113 ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~ 145 (337)
T COG2247 113 ETAEKVAKFFREDYPNAFKNVKVVVVYGWDYAD 145 (337)
T ss_pred HHHHHHHHHHHHHCHHHHCCEEEEEEECCCCHH
T ss_conf 999999999976442331581799996602277
No 168
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=29.35 E-value=19 Score=16.29 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=19.4
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCC
Q ss_conf 28998724870469984889885216789976299855
Q gi|254781112|r 48 DGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVE 85 (274)
Q Consensus 48 ~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~ 85 (274)
..+||||+....|++ .|.++++-+=+.+-.++++
T Consensus 29 ~~~yPpYNI~k~~e~----~y~IeiAvaGf~k~di~I~ 62 (142)
T PRK11597 29 SQSFPPYNIEKSDDN----HYRITLALAGFRQEDLDIQ 62 (142)
T ss_pred CCCCCCCEEEEECCC----EEEEEEEECCCCHHHEEEE
T ss_conf 789999669991797----2999999688775778999
No 169
>TIGR00004 TIGR00004 endoribonuclease L-PSP, putative; InterPro: IPR006056 This family includes proteins encoded by the yabJ gene from Bacillus subtilis that is required for adenine-mediated repression of purine biosynthetic genes in vivo and codes for an acid-soluble, 14-kDa protein. The structure of this protein has been solved and the protein is found to form a homotrimer. The trimer has a deep cleft that is a probably ligand binding site and possibly forms an enzymatic active site. However the ligand and reaction are unknown..
Probab=29.23 E-value=30 Score=15.01 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=14.8
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 85999998767888775689877
Q gi|254781112|r 251 GTYKKIFDRYFDKNIISSVPGCS 273 (274)
Q Consensus 251 G~~~~I~~kw~g~d~~~~~~~~~ 273 (274)
.++++||.+||++.-+.+-||-|
T Consensus 86 A~vNevY~~YF~~~~V~~~PARs 108 (129)
T TIGR00004 86 AEVNEVYGQYFDEHSVEPYPARS 108 (129)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 89998988754877778777311
No 170
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=29.09 E-value=32 Score=14.84 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=27.7
Q ss_pred CCCCEEEEEEEEHHH-HH-HHC---CCCCCCCCCCHHHHHHHH---HCCCCCCC
Q ss_conf 998488988521678-99-762---998555668988988643---10322110
Q gi|254781112|r 61 GRGELTGFDIDLIKE-VA-HRL---NLKVEFFETAVSGLITGL---DTNRYDVL 106 (274)
Q Consensus 61 ~~g~~~G~~~dl~~~-i~-~~l---g~~~~~~~~~~~~~~~~l---~~g~~D~~ 106 (274)
..|.+.|+|-|---. .+ +.+ +-.+.++...|..+-..+ .-+++|.+
T Consensus 44 ~~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF~~l~~~l~~~~~~~vdGi 97 (310)
T pfam01795 44 EEGRLIGIDRDPQAIANAKERLKPFKGRVTLIHSNFANLFAYLKELGVGKVDGI 97 (310)
T ss_pred CCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCEE
T ss_conf 999799998989999999985302588589992537579999987598766789
No 171
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=29.01 E-value=36 Score=14.58 Aligned_cols=149 Identities=12% Similarity=0.134 Sum_probs=70.9
Q ss_pred CCCCCCCHHHHHHHHHCCCCCC-CHHCCCCHHHHHH-HCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHH
Q ss_conf 5556689889886431032211-0000367567542-002-333222222222111222211111233432023101012
Q gi|254781112|r 84 VEFFETAVSGLITGLDTNRYDV-LVNVAITPERQKK-YDF-SIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDL 160 (274)
Q Consensus 84 ~~~~~~~~~~~~~~l~~g~~D~-~~~~~~t~eR~~~-~~f-s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~ 160 (274)
+++.......+-..+..|.+|+ +.|.-+-.|.... +.. ..+|......+.+++ ++..++||+.-.-...
T Consensus 45 i~~~~vR~~DIp~yV~~G~~DiGIvG~D~l~E~~~~v~~lldL~~G~crl~vA~~~--------~~~~~~rIATkYp~it 116 (204)
T PRK13584 45 IECILVKGSDVPIYVEQGMADIGIVGSDILDERQYNVNNLLNMPFGACHFAVAAKP--------ETTNYRKIATSYVHTA 116 (204)
T ss_pred EEEEEECHHHHHHHHHCCCCCEEEECCHHHHCCCCCEEEEECCCCCCEEEEEEECC--------CCCCCCEEEEEHHHHH
T ss_conf 79999886888999974986577526420222689814765267674789999667--------7567878987257799
Q ss_pred HHHHHCCCCC--CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCH-HHH
Q ss_conf 2332013454--2133685577775544321003665589999998458766732623677687707999818998-999
Q gi|254781112|r 161 SRFAKELKSH--LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNN-KLT 237 (274)
Q Consensus 161 ~~~l~~~~~~--~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~L~ 237 (274)
.+|.++.+.+ ++......+. +-..|-.|++ +|-...-..++.+.. .+..... ...-.+..++..- .=.
T Consensus 117 ~~~f~~~gi~~eii~l~GsvEl--AP~~GlAD~I-vDiveTG~TLk~NgL-----~~~e~I~-~s~a~LI~N~~s~~~k~ 187 (204)
T PRK13584 117 ETYFKSKGIDVELIKLNGSVEL--ACVVDMVDGI-VDIVQTGTTLKANGL-----VEKQHIS-DINARLITNKAAYFKKS 187 (204)
T ss_pred HHHHHHCCCCEEEEEEEEEEEE--CCCCCCCCEE-EEEECCCHHHHHCCC-----EEEEEEE-EEEEEEEECHHHHHHHH
T ss_conf 9999970995289997536853--6788875589-998377588998799-----8868998-65789999889999889
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999997
Q gi|254781112|r 238 RSINEILCAIHL 249 (274)
Q Consensus 238 ~~in~~l~~l~~ 249 (274)
+.|++.+..++.
T Consensus 188 ~~I~~li~~l~~ 199 (204)
T PRK13584 188 QLIEQFIRSLEV 199 (204)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 172
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family; InterPro: IPR011852 This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (IPR004682 from INTERPRO) and SmoM (IPR004682 from INTERPRO) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterised but, besides C4 dicarboxylates, may include mannitol and other compounds ..
Probab=28.68 E-value=25 Score=15.51 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=64.9
Q ss_pred EEHHHHHHHCC--CCCCCCCCC-HHHHHHHHHCCCCCCCHHC----CCCHHHHHHHCC---------CCCCCCCCCCCCC
Q ss_conf 21678997629--985556689-8898864310322110000----367567542002---------3332222222221
Q gi|254781112|r 71 DLIKEVAHRLN--LKVEFFETA-VSGLITGLDTNRYDVLVNV----AITPERQKKYDF---------SIPYIAHRVLLVV 134 (274)
Q Consensus 71 dl~~~i~~~lg--~~~~~~~~~-~~~~~~~l~~g~~D~~~~~----~~t~eR~~~~~f---------s~p~~~~~~~~~~ 134 (274)
.+.+.+....+ ..+...... .......+..|+.+..... .+..+....+.+ ....+.....+++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~s~~n~~~~~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (319)
T TIGR02122 44 AIAQLINKALGKVLRVSAQSTGGSVENVNLLEAGEAELAIVQSDVAYYAYEGIGEFEFKGPVEKLRALASLYPEYIQIVV 123 (319)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCEEEE
T ss_conf 45555421013220223211454112333333213455554433344432101110012333200000012454210232
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCHHH-----HHHHCCC-----CCCEEECCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 112222111112334320231010122-----3320134-----5421336855777755443210036655899
Q gi|254781112|r 135 RSDQQDIRSFKDLTDKTVAQILGTDLS-----RFAKELK-----SHLVFSHNFEQSLQLLLSKRTDATMIPDIPF 199 (274)
Q Consensus 135 ~~~~~~~~~~~dL~g~~V~~~~g~~~~-----~~l~~~~-----~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~ 199 (274)
++++ .++++.||+|+++.+....... ..++..+ .....+....+....+.++..|+.+......
T Consensus 124 ~~~~-~~~~~~dl~gk~~~~~~~~sg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 197 (319)
T TIGR02122 124 RKDS-GIKTVADLKGKRVAVGAPGSGTELNARAVLKAAGLTYDDIKEAEYLGYAEAADALKDGKIDAAFITAGLP 197 (319)
T ss_pred ECCC-CCCCHHHHCCCEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCCCEEEECCCCC
T ss_conf 0113-4310122035300024666430134778876504651120011102310001343202310001013444
No 173
>pfam02642 consensus
Probab=27.46 E-value=43 Score=14.06 Aligned_cols=149 Identities=16% Similarity=0.096 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHCCCCCCCH-HCCCCHH-HHHHHCCC-C-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCH-HH
Q ss_conf 68988988643103221100-0036756-75420023-3-3222-22222211122221111123343202310101-22
Q gi|254781112|r 88 ETAVSGLITGLDTNRYDVLV-NVAITPE-RQKKYDFS-I-PYIA-HRVLLVVRSDQQDIRSFKDLTDKTVAQILGTD-LS 161 (274)
Q Consensus 88 ~~~~~~~~~~l~~g~~D~~~-~~~~t~e-R~~~~~fs-~-p~~~-~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~-~~ 161 (274)
..+=+.+-....+|++|+.. ++.--+. ++++...+ . .+-. .+..++.++ ..++++++|+++--.+ ..
T Consensus 34 l~DIetLN~~A~~g~~dvskiS~~ayp~i~d~Y~lL~~G~alG~G~GPlvva~~-------~~~l~~~~iAvPG~~TTA~ 106 (259)
T pfam02642 34 IADIETLNREALKNRYEVSAISAHLYPLIADKYALLPVGTSLGYGYGPIVVSKK-------EVSLKLKRLATPGEHTTAH 106 (259)
T ss_pred EECHHHHHHHHHCCCCCEEEECHHHHHHHHHCEEEEECHHHCCCCCCCEEEECC-------CCCCCCCEEECCCHHHHHH
T ss_conf 527999999998189997887597788686068875332230488687478547-------7777899897877367999
Q ss_pred HHHHC--CCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC----CCCCCCCEE-EEEECC-C
Q ss_conf 33201--345421336855777755443210036655899999984587667326236----776877079-998189-9
Q gi|254781112|r 162 RFAKE--LKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD----RMKDNSAVA-FMMRKG-N 233 (274)
Q Consensus 162 ~~l~~--~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~k~-~ 233 (274)
-..+- ...+.+. -..++.+.++.+|++|+-+.=...-.-|. + +......... ...-+.|+| ++++|+ .
T Consensus 107 lL~~l~~~~~~~v~-~~FdeI~~aV~~G~vDaGviIHE~rftY~-~--gL~~~~DLG~wW~~~tglPlPLG~ivirr~Lg 182 (259)
T pfam02642 107 LLCKLYYPDAELVP-MPFDRIIQAVLEGKVDAGALIHEERFSYH-D--GLKVVKDLGDLWKEKVDLPLPLGCNAIRKDVP 182 (259)
T ss_pred HHHHHHCCCCEEEE-EEHHHHHHHHHCCCCCCEEEEEHHHHHHH-C--CCEEEEEHHHHHHHHCCCCCCCHHHHHHHCCC
T ss_conf 99998558875999-56899899997599871079763142140-3--98787358899877409987634678661079
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999999999
Q gi|254781112|r 234 NKLTRSINEILCAI 247 (274)
Q Consensus 234 ~~L~~~in~~l~~l 247 (274)
.+.+..+++++.+=
T Consensus 183 ~~~~~~~~~~lr~S 196 (259)
T pfam02642 183 LEVVILLKRALRES 196 (259)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 174
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=27.44 E-value=43 Score=14.06 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=18.4
Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 3201345421336855777755443210036655
Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274)
.+++.+.++..+.+..++++.+.+++.|.++.|-
T Consensus 16 ~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~ 49 (113)
T cd00156 16 LLEKEGYEVVEAEDGEEALALLAEEKPDLILLDI 49 (113)
T ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC
T ss_conf 9998899999989999999998757999999779
No 175
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=27.30 E-value=18 Score=16.37 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 2333222222222111222-211111233
Q gi|254781112|r 121 FSIPYIAHRVLLVVRSDQQ-DIRSFKDLT 148 (274)
Q Consensus 121 fs~p~~~~~~~~~~~~~~~-~~~~~~dL~ 148 (274)
=|.|||.... +++|++++ .|++|+||.
T Consensus 119 nsSPfYS~~a-FLVR~GNPK~IkdW~DLv 146 (341)
T COG4150 119 NSSPFYSTMA-FLVRKGNPKNIKDWDDLV 146 (341)
T ss_pred CCCCCCCCHH-HHHHCCCCCCCCCHHHHH
T ss_conf 8896432327-775368966676577775
No 176
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=26.86 E-value=44 Score=13.99 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=35.2
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHH---------HHHHHHHCCCCC
Q ss_conf 6877079998189989999999999999979859---------999987678887
Q gi|254781112|r 220 KDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTY---------KKIFDRYFDKNI 265 (274)
Q Consensus 220 ~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~---------~~I~~kw~g~d~ 265 (274)
..-+.+.+.|+.+-.+|...+..++..++..|++ ++|.+++|-+..
T Consensus 207 r~FQAiRI~VNdEL~~L~~~L~~a~~~L~~~GRl~VIsFHSLEDRiVK~ff~~~s 261 (314)
T COG0275 207 RTFQAIRIYVNDELEELEEALEAALDLLKPGGRLAVISFHSLEDRIVKNFFKELS 261 (314)
T ss_pred HHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 6563410000567999999999999961889679999953428999999999840
No 177
>KOG0623 consensus
Probab=26.37 E-value=44 Score=14.01 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=11.7
Q ss_pred HHHHHHHHHCCCCCCCCC
Q ss_conf 599999876788877568
Q gi|254781112|r 252 TYKKIFDRYFDKNIISSV 269 (274)
Q Consensus 252 ~~~~I~~kw~g~d~~~~~ 269 (274)
.++.|.+-|=.+-|+.|+
T Consensus 378 ~iEtISkaYGnQAVViSv 395 (541)
T KOG0623 378 SIETISKAYGNQAVVISV 395 (541)
T ss_pred HHHHHHHHHCCEEEEEEE
T ss_conf 189998872770499996
No 178
>PRK11289 ampC beta-lactamase; Provisional
Probab=26.35 E-value=45 Score=13.93 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 99999999999999999999999998417887
Q gi|254781112|r 5 LRDLRKIFFSKYLFFAPFFILFSYYFVIYPFR 36 (274)
Q Consensus 5 ~~~mk~~~~~~~l~~~~~~~~~~~~~~~~~~~ 36 (274)
|+-|+|.++..+++...+++..+.+.++.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 32 (387)
T PRK11289 1 MSLMMKSLLAALLLTASISAFAAPAAAATSQQ 32 (387)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 91799999999999999986167655699799
No 179
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=26.02 E-value=34 Score=14.69 Aligned_cols=117 Identities=9% Similarity=0.157 Sum_probs=62.8
Q ss_pred HCCCCCCCCCC-CHHHHHHHHHCCCCCCCH-HC------CCCHHHHHHHCCC------CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62998555668-988988643103221100-00------3675675420023------3322222222211122221111
Q gi|254781112|r 79 RLNLKVEFFET-AVSGLITGLDTNRYDVLV-NV------AITPERQKKYDFS------IPYIAHRVLLVVRSDQQDIRSF 144 (274)
Q Consensus 79 ~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~-~~------~~t~eR~~~~~fs------~p~~~~~~~~~~~~~~~~~~~~ 144 (274)
..+-..+..+. +...+++++.+|++|... .+ ++.+-- +....+ .-.+.....++++.+ .++
T Consensus 22 ~f~~~~~~~p~~ti~evf~ave~g~aD~gVVPIENS~eG~V~~tl-DlL~~~~l~IvgE~~lpI~h~L~~~~~----~~l 96 (279)
T COG0077 22 LFGSGAELLPCSTIEDVFKAVENGEADYGVVPIENSIEGSVNETL-DLLAETDLQIVGEIVLPIHHCLLVKGG----VDL 96 (279)
T ss_pred HCCCCCEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHH-HHHCCCCCEEEEEEEEEEEEEEEECCC----CCH
T ss_conf 610354012479999999999769986699976603884038878-754359868999999877999981688----886
Q ss_pred CCCCCCCEEEE-CCCH-HHHHHHCC--CCCCEEECCHHHHHHHHHH--HHHHCCCCCHHHHHHH
Q ss_conf 12334320231-0101-22332013--4542133685577775544--3210036655899999
Q gi|254781112|r 145 KDLTDKTVAQI-LGTD-LSRFAKEL--KSHLVFSHNFEQSLQLLLS--KRTDATMIPDIPFFNF 202 (274)
Q Consensus 145 ~dL~g~~V~~~-~g~~-~~~~l~~~--~~~~~~~~~~~~~~~~l~~--grvD~~~~~~~~~~~~ 202 (274)
++++ +|-.. .... ..+|++++ +.+++...|..++.+++.. .+..|++++...+..|
T Consensus 97 ~~Ik--~vySHpqalaQc~~~L~~~~p~~~~~~~~STa~Aak~v~~~~~~~~AAIas~~aA~~y 158 (279)
T COG0077 97 EEIK--TVYSHPQALAQCRKFLRAHLPGVEIEYTSSTAEAAKLVAEGPDETVAAIASELAAELY 158 (279)
T ss_pred HHCE--EEEECCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCEEEECCHHHHHHC
T ss_conf 6575--8874728999999999972888369981788999999972898673687698789773
No 180
>TIGR01752 flav_long flavodoxin; InterPro: IPR010086 Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They function as electron transfer agents in a variety of microbial metabolic processes, including nitrogen fixation by nitrogenase , sulphite reduction , and light-dependent NADP+ reduction during photosynthesis . This entry describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in Escherichia coli .; GO: 0010181 FMN binding, 0006118 electron transport.
Probab=25.55 E-value=47 Score=13.84 Aligned_cols=156 Identities=23% Similarity=0.300 Sum_probs=82.6
Q ss_pred CCEEEEEEEEHHHHHHHCC-CC-CCCCCCCHHHHHHHHHCCCCCCC-HHCCCCHHHHHHHCCCCCCCCCCCCCC--CCCC
Q ss_conf 8488988521678997629-98-55566898898864310322110-000367567542002333222222222--1112
Q gi|254781112|r 63 GELTGFDIDLIKEVAHRLN-LK-VEFFETAVSGLITGLDTNRYDVL-VNVAITPERQKKYDFSIPYIAHRVLLV--VRSD 137 (274)
Q Consensus 63 g~~~G~~~dl~~~i~~~lg-~~-~~~~~~~~~~~~~~l~~g~~D~~-~~~~~t~eR~~~~~fs~p~~~~~~~~~--~~~~ 137 (274)
|.-+|.+-.+++.|.+.+| .. +..+.+.-.+.. . -..+|++ .++ +|.. +=+ -+ .+= +...
T Consensus 7 Gt~TG~T~~iAe~I~~~lG~~~~~d~~ni~~~~~~-~--~~~Y~~LIlGt-PTw~------~Ge----Lq-GleaGCes~ 71 (176)
T TIGR01752 7 GTDTGNTEGIAEKIAKELGKESDVDVFNIAKASLE-D--LEAYDILILGT-PTWG------VGE----LQ-GLEAGCESE 71 (176)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH-H--HHCCCCEEEEC-CCCC------CCC----CC-CCCCCCCCC
T ss_conf 45876078999999998188866210132312468-6--63487058744-7666------776----66-654467742
Q ss_pred --CCCCCCCC--CCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCE
Q ss_conf --22211111--23343202310101223320134542133685577775544321003665589999998458766732
Q gi|254781112|r 138 --QQDIRSFK--DLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLF 213 (274)
Q Consensus 138 --~~~~~~~~--dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~ 213 (274)
...+.+++ ||+||+||.. -++.+..-.++..+++..|...=.+. ....+. .-|.+..-+
T Consensus 72 dW~~~~~~L~~~dl~GK~VAlf----------GlGDQ~~Ysd~F~dgmg~L~d~~~~~--Ga~~VG-----~wPtdGY~F 134 (176)
T TIGR01752 72 DWEEFLSDLEELDLKGKTVALF----------GLGDQEGYSDTFCDGMGILYDKIKAR--GAKVVG-----FWPTDGYEF 134 (176)
T ss_pred CHHHHHHHHHHCCCCCCEEEEE----------ECCCCCCCHHHHHHHHHHHHHHHHHC--CCEEEE-----CCCCCCEEC
T ss_conf 1677765442023588768997----------25884611066787788999998515--880775-----146995001
Q ss_pred EECCCCCCC-CCEEEEEECCCH-HH-HHHHHHHHHHHHHC
Q ss_conf 623677687-707999818998-99-99999999999979
Q gi|254781112|r 214 KIADRMKDN-SAVAFMMRKGNN-KL-TRSINEILCAIHLD 250 (274)
Q Consensus 214 ~~~~~~~~~-~~~~~~~~k~~~-~L-~~~in~~l~~l~~~ 250 (274)
..+...... ...++|+=.+|+ .| .++|.+++.+++..
T Consensus 135 ~aSkA~~~gd~FVGLAlDeDNQ~dLT~~RI~~Wv~qIk~~ 174 (176)
T TIGR01752 135 EASKAVRDGDKFVGLALDEDNQPDLTEERIEKWVEQIKPE 174 (176)
T ss_pred CCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 5664300687158872154377423189999999998764
No 181
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific; InterPro: IPR005852 Phosphoglucomutase, alpha-D-glucose phosphate-specific () links the anaerobic or aerobic glycolysis of glucose-6-phosphate and glucose-1-phosphate produced by various glycan phosphorylases by catalysing the transfer of a phosphate group between C-1 and C-6 of glucose . Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.; GO: 0004614 phosphoglucomutase activity, 0005975 carbohydrate metabolic process.
Probab=24.33 E-value=36 Score=14.53 Aligned_cols=34 Identities=35% Similarity=0.673 Sum_probs=26.3
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCC
Q ss_conf 5895899962899872487046998488988521678997629985556
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFF 87 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~ 87 (274)
++-.||+|++ |+. |-.+|+++.|+++-++++.+|
T Consensus 229 ~~Agl~lGvD----PLG-----------Ga~v~YW~~Ia~~y~L~lt~V 262 (553)
T TIGR01132 229 RKAGLRLGVD----PLG-----------GAGVDYWKEIAEKYNLDLTLV 262 (553)
T ss_pred HHCCCEECCC----CCC-----------CCCHHHHHHHHHHHCCCEEEE
T ss_conf 6589777234----677-----------787367899998757864765
No 182
>PRK02889 tolB translocation protein TolB; Provisional
Probab=23.59 E-value=47 Score=13.82 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=9.8
Q ss_pred EEEEEHHHHHHHCCCC
Q ss_conf 8852167899762998
Q gi|254781112|r 68 FDIDLIKEVAHRLNLK 83 (274)
Q Consensus 68 ~~~dl~~~i~~~lg~~ 83 (274)
..-|+.+-|...|...
T Consensus 53 ~~~~i~~II~~DL~~S 68 (430)
T PRK02889 53 LPQQVTSIVRADLARS 68 (430)
T ss_pred CHHHHHHHHHHHHHHC
T ss_conf 5067999999888728
No 183
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=23.55 E-value=48 Score=13.74 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=10.9
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCE
Q ss_conf 9589996289987248704699848
Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDGRGEL 65 (274)
Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~~g~~ 65 (274)
..+.|| ..-|.|+.. |-+|+.
T Consensus 34 ~~~~iG--~~aP~f~l~--~l~G~~ 54 (176)
T PRK03147 34 EKMQVG--KEAPNFVLT--DLEGKK 54 (176)
T ss_pred CCCCCC--CCCCCCEEE--CCCCCE
T ss_conf 523379--908971627--899898
No 184
>PRK12450 foldase protein PrsA; Reviewed
Probab=23.46 E-value=51 Score=13.60 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254781112|r 5 LRDLRKIFFSKYLFFAPFFI 24 (274)
Q Consensus 5 ~~~mk~~~~~~~l~~~~~~~ 24 (274)
|..|+|++.....+++.+.+
T Consensus 1 m~~mKK~~~~~~~~~svl~L 20 (309)
T PRK12450 1 MKQMNKLITGVVTLATVVTL 20 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 91799999999999999999
No 185
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=23.33 E-value=35 Score=14.60 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254781112|r 5 LRDLRKIFFSKYLFFAPFFI 24 (274)
Q Consensus 5 ~~~mk~~~~~~~l~~~~~~~ 24 (274)
|++|||+.+...+.+..++.
T Consensus 1 ~~~~~ki~~~~ii~~~~~~~ 20 (336)
T PRK00059 1 MKSAKKIVASLLVGVFIFSA 20 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 95079999999999999998
No 186
>KOG4596 consensus
Probab=22.39 E-value=36 Score=14.52 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHCCC--CCCCCCCCC
Q ss_conf 899999999999999798599999876788--877568987
Q gi|254781112|r 234 NKLTRSINEILCAIHLDGTYKKIFDRYFDK--NIISSVPGC 272 (274)
Q Consensus 234 ~~L~~~in~~l~~l~~~G~~~~I~~kw~g~--d~~~~~~~~ 272 (274)
+.|...++.....++.. +++++..+||.+ |+..|.|+|
T Consensus 1478 ~~l~S~~~~~~~eit~e-rleell~~~f~~~~d~as~~~~~ 1517 (1936)
T KOG4596 1478 ASLQSVYSGENAEITAE-RLEELLNRWFAQLRDVASSTILE 1517 (1936)
T ss_pred HHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 88999980752134688-89999998889876550221666
No 187
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=21.75 E-value=55 Score=13.39 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=19.1
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 789976299855566898898864310322110
Q gi|254781112|r 74 KEVAHRLNLKVEFFETAVSGLITGLDTNRYDVL 106 (274)
Q Consensus 74 ~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~ 106 (274)
+..++.-|+++++..++-.+..+.+++.++|++
T Consensus 22 ~~~A~~~G~dveI~Av~~~e~~~~i~~~~yDv~ 54 (104)
T PRK09590 22 TEFLKGKGKDIEVDAISATEGGKAIAAAAFDLY 54 (104)
T ss_pred HHHHHHCCCCEEEEEEEHHHHHHHHCCCCCCEE
T ss_conf 999997698369998488898876322688789
No 188
>pfam00496 SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle. The borders of this family are based on the PDBSum definitions of the domain edges for the periplasmic oligopeptide-binding protein from Salmonella typhimurium.
Probab=21.75 E-value=55 Score=13.39 Aligned_cols=70 Identities=10% Similarity=0.047 Sum_probs=35.4
Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHHH
Q ss_conf 21336855777755443210036655899999984587667326236776877079998189-----9899999999999
Q gi|254781112|r 171 LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEILC 245 (274)
Q Consensus 171 ~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l~ 245 (274)
+..+.+......++.+|++|.+..............+.. .+...+ .....++.++.. |+.++.+|..+|.
T Consensus 150 ~~~~~~~~~~~~~l~~G~iD~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~l~~N~~~~~~~d~~vR~Ai~~aid 224 (361)
T pfam00496 150 FRVIPDDAARLAALQSGEVDDVAGLPPSDLAQLEKDPGL----DVLEGP-GGGTYYLAFNTKKPPFDDVRVRQALAYAID 224 (361)
T ss_pred EEECCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCE----EEEECC-CCEEEEEECCCCCCCCCCHHHHHHHHHHCC
T ss_conf 998688389999987698008846998999999748973----899748-861798721468876699999999997339
No 189
>TIGR02089 TTC tartrate dehydrogenase; InterPro: IPR011829 Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate . These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in IPR004429 from INTERPRO and IPR011828 from INTERPRO, respectively.; GO: 0009027 tartrate dehydrogenase activity, 0051287 NAD binding.
Probab=21.58 E-value=41 Score=14.19 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=12.2
Q ss_pred EHHHHHHHCC-CCCCCCCCCHHHHH
Q ss_conf 1678997629-98555668988988
Q gi|254781112|r 72 LIKEVAHRLN-LKVEFFETAVSGLI 95 (274)
Q Consensus 72 l~~~i~~~lg-~~~~~~~~~~~~~~ 95 (274)
+++++++..| +.+++...||.++-
T Consensus 25 VL~A~a~~hG~~~l~~~~FpWSs~d 49 (355)
T TIGR02089 25 VLEAAAKKHGGLSLEFTEFPWSSCD 49 (355)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 9999997419848740258986338
No 190
>PRK13348 chromosome replication initiation inhibitor protein; Provisional
Probab=21.36 E-value=56 Score=13.34 Aligned_cols=160 Identities=13% Similarity=0.054 Sum_probs=80.9
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCC-----CCCCCCCCCC
Q ss_conf 67899762998555668988988643103221100003675675420023332222222221112-----2221111123
Q gi|254781112|r 73 IKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSD-----QQDIRSFKDL 147 (274)
Q Consensus 73 ~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~-----~~~~~~~~dL 147 (274)
+....++-++.+++...+.++.++.+..|.+|++......+.. -..+.|+......++...+ .....+.++|
T Consensus 109 l~~~~~~p~~~l~l~~~~~~~~~~~l~~g~~d~ai~~~~~~~~---~~~~~~l~~~~~~~vasp~~~~~~~~~~~~~~~l 185 (294)
T PRK13348 109 LASVLAGERILLELIVDDQDHTFALLERGEVVGCVSTQSKPMR---GCLAEPLGTMRYRCVAAPAFAARYFPQGLTRHSA 185 (294)
T ss_pred HHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEEEECCCCCCC---CCEEEECCCEEEEEEECHHHHHHCCCCCCCHHHH
T ss_conf 9999856797788873451368999974941244533788888---8568982251599998778998607899998898
Q ss_pred CCCCEEEE-CCCH-HHHHHHCC-----CC-CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 34320231-0101-22332013-----45-42133685577775544321003665589999998458766732623677
Q gi|254781112|r 148 TDKTVAQI-LGTD-LSRFAKEL-----KS-HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRM 219 (274)
Q Consensus 148 ~g~~V~~~-~g~~-~~~~l~~~-----~~-~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (274)
.+...... .++. ...+.... +. ....+++.+...+++.+|-. ..+.+...+...+.+- ..+.+.+..
T Consensus 186 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~G~G-i~~lP~~~v~~~l~~G----~Lv~vlp~~ 260 (294)
T PRK13348 186 LKAPAVAFNRKDTLQSSFLQRLFGLPVGAYPRHYVPSTHAHLAAIRHGLG-YGMVPELLIGPLLAAG----RLVDLAPAH 260 (294)
T ss_pred HCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHCCE-EEECCHHHHHHHHHCC----CEEECCCCC
T ss_conf 25988996599716689998646887676646898979999999997992-8966499999998489----878917999
Q ss_pred CCCCCEEEEEECC---CHHHHHHHHH
Q ss_conf 6877079998189---9899999999
Q gi|254781112|r 220 KDNSAVAFMMRKG---NNKLTRSINE 242 (274)
Q Consensus 220 ~~~~~~~~~~~k~---~~~L~~~in~ 242 (274)
+.+.++..+++ +|.....++.
T Consensus 261 --~~~v~l~~~~~~~~~p~~~af~d~ 284 (294)
T PRK13348 261 --PVDVALYWHHWEVEPPTMEALSQR 284 (294)
T ss_pred --CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf --771479800688689799999999
No 191
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.23 E-value=44 Score=14.03 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=7.8
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 59999987678887
Q gi|254781112|r 252 TYKKIFDRYFDKNI 265 (274)
Q Consensus 252 ~~~~I~~kw~g~d~ 265 (274)
+++++|.+||+..-
T Consensus 64 ~~N~vY~~~F~~~~ 77 (101)
T cd06155 64 EVNSVYGTFFDKPN 77 (101)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999999859999
No 192
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=21.21 E-value=57 Score=13.32 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q ss_conf 7755443210
Q gi|254781112|r 181 LQLLLSKRTD 190 (274)
Q Consensus 181 ~~~l~~grvD 190 (274)
++.|.+|++|
T Consensus 690 l~~la~G~vD 699 (1139)
T COG1197 690 LKGLAEGKVD 699 (1139)
T ss_pred HHHHHCCCCC
T ss_conf 9998569845
Done!