HHsearch alignment for GI: 254781112 and conserved domain: pfam03180
>pfam03180 Lipoprotein_9 NLPA lipoprotein. This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to pfam00497 which are solute binding proteins.
Probab=97.08 E-value=0.00065 Score=43.87 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=103.0
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCH--HCCC----CHHH
Q ss_conf 89996289987248704699848898852167899762998555668-988988643103221100--0036----7567
Q gi|254781112|r 43 LRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLV--NVAI----TPER 115 (274)
Q Consensus 43 l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~--~~~~----t~eR 115 (274)
T Consensus 1 lkvG~~~~--p~~--------~i----~~~v~~~~~~~Gi~veiv~F~Dy~~pN~AL~~GeIDaN~fQH~~yl~~~n~~~ 66 (236)
T pfam03180 1 LKVGATPG--PHA--------EV----LEVAKPLAKKKGLDLEIVEFTDYVQPNTALADGEIDANAFQHLPYLDQFNKEG 66 (236)
T ss_pred CEEEECCC--CHH--------HH----HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCHHHHCCHHHHHHHHHHC
T ss_conf 98964389--769--------99----99999999964987999981686455079778995524443899999999977
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCH-HHH---HHHCCCC---------------------
Q ss_conf 542002333222222222111222211111233-43202310101-223---3201345---------------------
Q gi|254781112|r 116 QKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTD-LSR---FAKELKS--------------------- 169 (274)
Q Consensus 116 ~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~-~~~---~l~~~~~--------------------- 169 (274)
T Consensus 67 g~~L~~v~~~~~~p~glYS~----k~ksl~~lp~Ga~IaIpnD~sN~~RAL~lL~~aGLI~Lk~~~~~~~t~~DI~~Npk 142 (236)
T pfam03180 67 GLDLVAVGNTHVEPIGLYSK----KYKSLSELPDGATIAVPNDPSNEGRALLLLEKAGLIKLKDGAGLLATVKDITENPK 142 (236)
T ss_pred CCCEEEEEEEEECCEEEEEC----CCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHCCC
T ss_conf 99679963046723795433----76887585799989815884429999999998898897689998789888972867
Q ss_pred --CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC-EEECCCCCCCCCEEEEEECCCH--HHHHHHHHHH
Q ss_conf --4213368557777554432100366558999999845876673-2623677687707999818998--9999999999
Q gi|254781112|r 170 --HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNL-FKIADRMKDNSAVAFMMRKGNN--KLTRSINEIL 244 (274)
Q Consensus 170 --~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~--~L~~~in~~l 244 (274)
T Consensus 143 ~l~~~ev-~a~ql~~~l--~dvD~avin~n----~a~~agl~p~~~~l~~e~~~~~y~n~ivvr~~~~d~~~ik----~l 211 (236)
T pfam03180 143 NLKIKEL-EAAQLPRAL--DDVDAAVINTN----YALQAGLDPKKDALFEEDKDSPYVNIIVVREDDKDDPAVK----KL 211 (236)
T ss_pred CCEEEEE-CHHHHHHHC--CCCCEEEECHH----HHHHCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHH----HH
T ss_conf 7669991-677755421--66578998656----7988794921213314788998379999817776999999----99
Q ss_pred HHHHHCCHHHHHHHHHCCCCC
Q ss_conf 999979859999987678887
Q gi|254781112|r 245 CAIHLDGTYKKIFDRYFDKNI 265 (274)
Q Consensus 245 ~~l~~~G~~~~I~~kw~g~d~ 265 (274)
T Consensus 212 ~e~~~s~~vk~~i~~~y~G~~ 232 (236)
T pfam03180 212 VKAYQSEEVKAFIEKKYGGAV 232 (236)
T ss_pred HHHHCCHHHHHHHHHHCCCCE
T ss_conf 999879999999998869944