HHsearch alignment for GI: 254781112 and conserved domain: pfam03180

>pfam03180 Lipoprotein_9 NLPA lipoprotein. This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to pfam00497 which are solute binding proteins.
Probab=97.08  E-value=0.00065  Score=43.87  Aligned_cols=194  Identities=15%  Similarity=0.155  Sum_probs=103.0

Q ss_pred             EEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCH--HCCC----CHHH
Q ss_conf             89996289987248704699848898852167899762998555668-988988643103221100--0036----7567
Q gi|254781112|r   43 LRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLV--NVAI----TPER  115 (274)
Q Consensus        43 l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~--~~~~----t~eR  115 (274)
T Consensus         1 lkvG~~~~--p~~--------~i----~~~v~~~~~~~Gi~veiv~F~Dy~~pN~AL~~GeIDaN~fQH~~yl~~~n~~~   66 (236)
T pfam03180         1 LKVGATPG--PHA--------EV----LEVAKPLAKKKGLDLEIVEFTDYVQPNTALADGEIDANAFQHLPYLDQFNKEG   66 (236)
T ss_pred             CEEEECCC--CHH--------HH----HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCHHHHCCHHHHHHHHHHC
T ss_conf             98964389--769--------99----99999999964987999981686455079778995524443899999999977


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCH-HHH---HHHCCCC---------------------
Q ss_conf             542002333222222222111222211111233-43202310101-223---3201345---------------------
Q gi|254781112|r  116 QKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTD-LSR---FAKELKS---------------------  169 (274)
Q Consensus       116 ~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~-~~~---~l~~~~~---------------------  169 (274)
T Consensus        67 g~~L~~v~~~~~~p~glYS~----k~ksl~~lp~Ga~IaIpnD~sN~~RAL~lL~~aGLI~Lk~~~~~~~t~~DI~~Npk  142 (236)
T pfam03180        67 GLDLVAVGNTHVEPIGLYSK----KYKSLSELPDGATIAVPNDPSNEGRALLLLEKAGLIKLKDGAGLLATVKDITENPK  142 (236)
T ss_pred             CCCEEEEEEEEECCEEEEEC----CCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHCCC
T ss_conf             99679963046723795433----76887585799989815884429999999998898897689998789888972867


Q ss_pred             --CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC-EEECCCCCCCCCEEEEEECCCH--HHHHHHHHHH
Q ss_conf             --4213368557777554432100366558999999845876673-2623677687707999818998--9999999999
Q gi|254781112|r  170 --HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNL-FKIADRMKDNSAVAFMMRKGNN--KLTRSINEIL  244 (274)
Q Consensus       170 --~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~--~L~~~in~~l  244 (274)
T Consensus       143 ~l~~~ev-~a~ql~~~l--~dvD~avin~n----~a~~agl~p~~~~l~~e~~~~~y~n~ivvr~~~~d~~~ik----~l  211 (236)
T pfam03180       143 NLKIKEL-EAAQLPRAL--DDVDAAVINTN----YALQAGLDPKKDALFEEDKDSPYVNIIVVREDDKDDPAVK----KL  211 (236)
T ss_pred             CCEEEEE-CHHHHHHHC--CCCCEEEECHH----HHHHCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHH----HH
T ss_conf             7669991-677755421--66578998656----7988794921213314788998379999817776999999----99


Q ss_pred             HHHHHCCHHHHHHHHHCCCCC
Q ss_conf             999979859999987678887
Q gi|254781112|r  245 CAIHLDGTYKKIFDRYFDKNI  265 (274)
Q Consensus       245 ~~l~~~G~~~~I~~kw~g~d~  265 (274)
T Consensus       212 ~e~~~s~~vk~~i~~~y~G~~  232 (236)
T pfam03180       212 VKAYQSEEVKAFIEKKYGGAV  232 (236)
T ss_pred             HHHHCCHHHHHHHHHHCCCCE
T ss_conf             999879999999998869944